CmoCh05G004780 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G004780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	peptidyl-prolyl cis-trans isomerase E
Location	Cmo_Chr05: 2228158 .. 2230150 (+)
RNA-Seq Expression	CmoCh05G004780
Synteny	CmoCh05G004780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTAGTAAGTTCCCCTTTTCCTTAAACCCTAATTATTTTCATCTATTGTTTCTCTGCATTTGTGAAATTCCGCTTGTGTTACATCTCATTGTTGATTGATAACTTCTTGGCTGTGCTCCATTACCTGTTTTGCTCTAATTTCATGCTATGATAGGAGTCCTTGAAAATAGAAATAGAATTTATGCAATCTATTTGGTTGCATTGCATACAATAGTGGTTCGTTGGTTATATTCTAAATCTTCAATTTCATTCTTACAATTTCAAATGTTTTGTTAGTGCAATAAAAAATTTCAGTCTAGCCGATTTCTAATTTGATTTCAAATCAAATATATGTATCTGAAACTGATTTATATGCAAAATTCTGTGAAGGAACCAAAGCTAACAATTTAAAAAGTAAACTAAAATTTGGTTCATGTGGAAGTTCTGGACCAAAATTAGATTTAAACAGCTTATCATTTTCTGGTGCCGAAGTTTAATCCTTAGGACAAGTTTTGGAAATTGTTTTAAGATTTGGACTCGGTCATTTTAGGATTTATTTAGATTATGTTTGTGTATCTAAATCTCCTGCCCTGGTTGCTAATTACAAGTATTGCAATCTATGGCATTAGCATGCTGATAGTTTCCTCCATTCCTGCCAATATGAACCTAGCTTAGTAGTTAAAGCATCTATGAAGTTTGAGGTTCAAATTCTCGCAGCGTGTCGTATAAAACAAAAATATGTTCCATCTCCTTGACTGTTCTTTGATTTCTATTTCCCCTCAATGTTCTTGTGGGCTCCTGTATCATCACTACTTGTTCTGCATCTTTTGTGAGCTTAGAATTGAGTGATTAAAGCTTTACTGCACGTCTACTACCGAGTGGCTGGCACTGTCTGATTGCCTCAACTCCTTCGATTTTAGAACGTATCTTGGCACTTGTGTGTTATTGACTGGTGTAGAGGCCTACTAACTTGAAGTTAGCAGCCTCGTTCAGTTCCCATGGATAGTTGTATACTTTGTCTTTCATCATTCCCTTTCCATTTCACTGGACGTTTTTGTATGATTGAAATGTGTTGCATTGCTATAGTGATCTTGCAAATGGGTCTGAATGAGTGATTTTCCCCCTCTTCTTGTCCTAATTGTTACTAAACAAACGCCTTCCTTTAAATTATAGTTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCGCTGAGCTTGCTATTGCTATTCACAATGCTGATATGCATGTTAAGCTTACGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCTTAGTTTGAAAAGCTGAACAACGCTTACCTTTGATGAAAACTTGTAATTTTATGGAAAGAAGATCTAGAAATCAGGAGTTTTTAATGCGACAGCATTGTTGTTTTAGTTCCC

mRNA sequence

AAGCAGAAGAATCCTGAAGAAAAGAGCATAAACGCCTCTAATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAAAAGAGACGAAGTTTAGTGAGATTTGAACTTGCTTCAATGCAAGTGAAAGAGAGAGATAGAGAGGCAGAACATGGAAAACCTGCCGTTCGCTGAGCTTGCTATTGCTATTCACAATGCTGATATGCATGTTAAGCTTACGCATTGTTTTGTTTCTGTAGTTAATTCTATTCACAAAGCTTAGTTTGAAAAGCTGAACAACGCTTACCTTTGATGAAAACTTGTAATTTTATGGAAAGAAGATCTAGAAATCAGGAGTTTTTAATGCGACAGCATTGTTGTTTTAGTTCCC

Coding sequence (CDS)

