CmoCh05G005010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G005010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr05: 2407616 .. 2410679 (+)
RNA-Seq ExpressionCmoCh05G005010
SyntenyCmoCh05G005010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACGAGGAAGACGACGACTCCATTAGAAGAGCTCAATTGCACGAGGAGTGAGTCACGCAATCAATCCCCGTCGAGGGCTCTACCAGTTCTCTTCGTGGGCTCGGGTTTCAGCTTCTGTAGTTTTATATTGGGCCTAAGCCCAATATTCGTGTTGGGCTTTATCACTAACTTTCTTGGGCTTATATTTGGGCTAGAGTTTCTGGTTTTCATATTGGGCCTGAGTCCAACTCTGAGGTTCAAGCAAGCTTTCCAGATTTCGCGGTGCTTTCTCCATTCCCGCCCCTATTCCGTTTTCGTCCTCTGATTTTGGCGGCGTTTCTTGTGCCGTGCTCCCATGGAACTAGAAGGTTCTCCTGGAAACTCTGCTGAAAATCCTTGAATTATTTACAAATTTCTGGTAATTTCCATATCCTCTCTGAATCTGCAAGTTTCGTTAGCGAGTATGTTGTTCTTTTGCTGCGGGAATTGGAAGCTAGTGAACTATGGATTGTAGATTTTCGGTATTTTTCAATGCCTCTTTGAATTCTGATTGCTGAAGTATCGAGTAGTCTTAATGTTAGACCTATGAGTATGCTGTTAAGCTGAATTTTACGGAGCATAAGGATAGGTAAAGTAGCCGCGAAATGGCGAAGTAAAGGAAATGGAGGCATTATGGTTACGTTATGTCTTATGCGTTTAATGATGCAAGTGATTGTAGTACATTTGACGATAGAACTTCAAGTTTTAGCTGTATAAAATATTTCCTGGGATTCTTTATCAATTTTTGGTTTGTTTGGCCTTTGTTTTGGATGTCTGTGATCTTACACTTCTTACTACTTAAGAAACATAGCTCCATGGTTGAAATTCTTTCATTCTTTGTTCGTGATTTTGAGGCTTTAGTGTCTGTTGATCAGTCCTACGTACTGTGTTTGTCTTGGTAGTTGGTTGCAGTATGCATGACACTGTTTCCTTTGACGCTCTGATCTTGAAAAGATCTTCAAATTTAGCGTTGATCTTAGTCTCGGTTTCAATCTTCTTAGCATTGATCTTCAACAAATTACCATATTAATGTAACCAAGAAGTTCTTTCAATCAACAAAATAGAGTTAAATTTAGAATCTAGTCCCCGTAGTTAGCTATTTTTAATGTTTTGATACCCATATTTTAATATGTTCCATTATATTCCTTTTTAAAAACAAATCATTTTATTCATTTACATTAATTAGCCAGTAAAATAGTCATTAAAAAAAAAAAAAAAAGTTAGCATGGTTCCATGTGGCGTGGACTGCATTAGTTTCTCTGTATATAGTCAGAGCTGTAAATAATTTCAAGGTACCACACCAACCTTCACATGTTCATGTCAATTTTTCTTCATATTTTACTGGATATCCACCATCGGAACCACAATGTTATTGTTATGCTTGTAGAAGTATAACCATTAAATTGAATGAACCAAAGTTGAAAAAATTTAAAGAAAAAAGAATGAAGTACTAAACGATAACTATAATTATGATTTAGTGAATTGAAAGTCTAAAGAAAGAGTCCGAATCTAAGTAAAGTTATGACAAGAGTATGAATATAGACTTTCAGTTTATTGCTATTTTGAAGTATAATTTTTTTCTCATTGCTTAAAACAGGAATTTTTCTCAAAATTTTAAGTGATTCAAAAAGCCACATTTTAAGTTATGGGATTCTACGTAGGCCTTTCCTTTTCCCCACTAATGGACTGTGGTATAAGCATTCCATGATGAACACCATAATAGTGCCGTCACGAAATAAAACTTTCAACTATAAGGGTAATTATGTAACCAATGTAAAAGCTTGAAGAAGAATAAAAATTGTTAAAGCAAGGGACTAAAACTTGAAAATTTTATAATTTAGGGGCTAATATTGTAGTTTGACCCAAATTTTGTATGCAAATCACACGTCCTAGTGGAATTATGTACCGTCTCCTTTAAATTTTCTTTGTAACAAACAGTTAGGATTGAAAAGATTACTTCAATGTGCATACTGATCGGATCTGTATTATATGTGCATACTGATCGGACAGCATGATCAAAGCCATCATAGTTTTACTATTGCTCCTTCTACTTTGTCATCAACTGGGGTTACATTTGCTTTTGGATGATTAAATTGCACTAAAGCAATTAACTGTTATGATAAGGTGTGTATTTAAACAATTATATCACTTCTGGAAACTTTTAATCATGATATAAGACATTATGAGGTTGTGTATTGTTTTTGTGGGTTGACTGAATACAATACATCTTTTTTTTCTATCCTTTGCTATGTGATAACGGTGGGAGACTGGAAAAATATTAATGTATTGGATCTACTCACATTTACACGCATTCTCTGCAGGTCTTTAAATAGACTGATTATGCAGAGATAACCAGAGTTAACTTCCTAATAAGTTGCTATTGTTTTAGTAGAATAACAGAAAAACCTAAACCCTTTACACTAAGCATGCAAAATGAAGAATTCAACTTGTATATGTAAATTGAATTTAGAGTAAGAATCGGACAAGTAGAATATTCTTGATGTTTCAAATTAACCCATCTTCCATTGCTTATATAGCAACCTTGCTCATGACTCTATACTGAAAGAAGTTGTAGTCAAGGGTATTGTTTTTTTTATTTATTCCAAAAGTTCGTCATTTGTTGGTATTAACTATATTGATTTATACGTGTATTGTAGCTGTTTCTTTTCTTAGGATAACCCACTGTCCATAGCCCATTGAGGTTTCATGTTTTTCAGATAGGCATTTCTGCCATATGACATCGAGGTGTTTTTGATGAAATTTACAGACTTGCAACTTGAAGATTTGGCGGGAAATCTTAACAAAATCTATGGTATTGCTGGTGGTATAAAGTTGATGTTGAGTATGGTTACTGAAATAACAATTACATAGTCAAGGGATGGTATGCGAGGATTTAACACCCAATTTTCTAGAGATCCAGATGCACAACTGCATGGCTTCGCATTGCTCAACATGGTAACAAGATTATAACATGGATCTTTCATTTGCTTGCTCTTGAAGTTCTCCGTTCTCACATTTTTCAATTGTGTGCTGTAAATTAA

