CmoCh05G003690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G003690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Interleukin-2 receptor subunit beta like
Location	Cmo_Chr05: 1671726 .. 1672127 (-)
RNA-Seq Expression	CmoCh05G003690
Synteny	CmoCh05G003690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

mRNA sequence

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Coding sequence (CDS)

ATGTTGCCTCATTTTCATCACTCTCCTGCTTTCGCTCGCAAGCTCAAGTCCTCCTTCTGCTGTTTCCATGGCTTCCAACAGGACGACTTCCTCGACTCCCCCTCCAAGTCGCCGACGAGATCCCCTTGTTCCTGGTTCAAATCTACCGTCGGCGAATTCAGGGGAATACTTGCCCGGTGCCGGTATCTCCTCGCTCGCATCGCTCGCCGGAGGAAAAGGTACCTCGCCTCCGTCGACTTTTCCTACGATTCCTCCAGTTATGCCCTCAATTTTGAGGACGATTGCCGTGAAGACGATGAGTTCCCGTTCAGAAATTTTACTGCTAGATTCCCCCCGCCGATCAAGGAGCGTGTTCCGGCGGCGAAATTCGCCGGTTCTGAAGATGGAATCTCGGTTGAATGA

Protein sequence

MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAAKFAGSEDGISVE

Homology

[Close]

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL
Match: A0A6J1HE78 (uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC111462741 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 6.6e-72
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
           RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSEDGISVE 134
           AKFAGSEDGISVE
Sbjct: 121 AKFAGSEDGISVE 133

[Close]

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL
Match: A0A6J1K7R1 (uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.1e-70
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPT+SPCSWFKSTVGEFRGILARC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
           RYLLARIARRRKRYLASVDF+YDSSSYALNF+DDCREDDEFPFR+FTARFPPPIKER PA
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 AKFAGSEDGISVE 134
           AKFAGSEDGISVE
Sbjct: 121 AKFAGSEDGISVE 133

[Close]

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL
Match: A0A1S3BDX7 (uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.5e-34
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 133
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 110

[Close]

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL
Match: A0A6J1BQU1 (uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004768 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.0e-33
Identity = 83/132 (62.88%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RC
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60

Query: 61  RYLLARIAR-RRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVP 120
           RYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DDEFP RNF AR P     R+P
Sbjct: 61  RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 118

Query: 121 AAKFAGSEDGIS 132
           AAKFAGS+ G+S
Sbjct: 121 AAKFAGSQAGVS 118

[Close]

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL
Match: A0A6J1FP70 (uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC111446022 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 61/125 (48.80%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           M+ + +H  +F RKLKSS  CF      DFL++   S  R+P S  KS   EF  +   C
Sbjct: 1   MMLNDYHPFSFTRKLKSSILCFRR-DHGDFLENEGDSSPRTPRSPLKSMAAEFPELRGMC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDD-CREDDEFPFRNFTARFP--PPIKER 120
           R L+ARI R R+RY  S DF YD SSYALNFED+  R+DDEFP R+F +R P  PP   R
Sbjct: 61  RNLVARIGRSRRRYHHSADFRYDPSSYALNFEDEQVRDDDEFPIRDFASRLPASPPTSPR 120

Query: 121 VPAAK 123
           +  AK
Sbjct: 121 LSPAK 124

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: XP_022962228.1 (uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothetical protein SDJN03_08335, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029495.1 hypothetical protein SDJN02_07834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
           RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSEDGISVE 134
           AKFAGSEDGISVE
Sbjct: 121 AKFAGSEDGISVE 133

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: XP_023546798.1 (uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 6.8e-71
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPT SPCSWFKSTVGEFRGILARC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTTSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
           RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA
Sbjct: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120

Query: 121 AKFAGSEDGISVE 134
           AKFAGSEDGISVE
Sbjct: 121 AKFAGSEDGISVE 133

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: XP_022997531.1 (uncharacterized protein LOC111492424 [Cucurbita maxima])

HSP 1 Score: 272.7 bits (696), Expect = 1.7e-69
Identity = 128/133 (96.24%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPT+SPCSWFKSTVGEFRGILARC
Sbjct: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTKSPCSWFKSTVGEFRGILARC 60

Query: 61  RYLLARIARRRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPA 120
           RYLLARIARRRKRYLASVDF+YDSSSYALNF+DDCREDDEFPFR+FTARFPPPIKER PA
Sbjct: 61  RYLLARIARRRKRYLASVDFTYDSSSYALNFDDDCREDDEFPFRDFTARFPPPIKERAPA 120

Query: 121 AKFAGSEDGISVE 134
           AKFAGSEDGISVE
Sbjct: 121 AKFAGSEDGISVE 133

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: XP_008445585.1 (PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 1.1e-33
Identity = 75/116 (64.66%), Postives = 86/116 (74.14%), Query Frame = 0


Query: 18  SFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARIARRRKRYLAS 77
           SFCCFH          PS +P  SPCSW KST  E   +L RCRY LAR+ARRR  YLAS
Sbjct: 5   SFCCFH----------PSNTPKTSPCSWLKSTALELSHLLRRCRYFLARVARRRTNYLAS 64

Query: 78  VDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVPAA-KFAGSEDGISV 133
            DFSYDSSSYALNF+DDCR+D +FPFR+FTARFPPP+K+R+PAA KFAGS   I +
Sbjct: 65  ADFSYDSSSYALNFDDDCRDDHQFPFRDFTARFPPPLKDRLPAATKFAGSHHEIPI 110

[Close]

BLAST of CmoCh05G003690 vs. NCBI nr
Match: XP_022131639.1 (uncharacterized protein LOC111004768 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-32
Identity = 83/132 (62.88%), Postives = 92/132 (69.70%), Query Frame = 0


Query: 1   MLPHFHHSPAFARKLKSSFCCFHGFQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARC 60
           ML  FHHS +FA KLKSS  CF         D PS   T+SPCSWFKST  EF  +L RC
Sbjct: 1   MLADFHHSSSFAHKLKSSIGCFRA------SDQPS---TKSPCSWFKSTAAEFPDLLDRC 60

Query: 61  RYLLARIAR-RRKRYLASVDFSYDSSSYALNFEDDCREDDEFPFRNFTARFPPPIKERVP 120
           RYL+ARI R  R+RY AS DF+YDSSSYALNFEDD R DDEFP RNF AR P     R+P
Sbjct: 61  RYLVARIGRGSRRRYHASPDFTYDSSSYALNFEDDSRYDDEFPLRNFAARLP-----RLP 118

Query: 121 AAKFAGSEDGIS 132
           AAKFAGS+ G+S
Sbjct: 121 AAKFAGSQAGVS 118

[Close]

BLAST of CmoCh05G003690 vs. TAIR 10
Match: AT5G11070.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.4 bits (137), Expect = 1.0e-08
Identity = 41/116 (35.34%), Postives = 53/116 (45.69%), Query Frame = 0


Query: 14  KLKSSFCCFHG---FQQDDFLDSPSKSPTRSPCSWFKSTVGEFRGILARCRYLLARI--- 73
           +++S  CC       + +  +    +   RSP  W KST  E   +  RCR + +RI   
Sbjct: 21  RMRSPICCIGANAVVEPEAMMIGGEQRTPRSPYEWLKSTAQELE-LRDRCRRVKSRIKVT 80

Query: 74  -ARRRKRYLASV-----------DFSYDSSSYALNFEDDCREDDEFPFRNFTARFP 112
                  Y   V           DFSYD  SYALNFED+ R DD+  F NFTAR P
Sbjct: 81  CRNNNCAYNNCVHHHHHSQSYPGDFSYDPLSYALNFEDNVRADDDGSFPNFTARLP 135

[Close]

BLAST of CmoCh05G003690 vs. TAIR 10
Match: AT5G35090.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.5e-04
Identity = 23/41 (56.10%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 77  SVDFSYDSSSYALNFEDDCRED--DEFPFRNFTARFP--PP 114
           + DF YD SSYALNF+    +D  D FP RNF+AR P  PP
Sbjct: 102 TADFHYDPSSYALNFDKGDEDDNIDRFPLRNFSARLPHSPP 142

The following BLAST results are available for this feature:

BLAST of CmoCh05G003690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh05G003690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HE78	6.6e-72	100.00	uncharacterized protein LOC111462741 OS=Cucurbita moschata OX=3662 GN=LOC1114627...	[more]
A0A6J1K7R1	8.1e-70	96.24	uncharacterized protein LOC111492424 OS=Cucurbita maxima OX=3661 GN=LOC111492424...	[more]
A0A1S3BDX7	5.5e-34	64.66	uncharacterized protein LOC103488565 OS=Cucumis melo OX=3656 GN=LOC103488565 PE=...	[more]
A0A6J1BQU1	6.0e-33	62.88	uncharacterized protein LOC111004768 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A6J1FP70	2.2e-19	48.80	uncharacterized protein LOC111446022 OS=Cucurbita moschata OX=3662 GN=LOC1114460...	[more]

BLAST of CmoCh05G003690 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962228.1	1.4e-71	100.00	uncharacterized protein LOC111462741 [Cucurbita moschata] >KAG6598557.1 hypothet...	[more]
XP_023546798.1	6.8e-71	99.25	uncharacterized protein LOC111805797 [Cucurbita pepo subsp. pepo]	[more]
XP_022997531.1	1.7e-69	96.24	uncharacterized protein LOC111492424 [Cucurbita maxima]	[more]
XP_008445585.1	1.1e-33	64.66	PREDICTED: uncharacterized protein LOC103488565 [Cucumis melo]	[more]
XP_022131639.1	1.2e-32	62.88	uncharacterized protein LOC111004768 [Momordica charantia]	[more]

BLAST of CmoCh05G003690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11070.1	1.0e-08	35.34	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G35090.1	1.5e-04	56.10	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 12..116
None	No IPR available	PANTHER	PTHR33168:SF61	SUBFAMILY NOT NAMED	coord: 12..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003690.1	CmoCh05G003690.1	mRNA