ATGGCGCAGGCTGTTCAGAAAAATACTCTGTACGTTGGTGGTTTGGCGGAGGAGGTGAACGAGTCTATTCTACACGCAGCCTTCATTCCCTTCGGCGACATCAAAGATGTAAAAACTCCATTGGATCAAGCCACTCAGAAGCACCGTTCCTTCGGCTTCGTCACTTTCTTGGAGAAGGAAGACGCATCCGCCGCCATGGATAATATGGACGGTGCTGAGCTCTACGGCCGTGTCCTCACTGTCAACTATGCCCTCCCCGAGCGTATCAAGGGTGGTGAACAAGGATGGGCTGCCCAACCTATTTGGGCCGATGCGGATACGTGGTTTGAAAGGCAGCAACAAGAGGAGGAAATGCAGCGGATTCAGGCGGAGAATCGAGCAACTATGCAGGCTGCTGAGGAGCTGCACAGGAAGAAAGTAGCTCAAGAGCGGGAAGGGGAAAAAGAAGACGAGGTAGACACGAAGGACGATCCCATGGCTAAGGCTGAAGCCGAGGCATTAAGACAGAACAGTTAA

Protein sequence

MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS

Homology

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BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot
Match: A4FV72 (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot
Match: Q9QZH3 (Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28
Identity = 60/108 (55.56%), Postives = 79/108 (73.15%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W ++
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104

[Close]

BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot
Match: Q5R723 (Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.0e-27
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW--------FERQQQE 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W         E  ++E
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 EEMQRIQAENRATMQAAEE 135
           E  +  +AE +    AA++
Sbjct: 122 EGSEPPKAETQEGEPAAKK 135

[Close]

BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot
Match: Q9UNP9 (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.0e-26
Identity = 68/139 (48.92%), Postives = 91/139 (65.47%), Query Frame = 0


Query: 4   AVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAS 63
           A  K  LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD  T+KHR F FV F   EDA+
Sbjct: 2   ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61

Query: 64  AAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTW---FERQQQEEEMQR 123
           AA+DNM+ +EL+GR + VN A P RIK G    +++P+W+D D W   F  +  EE  + 
Sbjct: 62  AAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKKFSGKTLEENKEE 121

Query: 124 IQAE-NRATMQAAEELHRK 139
             +E  +A  Q  E + +K
Sbjct: 122 EGSEPPKAETQEGEPIAKK 135

[Close]

BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot
Match: Q9V3G3 (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp33 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.4e-23
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   KNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAM 66
           K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D  +Q+HR F F+ + + EDA+AA+
Sbjct: 5   KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64

Query: 67  DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ-----QQEEEMQRI 126
           DNM+ +EL GR + VN A P R+K      + +PIWAD D W ++      Q E E +  
Sbjct: 65  DNMNDSELCGRTIRVNLAKPVRVKED----SFKPIWAD-DDWLQKHAGATLQPEGEPEAE 124

Query: 127 QAENRATMQAAEELHRKKVAQ 143
           + E  +T  A  E   K+  Q
Sbjct: 125 KVETPSTGPAVIEKAEKRNPQ 140

[Close]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL
Match: A0A6J1K4K2 (peptidyl-prolyl cis-trans isomerase E OS=Cucurbita maxima OX=3661 GN=LOC111492233 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL
Match: A0A6J1HD37 (peptidyl-prolyl cis-trans isomerase E OS=Cucurbita moschata OX=3662 GN=LOC111462518 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.4e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL
Match: A0A6J1BSQ7 (peptidyl-prolyl cis-trans isomerase E OS=Momordica charantia OX=3673 GN=LOC111005196 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.1e-85
Identity = 165/169 (97.63%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AENRA MQAAEELHRKK+AQEREGEKEDE+DTKDDPMAKAEAE LRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