mRNA sequence

ATGAAAACGAGGAAGACGACGACTCCATTAGAAGAGCTCAATTGCACGAGGAACTTGCAACTTGAAGATTTGGCGGGAAATCTTAACAAAATCTATGGTATTGCTGGTGGTATAAAGTTGATGTTGAGTATGAGATCCAGATGCACAACTGCATGGCTTCGCATTGCTCAACATGGTAACAAGATTATAACATGGATCTTTCATTTGCTTGCTCTTGAAGTTCTCCGTTCTCACATTTTTCAATTGTGTGCTGTAAATTAA

Coding sequence (CDS)

ATGAAAACGAGGAAGACGACGACTCCATTAGAAGAGCTCAATTGCACGAGGAACTTGCAACTTGAAGATTTGGCGGGAAATCTTAACAAAATCTATGGTATTGCTGGTGGTATAAAGTTGATGTTGAGTATGAGATCCAGATGCACAACTGCATGGCTTCGCATTGCTCAACATGGTAACAAGATTATAACATGGATCTTTCATTTGCTTGCTCTTGAAGTTCTCCGTTCTCACATTTTTCAATTGTGTGCTGTAAATTAA

Protein sequence

MKTRKTTTPLEELNCTRNLQLEDLAGNLNKIYGIAGGIKLMLSMRSRCTTAWLRIAQHGNKIITWIFHLLALEVLRSHIFQLCAVN
Homology
[Close]
BLAST of CmoCh05G005010 vs. NCBI nr
Match: KAG7029608.1 (hypothetical protein SDJN02_07948, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MKTRKTTTPLEELNCTRNLQLEDLAGNLNKIYGIAGGIKLMLSMRSRCTTAWLRIAQHG 60
          MKTRKTTTPLEELNCTRNLQLEDLAGNLNKIYGIAGGIKLMLSMRSRCTTAWLRIAQHG
Sbjct: 1  MKTRKTTTPLEELNCTRNLQLEDLAGNLNKIYGIAGGIKLMLSMRSRCTTAWLRIAQHG 59

The following BLAST results are available for this feature:
BLAST of CmoCh05G005010 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G005010 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh05G005010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7029608.11.8e-24100.00hypothetical protein SDJN02_07948, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh05G005010 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G005010.1CmoCh05G005010.1mRNA