CmoCh05G003540 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G003540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Eukaryotic translation initiation factor 5A
Location	Cmo_Chr05: 1586049 .. 1588330 (-)
RNA-Seq Expression	CmoCh05G003540
Synteny	CmoCh05G003540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGCGTGAGAAAATACAGCCGCCATATCTAAATTCTAATTTCTAAATACAAAAATCTCTTCTTCTTCTTCCTCTTCCTGGTTTTGTACGGAATTCTTCAATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCCTGTAAGGTATCCCATTACAATCTTCTCTCTTTTTATTTTATGGAAGGAATCGATTCCTTCTTTTCTCTGAAATCTCAATTGCTATGGTTCCGGTTCTACTTTTTAGATAAAATGCTGGTTTCGATTATTGTTGGTTTAATGCCAAACTGTTGCTGCCGCGCTCCTAGATTTACGAATATGCATTGTGTAAATAAGAGAGTGGTGGAGTTTTTTAGGTTGAAATTAGATTTTAATCACTGTTCTTGCCTGTTTGTTTTCAGTAGTTTCCTGTATGATTTAGGGATTTAAAGATGTATCCATTAACCTTTTGTTTGAGTTGTCTTTTATTATATGGTTCAACGAATTAATAGTCGCTTTTCTAAGGATTTCTGAGTTCTACTGACTTCACTTTTATAAGCTTTTGCAATTAACATTCTCAAAAATCTACTACTGATTGGACAGTTCTTAAATAGATTTGATCCTAAATCTCCAACAATAAGGGTTCTAAATGTTATTTTGGTTCAGAGAGACTATCTGATCCTCTTTTTTTTGTTTACTATTGCTTTGTTATGGTGTTTTTACAATTGAATCGCTATGATTTATCATGCATCACTCCCATATTGCTGGATCTAAATGGGTCTCTTTCCATACATTGTTAGAGCATTACAAAAAACTCGTCTCCAATTCTACTTATTATTTGTTCATTCAAGAGGCAAGGTTTGAGAAGTTCTCTTCATGTGCTACCAAAGGAATTCCCAATTGGCATAACTGTGTAGGAGCTTTGATCTTTATATTACTCATTTTAATGATATTATGTTAAAGTAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATATTCACCACCAAAAAACTTGAAGATATTGTCCCATCTTCCCACAACTGTGATGTGAGTATCCCCTTTGTCTTGTTTGCTTATTGTTTTCGTTTTGGTGTGTTTTTAAATGTCGGGTTTGCGTAGCTTTTCTGTCTCACATTCTCCCCATCCCCTCTATAGGTTCCTGAGGTTACTCGTACAGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGTTTCTTCCTAATTATTTGTCTATTTGAGCACGAAAATTTAGGTTGACAAGGGAATTCATGACATTTTTATGTTGATTCCAACTTCGTGGACATCATAGGTCTTTAACTTAATACTGAATAGATACACGTCTTACTGAAAATATTATACTTAACAGAGATTTTCCTGTACAAATATATGATTAGTTCGTATCTTACATGAAGCAGTTTGATCTTTACTTGGGTTAACAATGGAATGGTTAACAAGAAAAAATAAATTGAAGAGTTGAAGGCATATGAACAAGTAACTAATGAAGACTCAGAGATTACCTTGCGAGGTTAAGTTGTTGATTGGTATCAATAGGTTGTCTGCTTTGTGCGGTATTCTGCAAGTCTGAAGCGTTAGTATTGTAGGTTACGACGTCGTGTTGGATATACTTCAATGCAATGATTGACCCACTGAAATCTGGTTTGGTGTTAGGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGGTAAGGCTCTGCACATACTTATTCTCCTAAATACACAAAACCACATGTTTACAAAGGCGTTTCATGCATCTGTTTCAGATTAAAGATGGGTTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAACAAGTCTTCCCTTAAGTTTTAGTTGAGGATATTTATTCTTTTTGAATTTTGGATGTGTTTTTCTTTTTGTAGGAAGTTGTTTAATATTCTCTAAACAATGGACATAGATTTTCATAAGTATAGGGAGTTTCAACTTGTGTACTTTTCTTCTCTCTATTGTCATTCTTTTAATTTTAACCTTAAACGGTGTGAGATCTCACGTCGGGATCTCACGTCGGTTGGAAAGGGGAACAAATATTTTTTATAAGTGGG

mRNA sequence

TGATGCGTGAGAAAATACAGCCGCCATATCTAAATTCTAATTTCTAAATACAAAAATCTCTTCTTCTTCTTCCTCTTCCTGGTTTTGTACGGAATTCTTCAATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATATTCACCACCAAAAAACTTGAAGATATTGTCCCATCTTCCCACAACTGTGATGTTCCTGAGGTTACTCGTACAGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGATTAAAGATGGGTTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAACAAGTCTTCCCTTAAGTTTTAGTTGAGGATATTTATTCTTTTTGAATTTTGGATGTGTTTTTCTTTTTGTAGGAAGTTGTTTAATATTCTCTAAACAATGGACATAGATTTTCATAAGTATAGGGAGTTTCAACTTGTGTACTTTTCTTCTCTCTATTGTCATTCTTTTAATTTTAACCTTAAACGGTGTGAGATCTCACGTCGGGATCTCACGTCGGTTGGAAAGGGGAACAAATATTTTTTATAAGTGGG

Coding sequence (CDS)

ATGTCGGACGAAGAGCATCAATTCGAGTCGAAGGCCGACGCCGGAGCCTCCAAGACCTTCCCTCAGCAGGCCGGAACCATCCGCAAGAATGGTTACCTTGTCATCAAGGGCCGTCCCTGTAAGGTAGTTGAGGTTTCTACGTCCAAGACTGGAAAGCATGGGCATGCTAAATGTCACTTTGTGGCAATTGATATATTCACCACCAAAAAACTTGAAGATATTGTCCCATCTTCCCACAACTGTGATGTTCCTGAGGTTACTCGTACAGATTATCAGCTTATCGACATCTCTGAAGATGGATTTGTGAGCCTCTTGACTGACAACGGAAGCACAAAGGATGATTTGAGGCTTCCTACGGATGATAGTTTACTTACTCAGATTAAAGATGGGTTTGCAGAAGGAAAGGACCTTGTTGTGAGTGTCATGTCAGCCATGGGAGAGGAACAAATCTGTGGCTTGAAGGATATTGGCCCAAAGAGTTAA

Protein sequence

MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS

Homology

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BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 2.8e-82
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNG++VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           D+LLTQIKDGFAEGKDLVVSVMSAMGEEQIC LKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot
Match: P56336 (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 3.1e-81
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRK+GY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           DSLL+QIKDGFAEGKDLVVSVMSAMGEEQI  LKDIGPK
Sbjct: 121 DSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot
Match: Q945F4 (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-80
Identity = 146/159 (91.82%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FE  ADAGASKT+PQQAGTIRKNGY+VIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNGSTKDDL+LPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           DSLLTQIKDGFA+GKDLVVSVMSAMGEEQIC LKDIGPK
Sbjct: 121 DSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot
Match: Q9AXQ4 (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-80
Identity = 147/159 (92.45%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LL+ IKDGFAEGKDLVVSVMSAMGEEQI  LKDIGPK
Sbjct: 121 ENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 7.6e-80
Identity = 143/159 (89.94%), Postives = 153/159 (96.23%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRK+G++VIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           D+LL Q+KDGFAEGKDLV+SVMSAMGEEQICG+KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL
Match: A0A6J1HCD8 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111462714 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.7e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL
Match: A0A0A0LPT1 (Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G382670 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KK+EDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           +SLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 ESLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL
Match: A0A1S3BC90 (Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488350 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 154/160 (96.25%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           +SLL QIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 ESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL
Match: A0A7J6FBY3 (Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=F8388_022844 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 150/159 (94.34%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKT+PQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLTDNG+TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLKLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           DSLLTQIKDGFA+GKDLVVSVMSAMGEEQIC LKDIGPK
Sbjct: 121 DSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL
Match: A0A5A7QIP3 (Eukaryotic translation initiation factor 5A OS=Striga asiatica OX=4170 GN=STAS_20638 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 150/160 (93.75%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRLPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           D+LL+QIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]

BLAST of CmoCh05G003540 vs. NCBI nr
Match: XP_022962181.1 (eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_023545516.1 eukaryotic translation initiation factor 5A-2-like [Cucurbita pepo subsp. pepo] >KAG6598545.1 Eukaryotic translation initiation factor 5A-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029478.1 Eukaryotic translation initiation factor 5A-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 7.6e-85
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 160

[Close]

BLAST of CmoCh05G003540 vs. NCBI nr
Match: XP_008445267.1 (PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP_038884938.1 eukaryotic translation initiation factor 5A-4-like [Benincasa hispida])

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-82
Identity = 154/160 (96.25%), Postives = 157/160 (98.12%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           +SLL QIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 ESLLAQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of CmoCh05G003540 vs. NCBI nr
Match: XP_004138702.1 (eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypothetical protein Csa_022421 [Cucumis sativus])

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-82
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTFPQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KK+EDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKVEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKS 161
           +SLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK+
Sbjct: 121 ESLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPKN 160

[Close]

BLAST of CmoCh05G003540 vs. NCBI nr
Match: KAG8366406.1 (hypothetical protein BUALT_Bualt17G0076300 [Buddleja alternifolia])

HSP 1 Score: 309.3 bits (791), Expect = 1.9e-80
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGY+VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V RTDYQLIDISEDGFVSLLT+NG+TKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. NCBI nr
Match: AFP44116.1 (eukaryotic translation initiation factor [Lycoris longituba])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP VTRTDYQLIDISEDGFVSLLT+NG+TKDDLRLPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLTQIKDGF+EGKDLVVSVMSAMGEEQICGLKDIGPK
Sbjct: 121 EALLTQIKDGFSEGKDLVVSVMSAMGEEQICGLKDIGPK 159

[Close]

BLAST of CmoCh05G003540 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 282.7 bits (722), Expect = 1.8e-76
Identity = 140/159 (88.05%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FES +DAGASKT+PQQAGTIRKNGY+VIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V RTDYQLIDISEDG+VSLLTDNGSTKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           D+LL QIK GF +GKDLVVSVMSAMGEEQI  LKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of CmoCh05G003540 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 281.6 bits (719), Expect = 4.0e-76
Identity = 135/159 (84.91%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EH FES +DAGASKT+PQQAG IRK G++VIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT+KKLEDIVPSSHNCDVP V R DYQLIDISEDGFVSLLTDNGSTKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIGPK 160
           ++LLTQ+K+GF EGKD+VVSVMSAMGEEQ+C LK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of CmoCh05G003540 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.8e-68
Identity = 122/157 (77.71%), Postives = 140/157 (89.17%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EH FE+ +++GASKT+PQ AG IRK G++VIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V R DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICGLKDIG 158
           D L  Q++ GF EGKD+VVSVMS+MGEEQIC +K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of CmoCh05G003540 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 212.2 bits (539), Expect = 3.0e-55
Identity = 101/127 (79.53%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MSDEEHQFESKADAGASKTFPQQAGTIRKNGYLVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EH FE+ +++GASKT+PQ AG IRK G++VIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFTTKKLEDIVPSSHNCDVPEVTRTDYQLIDISEDGFVSLLTDNGSTKDDLRLPTD 120
           VAIDIFT KKLEDIVPSSHNCDVP V R DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DSLLTQI 128
           D L  Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of CmoCh05G003540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24922	2.8e-82	93.71	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
P56336	3.1e-81	93.71	Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q945F4	3.4e-80	91.82	Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa OX=3879 PE=2 SV...	[more]
Q9AXQ4	3.4e-80	92.45	Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum OX=4081 PE...	[more]
P56337	7.6e-80	89.94	Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI...	[more]

BLAST of CmoCh05G003540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCD8	3.7e-85	100.00	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0A0LPT1	2.2e-82	96.25	Eukaryotic translation initiation factor 5A OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A1S3BC90	2.2e-82	96.25	Eukaryotic translation initiation factor 5A OS=Cucumis melo OX=3656 GN=LOC103488...	[more]
A0A7J6FBY3	1.2e-80	94.34	Eukaryotic translation initiation factor 5A OS=Cannabis sativa OX=3483 GN=F8388_...	[more]
A0A5A7QIP3	1.2e-80	93.75	Eukaryotic translation initiation factor 5A OS=Striga asiatica OX=4170 GN=STAS_2...	[more]

BLAST of CmoCh05G003540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962181.1	7.6e-85	100.00	eukaryotic translation initiation factor 5A-2-like [Cucurbita moschata] >XP_0235...	[more]
XP_008445267.1	4.6e-82	96.25	PREDICTED: eukaryotic translation initiation factor 5A-4-like [Cucumis melo] >XP...	[more]
XP_004138702.1	4.6e-82	96.25	eukaryotic translation initiation factor 5A-2 [Cucumis sativus] >KGN62994.1 hypo...	[more]
KAG8366406.1	1.9e-80	94.97	hypothetical protein BUALT_Bualt17G0076300 [Buddleja alternifolia]	[more]
AFP44116.1	2.5e-80	94.34	eukaryotic translation initiation factor [Lycoris longituba]	[more]

BLAST of CmoCh05G003540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	1.8e-76	88.05	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	4.0e-76	84.91	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	1.8e-68	77.71	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	3.0e-55	79.53	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 3.7E-32 score: 122.8
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 86..154 e-value: 1.2E-28 score: 99.0
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 18..152 e-value: 5.6E-40 score: 134.2
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 4.8E-66 score: 219.1
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 7.5E-43 score: 146.3
None	No IPR available	GENE3D	2.40.50.140		coord: 86..159 e-value: 8.6E-35 score: 120.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 2.00169E-31 score: 105.697
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G003540.1	CmoCh05G003540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding