CmoCh05G003330 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTATTCTGTAATAACTTTATAATTAAAGCATTTATCTGAAAACAACTATGATATATTGGATATGACAAAGCTCTGTTTCTATCTAATACATAAATTCCATCTCACCTCTTAACAAAACAACCGGCAAGAAAGTTAAGACCAACATTTACCGACCGCCCCCACGGCCCTTAAGAATTATACACACGGCTGAGAGGATAAACATCCAAGGCTGGGCAGAGCCCCTGTCCTGTCGGATAAACCCCCCCACCGAACCCACTCGAATCCAATCCGACCCATCAAAACGAACATGCTTTCGAATATTCCTCTGCCATTTCCCCATTTTAAACCCCGAAACCCACAACTCTTCTACCTTGTCTTTTTTCATCATGAACTACTCTGTTTCTTCTTCTTCTTCTTCTTCTCTCTCCGACCAGCTTCACCTCCTTGGAAAAGCTGAGGTTTTTAAACTCCATGGTCGTGATAGAGCTGGCCGCAATGTGTTCCTCATTGTCGGAAAACACTTTCCAGGTACCGACTTTCAAAACAGAGTGTGAGTGTGAGTGTGCTCTGTTTTACTTATGGTGATTGCTGTTTTGGTTTCAGCTCGGTTCGTGAGCACCCAGGCTGTGAATCTCTATCTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCCTTCACGTTGGTGTACATTCACACAGATGTTCATTGGACAGAGAATTTCCCTGGAATCTCCAATCTCAAGGCAATCTATGAGTTCATTCCAACCACCATTAAGTACAACCTTAAAGCTGTTTATTTTGTCCACCCCAGTTTGCAGGCTCGTCTGTTCTTCGCCACTGTCGGCCGCCTAATTCTGGGCGCCGAGTAAGCATTCTTCCTCCCCTGAATTTGAACTTCCCATTGCTCAAAAAGCCAAAAAGACCATATCTTTATGGTGGGATTCTTTATTTGTTGACTTGCAGGCTGTATAACAAAGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAGTATGTTAGAAGGAAAGAGATAGAGTTACCGGAGTTTGTGTATGATTATGATGAGAAATTGGAGTTCTGTCCTGTGATGGACTCTGGTTTGGAGAGTGATTATCTCAGGCTCTTCTCCGCCTCGCCGTCTGTGGATTCTGCGGTTTCTACGTACTCCTCCATGAGGTGTTTTGCTTGATGGTGAAGACTCAAAGATGGAGTTGGGATACATGGGTCTTTTTGGGTTTTGTTGTAGGAGTTCTTTTGGAAGTAGTGGTAGTAAATATTGTGAGTAGGGACTCTCTGTAGGCAAAGTTAAAAGGTTTATGAGCTTTCCTTATAAAGAAACAAATATAAAGGCAGATGATTCTTCTGAACTCAGCTCCACTAGTTTCTCCCTGCATATGCTCCCAATTCATAATTACGATAGCTTCAACAGGCTACTAACATGATACGCCATAAATACATACATACAGTGGTCGATAGGAACTCTTTGGCTTCCTGTAGTTTCTAGCCCTTCATTCAAAGTCTCATGTCACGTGAGTGGATTTGGTTTCCTCGGTCATTCTGGGAATCTGATAGCTATCACTTACTAGTCAATGAAAGTGAGGTCAGTTTCAGTCTTCTTCATAGTAGTTTGAAAGTCAGTGTCATGTACTTGCTTATGGAATTATGTGTTAAGCATATCGATGTGGAAGTTGACTGATTTCCTCTGGGCAGACCGTCAAA TTTATTCTGTAATAACTTTATAATTAAAGCATTTATCTGAAAACAACTATGATATATTGGATATGACAAAGCTCTGTTTCTATCTAATACATAAATTCCATCTCACCTCTTAACAAAACAACCGGCAAGAAAGTTAAGACCAACATTTACCGACCGCCCCCACGGCCCTTAAGAATTATACACACGGCTGAGAGGATAAACATCCAAGGCTGGGCAGAGCCCCTGTCCTGTCGGATAAACCCCCCCACCGAACCCACTCGAATCCAATCCGACCCATCAAAACGAACATGCTTTCGAATATTCCTCTGCCATTTCCCCATTTTAAACCCCGAAACCCACAACTCTTCTACCTTGTCTTTTTTCATCATGAACTACTCTGTTTCTTCTTCTTCTTCTTCTTCTCTCTCCGACCAGCTTCACCTCCTTGGAAAAGCTGAGGTTTTTAAACTCCATGGTCGTGATAGAGCTGGCCGCAATGTGTTCCTCATTGTCGGAAAACACTTTCCAGCTCGGTTCGTGAGCACCCAGGCTGTGAATCTCTATCTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCCTTCACGTTGGTGTACATTCACACAGATGTTCATTGGACAGAGAATTTCCCTGGAATCTCCAATCTCAAGGCAATCTATGAGTTCATTCCAACCACCATTAAGTACAACCTTAAAGCTGTTTATTTTGTCCACCCCAGTTTGCAGGCTCGTCTGTTCTTCGCCACTGTCGGCCGCCTAATTCTGGGCGCCGAGCTGTATAACAAAGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAGTATGTTAGAAGGAAAGAGATAGAGTTACCGGAGTTTGTGTATGATTATGATGAGAAATTGGAGTTCTGTCCTGTGATGGACTCTGGTTTGGAGAGTGATTATCTCAGGCTCTTCTCCGCCTCGCCGTCTGTGGATTCTGCGGTTTCTACGTACTCCTCCATGAGGTGTTTTGCTTGATGGTGAAGACTCAAAGATGGAGTTGGGATACATGGGTCTTTTTGGGTTTTGTTGTAGGAGTTCTTTTGGAAGTAGTGGTAGTAAATATTGTGAGTAGGGACTCTCTGTAGGCAAAGTTAAAAGGTTTATGAGCTTTCCTTATAAAGAAACAAATATAAAGGCAGATGATTCTTCTGAACTCAGCTCCACTAGTTTCTCCCTGCATATGCTCCCAATTCATAATTACGATAGCTTCAACAGGCTACTAACATGATACGCCATAAATACATACATACAGTGGTCGATAGGAACTCTTTGGCTTCCTGTAGTTTCTAGCCCTTCATTCAAAGTCTCATGTCACGTGAGTGGATTTGGTTTCCTCGGTCATTCTGGGAATCTGATAGCTATCACTTACTAGTCAATGAAAGTGAGGTCAGTTTCAGTCTTCTTCATAGTAGTTTGAAAGTCAGTGTCATGTACTTGCTTATGGAATTATGTGTTAAGCATATCGATGTGGAAGTTGACTGATTTCCTCTGGGCAGACCGTCAAA ATGAACTACTCTGTTTCTTCTTCTTCTTCTTCTTCTCTCTCCGACCAGCTTCACCTCCTTGGAAAAGCTGAGGTTTTTAAACTCCATGGTCGTGATAGAGCTGGCCGCAATGTGTTCCTCATTGTCGGAAAACACTTTCCAGCTCGGTTCGTGAGCACCCAGGCTGTGAATCTCTATCTGAAGGATAAGATTTTCCCCTTCCTCAAAGATGGGCCCTTCACGTTGGTGTACATTCACACAGATGTTCATTGGACAGAGAATTTCCCTGGAATCTCCAATCTCAAGGCAATCTATGAGTTCATTCCAACCACCATTAAGTACAACCTTAAAGCTGTTTATTTTGTCCACCCCAGTTTGCAGGCTCGTCTGTTCTTCGCCACTGTCGGCCGCCTAATTCTGGGCGCCGAGCTGTATAACAAAGTGAAATATGTGAAAAGAGTGGAGTTTCTATGGGAGTATGTTAGAAGGAAAGAGATAGAGTTACCGGAGTTTGTGTATGATTATGATGAGAAATTGGAGTTCTGTCCTGTGATGGACTCTGGTTTGGAGAGTGATTATCTCAGGCTCTTCTCCGCCTCGCCGTCTGTGGATTCTGCGGTTTCTACGTACTCCTCCATGAGGTGTTTTGCTTGA MNYSVSSSSSSSLSDQLHLLGKAEVFKLHGRDRAGRNVFLIVGKHFPARFVSTQAVNLYLKDKIFPFLKDGPFTLVYIHTDVHWTENFPGISNLKAIYEFIPTTIKYNLKAVYFVHPSLQARLFFATVGRLILGAELYNKVKYVKRVEFLWEYVRRKEIELPEFVYDYDEKLEFCPVMDSGLESDYLRLFSASPSVDSAVSTYSSMRCFA Homology
BLAST of CmoCh05G003330 vs. ExPASy Swiss-Prot
Match: Q5CZL1 (Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis OX=8364 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 9.0e-12 Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy Swiss-Prot
Match: A7T167 (Protein GDAP2 homolog OS=Nematostella vectensis OX=45351 GN=gdap2 PE=3 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11 Identity = 46/147 (31.29%), Postives = 80/147 (54.42%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy Swiss-Prot
Match: Q66HX8 (Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio OX=7955 GN=gdap2 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 5.8e-11 Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy Swiss-Prot
Match: Q9DBL2 (Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus OX=10090 GN=Gdap2 PE=1 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 5.8e-11 Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy Swiss-Prot
Match: Q66H63 (Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus OX=10116 GN=Gdap2 PE=2 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 7.6e-11 Identity = 45/163 (27.61%), Postives = 80/163 (49.08%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy TrEMBL
Match: A0A6J1KC43 (protein GDAP2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111491951 PE=4 SV=1) HSP 1 Score: 399.8 bits (1026), Expect = 6.9e-108 Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy TrEMBL
Match: A0A1S4DW79 (ganglioside-induced differentiation-associated protein 2-like OS=Cucumis melo OX=3656 GN=LOC107990288 PE=4 SV=1) HSP 1 Score: 347.8 bits (891), Expect = 3.1e-92 Identity = 171/206 (83.01%), Postives = 192/206 (93.20%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy TrEMBL
Match: A0A5A7VHB1 (Ganglioside-induced differentiation-associated protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001720 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92 Identity = 173/210 (82.38%), Postives = 192/210 (91.43%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy TrEMBL
Match: A0A0A0LML6 (CRAL-TRIO domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G348170 PE=4 SV=1) HSP 1 Score: 347.4 bits (890), Expect = 4.1e-92 Identity = 170/204 (83.33%), Postives = 191/204 (93.63%), Query Frame = 0
BLAST of CmoCh05G003330 vs. ExPASy TrEMBL
Match: A0A6J1HFG8 (protein GDAP2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111462564 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87 Identity = 163/171 (95.32%), Postives = 166/171 (97.08%), Query Frame = 0
BLAST of CmoCh05G003330 vs. NCBI nr
Match: KAG7029460.1 (Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 412.1 bits (1058), Expect = 2.8e-111 Identity = 209/212 (98.58%), Postives = 209/212 (98.58%), Query Frame = 0
BLAST of CmoCh05G003330 vs. NCBI nr
Match: KAG6598524.1 (Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 411.8 bits (1057), Expect = 3.6e-111 Identity = 209/213 (98.12%), Postives = 209/213 (98.12%), Query Frame = 0
BLAST of CmoCh05G003330 vs. NCBI nr
Match: KAG6598528.1 (Protein GDAP2-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110 Identity = 208/214 (97.20%), Postives = 208/214 (97.20%), Query Frame = 0
BLAST of CmoCh05G003330 vs. NCBI nr
Match: XP_023546880.1 (protein GDAP2 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 404.8 bits (1039), Expect = 4.4e-109 Identity = 204/210 (97.14%), Postives = 206/210 (98.10%), Query Frame = 0
BLAST of CmoCh05G003330 vs. NCBI nr
Match: XP_022996823.1 (protein GDAP2 homolog [Cucurbita maxima]) HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107 Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0
BLAST of CmoCh05G003330 vs. TAIR 10
Match: AT4G35750.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 224.9 bits (572), Expect = 5.9e-59 Identity = 109/203 (53.69%), Postives = 150/203 (73.89%), Query Frame = 0
BLAST of CmoCh05G003330 vs. TAIR 10
Match: AT3G10210.1 (SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein ) HSP 1 Score: 162.2 bits (409), Expect = 4.7e-40 Identity = 78/172 (45.35%), Postives = 114/172 (66.28%), Query Frame = 0
BLAST of CmoCh05G003330 vs. TAIR 10
Match: AT1G69340.1 (appr-1-p processing enzyme family protein ) HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10 Identity = 40/165 (24.24%), Postives = 89/165 (53.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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