[Close]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL
Match: A0A1S3BCQ8 (peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.3e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL
Match: A0A0A0KGY3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.7e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: XP_022961878.1 (peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita maxima] >XP_023545633.1 peptidyl-prolyl cis-trans isomerase E [Cucurbita pepo subsp. pepo] >KAG6598643.1 Peptidyl-prolyl cis-trans isomerase E, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029580.1 Peptidyl-prolyl cis-trans isomerase E [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 332.0 bits (850), Expect = 3.0e-87
Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS
Sbjct: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: XP_038884408.1 (peptidyl-prolyl cis-trans isomerase E [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 4.8e-85
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           IQAENRATM+AAEELHRKK+AQEREGEKE+EVDTKDDPMAKAEAE LRQ+S
Sbjct: 121 IQAENRATMEAAEELHRKKLAQEREGEKEEEVDTKDDPMAKAEAEVLRQSS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: XP_022132314.1 (peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 peptidyl-prolyl cis-trans isomerase E [Momordica charantia])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 165/169 (97.63%), Postives = 167/169 (98.82%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA
Sbjct: 4   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ
Sbjct: 64  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 123

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           AENRA MQAAEELHRKK+AQEREGEKEDE+DTKDDPMAKAEAE LRQNS
Sbjct: 124 AENRAAMQAAEELHRKKLAQEREGEKEDEIDTKDDPMAKAEAEVLRQNS 172

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: XP_008445441.1 (PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo])

HSP 1 Score: 320.5 bits (820), Expect = 9.0e-84
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTKDDPMAKAEAE LRQ S
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKDDPMAKAEAEVLRQKS 171

[Close]

BLAST of CmoCh05G004780 vs. NCBI nr
Match: XP_004144165.1 (peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical protein Csa_018234 [Cucumis sativus])

HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83
Identity = 163/171 (95.32%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60
           MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE
Sbjct: 1   MAQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKE 60

Query: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120
           DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR
Sbjct: 61  DASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQR 120

Query: 121 IQAENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEALRQNS 172
           +QAENRA M+AAEELHRKK+AQEREGEK++EVDTK DPMAKAEAE LRQNS
Sbjct: 121 LQAENRAAMEAAEELHRKKLAQEREGEKDEEVDTKVDPMAKAEAEVLRQNS 171

[Close]

BLAST of CmoCh05G004780 vs. TAIR 10
Match: AT1G13690.1 (ATPase E1 )

HSP 1 Score: 282.7 bits (722), Expect = 1.9e-76
Identity = 138/165 (83.64%), Postives = 158/165 (95.76%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           QA+QKNTLYVGGLA+EVNESILHAAFIPFGDIKDVKTPLDQA QKHRSFGFVTFLE+EDA
Sbjct: 8   QAMQKNTLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDA 67

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQRIQ 122
           SAAMDNMDGAELYGRVLTVNYALPE+IKGGEQGWAA P+WADADTWFERQQQE+E+ ++Q
Sbjct: 68  SAAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAAHPLWADADTWFERQQQEKEILKMQ 127

Query: 123 AENRATMQAAEELHRKKVAQEREGEKEDEVDTKDDPMAKAEAEAL 168
           AEN+A M+ AEELHRKK+A++R+GE E++ DTK+DPMA+AEA+AL
Sbjct: 128 AENKAAMETAEELHRKKLAEDRQGEMEEDTDTKNDPMARAEADAL 172

[Close]

BLAST of CmoCh05G004780 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-15
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 3   QAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 62
           + +  + L++GG+A  ++E  L  AF  +G++ D +  LD+ T + R FGFVTF   E A
Sbjct: 35  RCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAA 94

Query: 63  SAAMDNMDGAELYGRVLTVNYALPERIKGGEQG 96
           S+A+  +DG +L+GRV+ VNYA  +R  GG  G
Sbjct: 95  SSAIQALDGRDLHGRVVKVNYA-NDRTSGGGFG 126

[Close]

BLAST of CmoCh05G004780 vs. TAIR 10
Match: AT3G08000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-14
Identity = 38/91 (41.76%), Postives = 58/91 (63.74%), Query Frame = 0


Query: 2   AQAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKED 61
           + A   + L++GGL+  V+E  L  AF  FG++ +V+   D+ + + R FGFV F E+ D
Sbjct: 35  SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94

Query: 62  ASAAMDNMDGAELYGRVLTVNYALPERIKGG 93
           A +A D MDG  L GR L +++AL ER++GG
Sbjct: 95  ALSAKDAMDGKGLLGRPLRISFAL-ERVRGG 124

[Close]

BLAST of CmoCh05G004780 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-12
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 10  LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNM 69
           L++GGL+   +++ L  AF  FGD+ D K  +D+ T + R FGFV F ++  A+AA+  M
Sbjct: 37  LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96

Query: 70  DGAELYGRVLTVNYALPERIKGGEQG 96
           DG EL GR + VN A  +R  GG  G
Sbjct: 97  DGKELNGRHIRVNPA-NDRPSGGYGG 121

[Close]

BLAST of CmoCh05G004780 vs. TAIR 10
Match: AT4G39260.3 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 68.6 bits (166), Expect = 5.7e-12
Identity = 37/86 (43.02%), Postives = 50/86 (58.14%), Query Frame = 0


Query: 11 YVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASAAMDNMD 70
          +VGGLA   N+  L   F  FGD+ D K   D+ + + R FGFVTF +++    A++ M+
Sbjct: 9  FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query: 71 GAELYGRVLTVNYALPERIKGGEQGW 97
          G EL GRV+TVN A      GG  GW
Sbjct: 69 GKELDGRVITVNEAQSRGSGGG--GW 92

The following BLAST results are available for this feature:

BLAST of CmoCh05G004780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV72	5.6e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus OX=9913 GN=PPIE PE=2 SV=1	[more]
Q9QZH3	5.6e-28	55.56	Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus OX=10090 GN=Ppie PE=1 SV=2	[more]
Q5R723	8.0e-27	48.20	Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii OX=9601 GN=PPIE PE=2 SV=1	[more]
Q9UNP9	3.0e-26	48.92	Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens OX=9606 GN=PPIE PE=1 SV=1	[more]
Q9V3G3	5.4e-23	43.97	Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster OX=7227 GN=cyp3...	[more]

BLAST of CmoCh05G004780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K4K2	1.4e-87	100.00	peptidyl-prolyl cis-trans isomerase E OS=Cucurbita maxima OX=3661 GN=LOC11149223...	[more]
A0A6J1HD37	1.4e-87	100.00	peptidyl-prolyl cis-trans isomerase E OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]
A0A6J1BSQ7	5.1e-85	97.63	peptidyl-prolyl cis-trans isomerase E OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3BCQ8	4.3e-84	95.32	peptidyl-prolyl cis-trans isomerase E OS=Cucumis melo OX=3656 GN=LOC103488462 PE...	[more]
A0A0A0KGY3	9.7e-84	95.32	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G366550 PE=4 SV...	[more]

BLAST of CmoCh05G004780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961878.1	3.0e-87	100.00	peptidyl-prolyl cis-trans isomerase E [Cucurbita moschata] >XP_022997282.1 pepti...	[more]
XP_038884408.1	4.8e-85	97.08	peptidyl-prolyl cis-trans isomerase E [Benincasa hispida]	[more]
XP_022132314.1	1.1e-84	97.63	peptidyl-prolyl cis-trans isomerase E [Momordica charantia] >XP_022132315.1 pept...	[more]
XP_008445441.1	9.0e-84	95.32	PREDICTED: peptidyl-prolyl cis-trans isomerase E [Cucumis melo]	[more]
XP_004144165.1	2.0e-83	95.32	peptidyl-prolyl cis-trans isomerase E [Cucumis sativus] >KGN47657.1 hypothetical...	[more]

BLAST of CmoCh05G004780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13690.1	1.9e-76	83.64	ATPase E1	[more]
AT5G61030.1	1.9e-15	40.86	glycine-rich RNA-binding protein 3	[more]
AT3G08000.1	2.1e-14	41.76	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.4	4.4e-12	43.02	glycine-rich RNA-binding protein 2	[more]
AT4G39260.3	5.7e-12	43.02	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..171
None	No IPR available	PANTHER	PTHR15241:SF297	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE E	coord: 3..170
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 3..170
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 9..82 e-value: 3.2E-23 score: 93.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..79 e-value: 1.1E-18 score: 66.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 8..86 score: 18.188618
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..148 e-value: 4.2E-26 score: 93.7
IPR034168	Peptidyl-prolyl cis-trans isomerase E, RNA recognition motif	CDD	cd12347	RRM_PPIE	coord: 10..82 e-value: 1.62814E-44 score: 139.665
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004780.1	CmoCh05G004780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding