CmoCh05G002010 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G002010
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr05: 873078 .. 873470 (+)
RNA-Seq Expression	CmoCh05G002010
Synteny	CmoCh05G002010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG

mRNA sequence

ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG

Coding sequence (CDS)

ATGTTCCACAGCAAGTTAAGCACCTCTGATATTGATGTGAGAACGTTGAAGTTCTTACTTGCTCTTCTCCGTAGCTACAAGCTTTCTGGAGTCGAAAAGGTGAAGGGATTCTGCAGAAAACTAATATCTGAAACATTGGTGATCATCTCGTGCATGAAACATCTTTATGCATCTAATGAGATGGAGGAGGTCATCTTGGAATTGGAAAAGCTTTTTATCTCAGGACCAACGGCCTCAGATGCTCTGTTATATGAATGCAAATCAGGTTTGGTTCCTTTCTTGGCAGGACTTGCACACATTAAAATGATAGAAACCGATGATAATGCAAAAAGCTGTGCTGTGTGGGAGTTATATCATATGTTATTTAAAGAGCGGCATTGGGCATTTCANTAG

Protein sequence

MFHSKLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEVILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKERHWAFX

Homology

[Close]

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL
Match: A0A6J1GBD2 (uncharacterized protein LOC111452603 OS=Cucurbita moschata OX=3662 GN=LOC111452603 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL
Match: A0A6J1IF25 (uncharacterized protein LOC111473635 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473635 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLAL+RSYKLSGVEKVKGFCRKLISETL IISCMKHLYA NEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALIRSYKLSGVEKVKGFCRKLISETLGIISCMKHLYACNEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKM ET+DNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMTETEDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL
Match: A0A6J1ICL6 (uncharacterized protein LOC111473635 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111473635 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.9e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLAL+RSYKLSGVEKVKGFCRKLISETL IISCMKHLYA NEMEEV
Sbjct: 651 KLSTSDIDVRTLKFLLALIRSYKLSGVEKVKGFCRKLISETLGIISCMKHLYACNEMEEV 710

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKM ET+DNAKSCAVWELYHMLFKE
Sbjct: 711 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMTETEDNAKSCAVWELYHMLFKE 770

Query: 125 RHWAF 130
           RHWAF
Sbjct: 771 RHWAF 775

[Close]

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL
Match: A0A6J1CYX4 (uncharacterized protein LOC111016053 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016053 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.3e-58
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLR YK+SGV +VKGFCRKLISETL IISCMKHLYASNEMEEV
Sbjct: 706 KLSTSDIDVRTLKFLLALLRGYKISGVGEVKGFCRKLISETLGIISCMKHLYASNEMEEV 765

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASD LLYECKSGL PFLAGLAHIKM ETDDNAKSCAVWELYHMLFKE
Sbjct: 766 ILELEKLFISGPTASDPLLYECKSGLAPFLAGLAHIKMTETDDNAKSCAVWELYHMLFKE 825

Query: 125 RHWA 129
           RHWA
Sbjct: 826 RHWA 829

[Close]

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL
Match: A0A6J1CYY2 (uncharacterized protein LOC111016053 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111016053 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 5.3e-58
Identity = 116/124 (93.55%), Postives = 118/124 (95.16%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLR YK+SGV +VKGFCRKLISETL IISCMKHLYASNEMEEV
Sbjct: 527 KLSTSDIDVRTLKFLLALLRGYKISGVGEVKGFCRKLISETLGIISCMKHLYASNEMEEV 586

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASD LLYECKSGL PFLAGLAHIKM ETDDNAKSCAVWELYHMLFKE
Sbjct: 587 ILELEKLFISGPTASDPLLYECKSGLAPFLAGLAHIKMTETDDNAKSCAVWELYHMLFKE 646

Query: 125 RHWA 129
           RHWA
Sbjct: 647 RHWA 650

[Close]

BLAST of CmoCh05G002010 vs. NCBI nr
Match: XP_022949176.1 (uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949184.1 uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949192.1 uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949198.1 uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949206.1 uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949215.1 uncharacterized protein LOC111452603 [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 8.7e-63
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]

BLAST of CmoCh05G002010 vs. NCBI nr
Match: KAG7028781.1 (hypothetical protein SDJN02_09962, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYAS+EMEEV
Sbjct: 706 KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASSEMEEV 765

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE
Sbjct: 766 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 825

Query: 125 RHWAF 130
           RHWAF
Sbjct: 826 RHWAF 830

[Close]

BLAST of CmoCh05G002010 vs. NCBI nr
Match: KAG6597314.1 (Self-incompatibility protein S1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYAS+EMEEV
Sbjct: 718 KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASSEMEEV 777

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE
Sbjct: 778 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 837

Query: 125 RHWAF 130
           RHWAF
Sbjct: 838 RHWAF 842

[Close]

BLAST of CmoCh05G002010 vs. NCBI nr
Match: XP_023540692.1 (uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo] >XP_023540693.1 uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo] >XP_023540694.1 uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo] >XP_023540695.1 uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo] >XP_023540696.1 uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-62
Identity = 124/125 (99.20%), Postives = 125/125 (100.00%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV
Sbjct: 702 KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 761

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIET+DNAKSCAVWELYHMLFKE
Sbjct: 762 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETNDNAKSCAVWELYHMLFKE 821

Query: 125 RHWAF 130
           RHWAF
Sbjct: 822 RHWAF 826

[Close]

BLAST of CmoCh05G002010 vs. NCBI nr
Match: XP_022974865.1 (uncharacterized protein LOC111473635 isoform X1 [Cucurbita maxima])

HSP 1 Score: 241.5 bits (615), Expect = 4.0e-60
Identity = 120/125 (96.00%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           KLSTSDIDVRTLKFLLAL+RSYKLSGVEKVKGFCRKLISETL IISCMKHLYA NEMEEV
Sbjct: 703 KLSTSDIDVRTLKFLLALIRSYKLSGVEKVKGFCRKLISETLGIISCMKHLYACNEMEEV 762

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKM ET+DNAKSCAVWELYHMLFKE
Sbjct: 763 ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMTETEDNAKSCAVWELYHMLFKE 822

Query: 125 RHWAF 130
           RHWAF
Sbjct: 823 RHWAF 827

[Close]

BLAST of CmoCh05G002010 vs. TAIR 10
Match: AT1G04650.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 104.8 bits (260), Expect = 5.5e-23
Identity = 58/124 (46.77%), Postives = 78/124 (62.90%), Query Frame = 0


Query: 5   KLSTSDIDVRTLKFLLALLRSYKLSGVEKVKGFCRKLISETLVIISCMKHLYASNEMEEV 64
           K+S S+ID +TL F++AL++ Y+ S  E  K    +++SETL IIS  + LY   EM+ V
Sbjct: 705 KMSISEIDAKTLNFVVALIQKYRNSKDETTKERYSEILSETLSIISRSEQLYTCQEMDNV 764

Query: 65  ILELEKLFISGPTASDALLYECKSGLVPFLAGLAHIKMIETDDNAKSCAVWELYHMLFKE 124
           I EL+KLF S        L + K  L  FL+GL+  +M ET    KS AVWELYHML ++
Sbjct: 765 ITELQKLFNSETNHHHNHLRKSKPNLALFLSGLSKYEMSETKKCPKSIAVWELYHMLLRK 824

Query: 125 RHWA 129
           RHWA
Sbjct: 825 RHWA 828

The following BLAST results are available for this feature:

BLAST of CmoCh05G002010 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh05G002010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GBD2	4.2e-63	100.00	uncharacterized protein LOC111452603 OS=Cucurbita moschata OX=3662 GN=LOC1114526...	[more]
A0A6J1IF25	1.9e-60	96.00	uncharacterized protein LOC111473635 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1ICL6	1.9e-60	96.00	uncharacterized protein LOC111473635 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CYX4	5.3e-58	93.55	uncharacterized protein LOC111016053 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CYY2	5.3e-58	93.55	uncharacterized protein LOC111016053 isoform X3 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CmoCh05G002010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949176.1	8.7e-63	100.00	uncharacterized protein LOC111452603 [Cucurbita moschata] >XP_022949184.1 unchar...	[more]
KAG7028781.1	3.3e-62	99.20	hypothetical protein SDJN02_09962, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6597314.1	3.3e-62	99.20	Self-incompatibility protein S1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023540692.1	3.3e-62	99.20	uncharacterized protein LOC111800982 [Cucurbita pepo subsp. pepo] >XP_023540693....	[more]
XP_022974865.1	4.0e-60	96.00	uncharacterized protein LOC111473635 isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh05G002010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04650.1	5.5e-23	46.77	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027902	Protein of unknown function DUF4487	PFAM	PF14868	DUF4487	coord: 39..128 e-value: 3.0E-23 score: 82.4
None	No IPR available	PANTHER	PTHR36702	HOLLIDAY JUNCTION RESOLVASE	coord: 4..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G002010.1	CmoCh05G002010.1	mRNA