CmoCh05G003730 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G003730
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	40S ribosomal protein S11
Location	Cmo_Chr05: 1681016 .. 1682493 (-)
RNA-Seq Expression	CmoCh05G003730
Synteny	CmoCh05G003730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTAGGGTTTTTCCATCGCGCCAGACTCTGCGGCTTAGGCGTCTATCGGATCTTCGAAACCCTAATCATGGCGGAACAGGTATGGATTTTTTCCGTCTCCCGGCGTTTCTTTCCGTTCAATCAATGTCTGATTGGCACCTGCATTTATGAAATTATGTTCTGTTTGTAATGCAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTTCTTAGGTAAGAAATCTACTGGAAAAGCAAGTTCAAACATTGTACTTTATGCAGGCAAGGCCGTTTTCTTTTTGCCGTCGGATAAATCATTCTATCTACTTCGAGACTTTCGTTTGCAGCTCGAAGAAATCGGGAAAAGGAAAGAGACCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGTATTGGTTTGGGATTCAAAACTCCGAGAGAGGCAATTGAAGGTCTTACACAATAACTAGATTTTCATTTACTAAATTCCCGTACATTGCCTTCCTGCTTCTTTTTAGATCCAAATATTGTAGTCTCCTTCACTGTAATCTTGAGTAAATGTTATCTGCGCAATCTCGTAATTATAGATCCTGCATTTATATTATTCAGCGAGTCATTTGAAACAATGTGGTTCTTCCCTTTGCATTATCTGATCTGGCCATTGGGGAAGTTTGATTTGCTTTCACCCTATGACTATACTAATCAACATATTCATTGTTAGACGTATGATTCTCAGCGTCTTCTCATCTTAGTTGTACTAAAGATTTAAGAGTAATTCTGCTGCAGGAACATACATCGATAAGAAGTGCCCATTCACTGGCACTGTTTCTATAAGGGGACGTATACTTGCTGGGACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTACACTACGTGAAGAAATATCAAAGGTGAGAACTAAATACCCAAAATTTCATTAGTTATCTTTAATCCTTTCTATGAATGAGAATGGTGACACGGGTTGTTCATTTTTAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTAAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGTTCATACATAACTTTCTACGCCTCTGCTGTCTACTGTGACTTCGTTTTTAGTCATTTTCTTAATGGATGGGTATCTTTGCAGGCCGTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTCATTCCTGCTGGATCATCCACAGCTGGTAAGAAGGCCTTCACAGGAATTTAAGCCCAGAATTTTCAGGTCCCGTATTTGTTTATGTTAAAGAGATGATATGTTAGCATGAGTTTTTTTCTTTTTTCAGCTAGATGTTCTTTTCACTTCATTTGTTGACCGAATATCTCATTATTGTGATACTACTACTGCAATTTTGATTCCCTAAGTTTTTCTCATTACCATCGTGTTTAACTTCTTAATTTAATAGCATAACCTTCAATGCCTTCTTTTA

mRNA sequence

CTCTAGGGTTTTTCCATCGCGCCAGACTCTGCGGCTTAGGCGTCTATCGGATCTTCGAAACCCTAATCATGGCGGAACAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTTCTTAGCTCGAAGAAATCGGGAAAAGGAAAGAGACCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGTATTGGTTTGGGATTCAAAACTCCGAGAGAGGCAATTGAAGGAACATACATCGATAAGAAGTGCCCATTCACTGGCACTGTTTCTATAAGGGGACGTATACTTGCTGGGACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTACACTACGTGAAGAAATATCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTAAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGCCGTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTCATTCCTGCTGGATCATCCACAGCTGGTAAGAAGGCCTTCACAGGAATTTAAGCCCAGAATTTTCAGGTCCCGTATTTGTTTATGTTAAAGAGATGATATGTTAGCATGAGTTTTTTTCTTTTTTCAGCTAGATGTTCTTTTCACTTCATTTGTTGACCGAATATCTCATTATTGTGATACTACTACTGCAATTTTGATTCCCTAAGTTTTTCTCATTACCATCGTGTTTAACTTCTTAATTTAATAGCATAACCTTCAATGCCTTCTTTTA

Coding sequence (CDS)

ATGGCGGAACAGACGGAGAAGGCTTTTCTGAAGCAGCCCAAGGTGTTTCTTAGCTCGAAGAAATCGGGAAAAGGAAAGAGACCAGGAAAAGGAGGAAATCGGTTCTGGAAGAGTATTGGTTTGGGATTCAAAACTCCGAGAGAGGCAATTGAAGGAACATACATCGATAAGAAGTGCCCATTCACTGGCACTGTTTCTATAAGGGGACGTATACTTGCTGGGACCTGCCACAGTGCCAAGATGGTGAGAACCATCATTGTTAGACGTAATTATCTACACTACGTGAAGAAATATCAAAGGTACGAAAAGAGACACTCTAACATTCCAGCACACATAGCTCCTTGCTTTAGGGTAAAAGAGGGAGACCATGTCATCATTGGCCAGTGCAGGCCGTTGTCAAAGACCGTGAGGTTTAATGTATTGAAAGTCATTCCTGCTGGATCATCCACAGCTGGTAAGAAGGCCTTCACAGGAATTTAA

Protein sequence

MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI

Homology

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BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot
Match: P25460 (40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.3e-83
Identity = 149/157 (94.90%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGK+PGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAHI+PCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFT 158
           GDHVIIGQCRPLSKTVRFNV+KVIPAGS+ AGKKAFT
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157

[Close]

BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot
Match: Q9M5M1 (40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 8.1e-82
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFL+SKK+GKGKRPGKGGNRFWKSIGLGFKTPREAI+GTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS   KKAFT I
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot
Match: P17093 (40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2)

HSP 1 Score: 303.9 bits (777), Expect = 1.1e-81
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLS+KK+GKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTG VSIRGRILAGTCHSAKM RTIIVRRNYLH++KKYQRYEKRHSNIPAHI+P FRVKE
Sbjct: 61  FTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSS+  KKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot
Match: P42733 (40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2)

HSP 1 Score: 303.5 bits (776), Expect = 1.4e-81
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot
Match: P16181 (40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.8e-81
Identity = 146/160 (91.25%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL
Match: A0A6J1HEQ3 (40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL
Match: A0A6J1KTV2 (40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL
Match: A0A6J1BVS5 (40S ribosomal protein S11 OS=Momordica charantia OX=3673 GN=LOC111005160 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL
Match: A0A6J1K5C0 (40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 6.2e-85
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 26  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYIDKKCP 85

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 86  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 145

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG+
Sbjct: 146 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGV 184

[Close]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL
Match: A0A1S3BCY7 (40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 9.0e-84
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]

BLAST of CmoCh05G003730 vs. NCBI nr
Match: XP_022132263.1 (40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_022961674.1 40S ribosomal protein S11 [Cucurbita moschata] >XP_023002533.1 40S ribosomal protein S11 [Cucurbita maxima] >XP_023537513.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >XP_023545624.1 40S ribosomal protein S11 [Cucurbita pepo subsp. pepo] >KAG6598560.1 40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020399.1 40S ribosomal protein S11-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 7.5e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 159

[Close]

BLAST of CmoCh05G003730 vs. NCBI nr
Match: XP_022996631.1 (40S ribosomal protein S11-like [Cucurbita maxima])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 157/159 (98.74%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKS+GLGFKTPREAIEGTYIDKKCP
Sbjct: 26  MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKTPREAIEGTYIDKKCP 85

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 86  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 145

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG+
Sbjct: 146 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGV 184

[Close]

BLAST of CmoCh05G003730 vs. NCBI nr
Match: KAG6585484.1 (40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322.4 bits (825), Expect = 2.2e-84
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTG 158

[Close]

BLAST of CmoCh05G003730 vs. NCBI nr
Match: XP_038884265.1 (40S ribosomal protein S11 [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 4.9e-84
Identity = 157/159 (98.74%), Postives = 158/159 (99.37%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAFTGI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFTGI 159

[Close]

BLAST of CmoCh05G003730 vs. NCBI nr
Match: XP_008445242.1 (PREDICTED: 40S ribosomal protein S11 [Cucumis melo])

HSP 1 Score: 319.3 bits (817), Expect = 1.9e-83
Identity = 156/159 (98.11%), Postives = 157/159 (98.74%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPR+AIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPRDAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSST GKKAF GI
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTGGKKAFAGI 159

[Close]

BLAST of CmoCh05G003730 vs. TAIR 10
Match: AT5G23740.1 (ribosomal protein S11-beta )

HSP 1 Score: 303.5 bits (776), Expect = 9.8e-83
Identity = 146/159 (91.82%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSK SGKGKRPGKGGNRFWK+IGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRRNYLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+S  GKKAFTG+
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159

[Close]

BLAST of CmoCh05G003730 vs. TAIR 10
Match: AT3G48930.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 303.1 bits (775), Expect = 1.3e-82
Identity = 146/160 (91.25%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRILAGTCHSAKM RTIIVRR+YLH+VKKYQRYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTA-GKKAFTGI 160
           GDH+IIGQCRPLSKTVRFNVLKVIPAGSS++ GKKAFTG+
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160

[Close]

BLAST of CmoCh05G003730 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 301.6 bits (771), Expect = 3.7e-82
Identity = 145/159 (91.19%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWK+IGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRILAGTCHSAKMVRTIIVRRNYLHYVKKYQRYEKRHSNIPAHIAPCFRVKE 120
           FTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLH+VKKY+RYEKRHSNIPAH++PCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSSTAGKKAFTGI 160
           GD V IGQCRPLSKTVRFNVLKVIPAGSS+ GKKAFTG+
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159

The following BLAST results are available for this feature:

BLAST of CmoCh05G003730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P25460	4.3e-83	94.90	40S ribosomal protein S11 OS=Zea mays OX=4577 GN=RPS11 PE=2 SV=1	[more]
Q9M5M1	8.1e-82	92.45	40S ribosomal protein S11 OS=Euphorbia esula OX=3993 GN=RPS11 PE=2 SV=1	[more]
P17093	1.1e-81	92.45	40S ribosomal protein S11 OS=Glycine max OX=3847 GN=RPS11 PE=2 SV=2	[more]
P42733	1.4e-81	91.82	40S ribosomal protein S11-3 OS=Arabidopsis thaliana OX=3702 GN=RPS11C PE=2 SV=2	[more]
P16181	1.8e-81	91.25	40S ribosomal protein S11-1 OS=Arabidopsis thaliana OX=3702 GN=RPS11A PE=2 SV=1	[more]

BLAST of CmoCh05G003730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEQ3	3.7e-85	100.00	40S ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=LOC111462372 PE=3 SV=...	[more]
A0A6J1KTV2	3.7e-85	100.00	40S ribosomal protein S11 OS=Cucurbita maxima OX=3661 GN=LOC111496347 PE=3 SV=1	[more]
A0A6J1BVS5	3.7e-85	100.00	40S ribosomal protein S11 OS=Momordica charantia OX=3673 GN=LOC111005160 PE=3 SV...	[more]
A0A6J1K5C0	6.2e-85	98.74	40S ribosomal protein S11-like OS=Cucurbita maxima OX=3661 GN=LOC111491814 PE=3 ...	[more]
A0A1S3BCY7	9.0e-84	98.11	40S ribosomal protein S11 OS=Cucumis melo OX=3656 GN=LOC103488328 PE=3 SV=1	[more]

BLAST of CmoCh05G003730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132263.1	7.5e-85	100.00	40S ribosomal protein S11 [Momordica charantia] >XP_022951457.1 40S ribosomal pr...	[more]
XP_022996631.1	1.3e-84	98.74	40S ribosomal protein S11-like [Cucurbita maxima]	[more]
KAG6585484.1	2.2e-84	100.00	40S ribosomal protein S11-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038884265.1	4.9e-84	98.74	40S ribosomal protein S11 [Benincasa hispida]	[more]
XP_008445242.1	1.9e-83	98.11	PREDICTED: 40S ribosomal protein S11 [Cucumis melo]	[more]

BLAST of CmoCh05G003730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G23740.1	9.8e-83	91.82	ribosomal protein S11-beta	[more]
AT3G48930.1	1.3e-82	91.25	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G30800.1	3.7e-82	91.19	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 131..138 score: 73.25 coord: 121..131 score: 60.91 coord: 88..111 score: 37.33
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 74..142 e-value: 1.3E-25 score: 89.3
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..159
None	No IPR available	GENE3D	2.40.50.1000		coord: 1..158 e-value: 4.5E-83 score: 278.9
None	No IPR available	PANTHER	PTHR10744:SF24	40S RIBOSOMAL PROTEIN S11-1-RELATED	coord: 1..159
IPR028333	Ribosomal protein S17, archaeal/eukaryotic	TIGRFAM	TIGR03630	TIGR03630	coord: 54..143 e-value: 6.1E-34 score: 114.1
IPR032440	40S ribosomal protein S11, N-terminal	PFAM	PF16205	Ribosomal_S17_N	coord: 4..72 e-value: 9.4E-32 score: 109.2
IPR019979	Ribosomal protein S17, conserved site	PROSITE	PS00056	RIBOSOMAL_S17	coord: 121..133
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 68..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003730.1	CmoCh05G003730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome