CmoCh05G001760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G001760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	BHLH transcription factor
Location	Cmo_Chr05: 764159 .. 765057 (+)
RNA-Seq Expression	CmoCh05G001760
Synteny	CmoCh05G001760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACCACTTTCTTTCACCTTCTTCATCTTCTTCTTCTTCTGCAAGTTTCTATAAGATTCGAGCCTTCGACTATTATTGTACTTCCATATCTTTCTTATTCGTCTTTTTTGTATTTCTAATTATTTATTGAGAGGGATTGGCGATGGGATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGATTTTGGGAGTTCCACTTCACACCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCTGCCACCCCAAACTCCCACACGGTACGTATCATACATACTCTAAACTACAAATCATATGTTGCACCCAAATATGTTTTTGCACAAAATGTATTCCAAAGATTCAATTTTTAAAAATAGGTGGTCTCATCAGTTGATTATTATTTCAGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCTGCCTTTCGCTTTCCGGCAGCGATGTCCGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA

mRNA sequence

ATACCACTTTCTTTCACCTTCTTCATCTTCTTCTTCTTCTGCAAGTTTCTATAAGATTCGAGCCTTCGACTATTATTGTACTTCCATATCTTTCTTATTCGTCTTTTTTGTATTTCTAATTATTTATTGAGAGGGATTGGCGATGGGATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGATTTTGGGAGTTCCACTTCACACCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCTGCCTTTCGCTTTCCGGCAGCGATGTCCGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA

Coding sequence (CDS)

ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGATTTTGGGAGTTCCACTTCACACCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCTGCCTTTCGCTTTCCGGCAGCGATGTCCGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA

Protein sequence

MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA

Homology

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BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 4.5e-40
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 68  NSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERI 127
           NS+      +M AMREMI+RIA MQPI IDPEAVKPPKRRNV+ISKDPQSVAARHRRERI
Sbjct: 85  NSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144

Query: 128 SERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 169
           SERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSL+
Sbjct: 145 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185

[Close]

BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 7.2e-38
Identity = 102/181 (56.35%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 3   VLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSST-ASMNNATHPLAP--PCPP 62
           ++ QME   E F         S+   NP P  +   + S+T     N TH   P     P
Sbjct: 11  MMQQMEKLPEHF---------SNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMP 70

Query: 63  PHSP------AATPNSHTKQQQD------SMGAMREMIYRIAAMQPIQIDPEAVKPPKRR 122
            H P      A +P+S   +++       +M AMREMI+RIA MQPI IDPE+VKPPKR+
Sbjct: 71  HHQPGLNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRK 130

Query: 123 NVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 169
           NV+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSL
Sbjct: 131 NVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 182

[Close]

BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot
Match: Q9LXD8 (Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-32
Identity = 78/119 (65.55%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 58  PPPHSPAATPNSHTKQQQD---------SMGAMREMIYRIAAMQPIQIDPEAVKPPKRRN 117
           PP  S   T    +  Q+D          +GAM+EM+Y+IAAMQ + IDP  VK PKRRN
Sbjct: 63  PPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRN 122

Query: 118 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 168
           V+IS DPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAI YVKFLK Q++ L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot
Match: O81313 (Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3)

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-28
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 58  PPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQS 117
           PPP +         ++  + M AM+EM Y IA MQP+ IDP  V  P RRNV+IS DPQ+
Sbjct: 67  PPPET--LIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQT 126

Query: 118 VAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 169
           V AR RRERISE+IRIL+RIVPGG KMDTASMLDEAI Y KFLK QV+ LQ
Sbjct: 127 VVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.8e-27
Identity = 66/115 (57.39%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120
           HS   + N   +   +++  M+EMIYR AA +P+    E V+ PKR+NVKIS DPQ+VAA
Sbjct: 227 HSTCLSDN--VEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAA 286

Query: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRP 176
           R RRERISE+IR+LQ +VPGGTKMDTASMLDEA +Y+KFL++QV++L+   N RP
Sbjct: 287 RQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE---NLRP 336

[Close]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL
Match: A0A6J1HET7 (transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111462825 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.1e-109
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP 60
           MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP
Sbjct: 1   MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP 60

Query: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120
           HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA
Sbjct: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120

Query: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR 180
           RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR
Sbjct: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR 180

Query: 181 FPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           FPAAMSAGGSNYKQFQFAQSGHEHVEDA
Sbjct: 181 FPAAMSAGGSNYKQFQFAQSGHEHVEDA 208

[Close]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL
Match: A0A6J1KA10 (transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111492009 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.3e-97
Identity = 198/219 (90.41%), Postives = 200/219 (91.32%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFT-------DFGSS----TSHRFQNPTPPILPSYALSSTASMNNA 60
           MDVLTQMENFSE+FEFT        FGSS    TS RFQNPT PILPSYALSSTASMNNA
Sbjct: 1   MDVLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPT-PILPSYALSSTASMNNA 60

Query: 61  THPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120
           THPLAPPC PPHS AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV
Sbjct: 61  THPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120

Query: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQI 180
           KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK+QVQ LQI
Sbjct: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQI 180

Query: 181 AANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           AANNRPSSAF FPAAMSAGGSNYKQF FAQSGHEHVEDA
Sbjct: 181 AANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHVEDA 218

[Close]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL
Match: A0A1S3BA85 (transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103487880 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 3.0e-47
Identity = 131/232 (56.47%), Postives = 153/232 (65.95%), Query Frame = 0


Query: 4   LTQMENFSEFFEFT------DFGSSTSHRFQNPTPPILPSY--ALSSTASMNNATHPLAP 63
           + +M  F E FE+       DFG  +S+   + +  I PS+     +T SMNNATHP+AP
Sbjct: 3   IEEMGKFGENFEYNEIATTLDFGFGSSN-IASTSHLIFPSFNNIPPTTLSMNNATHPVAP 62

Query: 64  PCPPPHSPAATPNSH---------------TKQQQDSM-GAMREMIYRIAAMQPIQIDPE 123
           P  PP+S AA   SH                  + +SM G MREMIYRIAAMQPI+IDPE
Sbjct: 63  PSFPPYSAAARWRSHFPATRNSGTTGEEEVEGSESESMGGGMREMIYRIAAMQPIEIDPE 122

Query: 124 AVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 183
           AVK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY+KF
Sbjct: 123 AVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKF 182

Query: 184 LKSQVQSLQIAANNRPSSAFRFPAAMSAGGSNYKQF-----QFAQSGHEHVE 207
           LK+Q+ SLQIAA +  SSA+ FP   +    N KQ      QF    H H++
Sbjct: 183 LKNQLHSLQIAAASSSSSAYVFP---TVAHYNNKQHLIHFPQFPTHPHHHLD 230

[Close]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL
Match: A0A0A0LRA8 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357190 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.7e-45
Identity = 126/225 (56.00%), Postives = 145/225 (64.44%), Query Frame = 0


Query: 4   LTQMENFSEFFEFTDFGSST-----SHRFQNPTPPILPSY--ALSSTASMNNATHPLAPP 63
           + +M  F E FE  +  +S      S    + + PI PS+     +T SMNNATH +APP
Sbjct: 3   IEEMGKFGENFECNEIATSLDFGFGSSNITSTSHPIFPSFNNIPPTTLSMNNATHAVAPP 62

Query: 64  CPPPHSPA--------ATPNSHTK--------QQQDSM-GAMREMIYRIAAMQPIQIDPE 123
             PP+S A        AT NS  K         + +SM G MREMIYRIAAMQPI+IDPE
Sbjct: 63  SFPPYSAAARWRSHFPATRNSRMKAGEEEVEGSESESMGGGMREMIYRIAAMQPIEIDPE 122

Query: 124 AVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKF 183
           AVK PKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHY+KF
Sbjct: 123 AVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYLKF 182

Query: 184 LKSQVQSLQIAA-----NNRPSSAFRFPAAMSAGGSNYKQFQFAQ 200
           LK+Q+ SLQIAA     ++  SSA+ FP              F Q
Sbjct: 183 LKNQLHSLQIAAASSSSSSSSSSAYAFPTIAHYNNKQQHLIHFPQ 227

[Close]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL
Match: A0A6A4L9H7 (BHLH domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10933 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.7e-45
Identity = 103/137 (75.18%), Postives = 115/137 (83.94%), Query Frame = 0


Query: 73  QQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIR 132
           Q+++SM AMREMI+RIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIR
Sbjct: 94  QKRNSMAAMREMIFRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIR 153

Query: 133 ILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFRFPAAMSAGG--S 192
           ILQR+VPGGTKMDTASMLDEAIHYVKFLK+QVQSL+ AA NRP++   FP A+ +GG   
Sbjct: 154 ILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPAAGLGFPVAVGSGGFVP 213

Query: 193 NYKQFQFAQSGHEHVED 208
             K FQ    G +   D
Sbjct: 214 VAKGFQLGSQGVQQYAD 230

[Close]

BLAST of CmoCh05G001760 vs. NCBI nr
Match: XP_022962355.1 (transcription factor HEC2-like [Cucurbita moschata])

HSP 1 Score: 404.8 bits (1039), Expect = 4.4e-109
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP 60
           MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP
Sbjct: 1   MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPP 60

Query: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120
           HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA
Sbjct: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120

Query: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR 180
           RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR
Sbjct: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFR 180

Query: 181 FPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           FPAAMSAGGSNYKQFQFAQSGHEHVEDA
Sbjct: 181 FPAAMSAGGSNYKQFQFAQSGHEHVEDA 208

[Close]

BLAST of CmoCh05G001760 vs. NCBI nr
Match: KAG6598365.1 (Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 207/212 (97.64%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFTDFGSS----TSHRFQNPTPPILPSYALSSTASMNNATHPLAPP 60
           MDVLTQMENFSEFFEFTDFGSS    TSHRFQNPTPPILPSYALSSTASMNNATHPLAPP
Sbjct: 1   MDVLTQMENFSEFFEFTDFGSSNIGATSHRFQNPTPPILPSYALSSTASMNNATHPLAPP 60

Query: 61  CPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQ 120
           CPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQ
Sbjct: 61  CPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQ 120

Query: 121 SVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPS 180
           SVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPS
Sbjct: 121 SVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPS 180

Query: 181 SAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           SAF FPAAMSAGGSNYKQFQFAQSGHEHVEDA
Sbjct: 181 SAFGFPAAMSAGGSNYKQFQFAQSGHEHVEDA 212

[Close]

BLAST of CmoCh05G001760 vs. NCBI nr
Match: KAG7029335.1 (Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 390.6 bits (1002), Expect = 8.6e-105
Identity = 207/219 (94.52%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFTD-------FGSS----TSHRFQNPTPPILPSYALSSTASMNNA 60
           MDVLTQMENFSEFFEFT+       FGSS    TSHRFQNPTPPILPSYALSSTASMNNA
Sbjct: 1   MDVLTQMENFSEFFEFTELPSSPFSFGSSNIGATSHRFQNPTPPILPSYALSSTASMNNA 60

Query: 61  THPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120
           THPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV
Sbjct: 61  THPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120

Query: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQI 180
           KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQI
Sbjct: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQI 180

Query: 181 AANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           AANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA
Sbjct: 181 AANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 219

[Close]

BLAST of CmoCh05G001760 vs. NCBI nr
Match: XP_023546334.1 (transcription factor HEC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 3.1e-102
Identity = 205/220 (93.18%), Postives = 207/220 (94.09%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFTD-------FGSS----TSHRFQNPTPPILPSYALSSTASMNNA 60
           MDVLTQMENFSEFFEFT+       FGSS    TSHRFQNPTPPILPSYALSSTASMNNA
Sbjct: 1   MDVLTQMENFSEFFEFTELPSWPFSFGSSNIGATSHRFQNPTPPILPSYALSSTASMNNA 60

Query: 61  THPLAPPCPPPHSPAATPNSHTK-QQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRN 120
           THPLAPPCPPPHSPAATPNSHTK QQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRN
Sbjct: 61  THPLAPPCPPPHSPAATPNSHTKQQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRN 120

Query: 121 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 180
           VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ
Sbjct: 121 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 180

Query: 181 IAANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           IAANNRPSSAF FPAAMSAGGSNYKQFQFAQ+GHEHVEDA
Sbjct: 181 IAANNRPSSAFGFPAAMSAGGSNYKQFQFAQTGHEHVEDA 220

[Close]

BLAST of CmoCh05G001760 vs. NCBI nr
Match: XP_022996919.1 (transcription factor HEC2-like [Cucurbita maxima])

HSP 1 Score: 362.8 bits (930), Expect = 1.9e-96
Identity = 198/219 (90.41%), Postives = 200/219 (91.32%), Query Frame = 0


Query: 1   MDVLTQMENFSEFFEFT-------DFGSS----TSHRFQNPTPPILPSYALSSTASMNNA 60
           MDVLTQMENFSE+FEFT        FGSS    TS RFQNPT PILPSYALSSTASMNNA
Sbjct: 1   MDVLTQMENFSEYFEFTKLPASPFSFGSSNIGATSIRFQNPT-PILPSYALSSTASMNNA 60

Query: 61  THPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120
           THPLAPPC PPHS AATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV
Sbjct: 61  THPLAPPCLPPHSSAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNV 120

Query: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQI 180
           KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLK+QVQ LQI
Sbjct: 121 KISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKNQVQCLQI 180

Query: 181 AANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 209
           AANNRPSSAF FPAAMSAGGSNYKQF FAQSGHEHVEDA
Sbjct: 181 AANNRPSSAFGFPAAMSAGGSNYKQFHFAQSGHEHVEDA 218

[Close]

BLAST of CmoCh05G001760 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-41
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 68  NSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERI 127
           NS+      +M AMREMI+RIA MQPI IDPEAVKPPKRRNV+ISKDPQSVAARHRRERI
Sbjct: 85  NSNNNNNGTNMAAMREMIFRIAVMQPIHIDPEAVKPPKRRNVRISKDPQSVAARHRRERI 144

Query: 128 SERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 169
           SERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSL+
Sbjct: 145 SERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSLE 185

[Close]

BLAST of CmoCh05G001760 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 158.7 bits (400), Expect = 5.1e-39
Identity = 102/181 (56.35%), Postives = 120/181 (66.30%), Query Frame = 0


Query: 3   VLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSST-ASMNNATHPLAP--PCPP 62
           ++ QME   E F         S+   NP P  +   + S+T     N TH   P     P
Sbjct: 11  MMQQMEKLPEHF---------SNSNPNPNPHNIMMLSESNTHPFFFNPTHSHLPFDQTMP 70

Query: 63  PHSP------AATPNSHTKQQQD------SMGAMREMIYRIAAMQPIQIDPEAVKPPKRR 122
            H P      A +P+S   +++       +M AMREMI+RIA MQPI IDPE+VKPPKR+
Sbjct: 71  HHQPGLNFRYAPSPSSSLPEKRGGCSDNANMAAMREMIFRIAVMQPIHIDPESVKPPKRK 130

Query: 123 NVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 169
           NV+ISKDPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAIHYVKFLK QVQSL
Sbjct: 131 NVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 182

[Close]

BLAST of CmoCh05G001760 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-33
Identity = 78/119 (65.55%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 58  PPPHSPAATPNSHTKQQQD---------SMGAMREMIYRIAAMQPIQIDPEAVKPPKRRN 117
           PP  S   T    +  Q+D          +GAM+EM+Y+IAAMQ + IDP  VK PKRRN
Sbjct: 63  PPLSSSLTTTTLLSGDQEDDEDEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRN 122

Query: 118 VKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSL 168
           V+IS DPQSVAARHRRERISERIRILQR+VPGGTKMDTASMLDEAI YVKFLK Q++ L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLL 181

[Close]

BLAST of CmoCh05G001760 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-29
Identity = 69/111 (62.16%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 58  PPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQS 117
           PPP +         ++  + M AM+EM Y IA MQP+ IDP  V  P RRNV+IS DPQ+
Sbjct: 67  PPPET--LIHLDEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQT 126

Query: 118 VAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQ 169
           V AR RRERISE+IRIL+RIVPGG KMDTASMLDEAI Y KFLK QV+ LQ
Sbjct: 127 VVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

[Close]

BLAST of CmoCh05G001760 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 6.9e-28
Identity = 66/115 (57.39%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 61  HSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAA 120
           HS   + N   +   +++  M+EMIYR AA +P+    E V+ PKR+NVKIS DPQ+VAA
Sbjct: 227 HSTCLSDN--VEPDAEAIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAA 286

Query: 121 RHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRP 176
           R RRERISE+IR+LQ +VPGGTKMDTASMLDEA +Y+KFL++QV++L+   N RP
Sbjct: 287 RQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE---NLRP 336

The following BLAST results are available for this feature:

BLAST of CmoCh05G001760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FHA7	4.5e-40	84.16	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	7.2e-38	56.35	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q9LXD8	2.7e-32	65.55	Transcription factor HEC3 OS=Arabidopsis thaliana OX=3702 GN=HEC3 PE=1 SV=1	[more]
O81313	6.8e-28	62.16	Transcription factor IND OS=Arabidopsis thaliana OX=3702 GN=IND PE=1 SV=3	[more]
Q8S3D2	9.8e-27	57.39	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of CmoCh05G001760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HET7	2.1e-109	100.00	transcription factor HEC2-like OS=Cucurbita moschata OX=3662 GN=LOC111462825 PE=...	[more]
A0A6J1KA10	9.3e-97	90.41	transcription factor HEC2-like OS=Cucurbita maxima OX=3661 GN=LOC111492009 PE=4 ...	[more]
A0A1S3BA85	3.0e-47	56.47	transcription factor HEC3-like OS=Cucumis melo OX=3656 GN=LOC103487880 PE=4 SV=1	[more]
A0A0A0LRA8	1.7e-45	56.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357190 PE=4 S...	[more]
A0A6A4L9H7	3.7e-45	75.18	BHLH domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=26292...	[more]

BLAST of CmoCh05G001760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962355.1	4.4e-109	100.00	transcription factor HEC2-like [Cucurbita moschata]	[more]
KAG6598365.1	1.6e-106	97.64	Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029335.1	8.6e-105	94.52	Transcription factor HEC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023546334.1	3.1e-102	93.18	transcription factor HEC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996919.1	1.9e-96	90.41	transcription factor HEC2-like [Cucurbita maxima]	[more]

BLAST of CmoCh05G001760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67060.1	3.2e-41	84.16	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	5.1e-39	56.35	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	1.9e-33	65.55	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	4.8e-29	62.16	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	6.9e-28	57.39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 117..166 e-value: 2.7E-13 score: 60.1
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 121..160 e-value: 1.4E-6 score: 28.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 111..160 score: 15.148091
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 110..178 e-value: 5.2E-12 score: 47.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 115..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..75
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 25..197
None	No IPR available	PANTHER	PTHR45914:SF29	BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN	coord: 25..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G001760.1	CmoCh05G001760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity