CmoCh05G001180 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G001180
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger CCCH domain-containing protein 20-like
Location	Cmo_Chr05: 495566 .. 496486 (-)
RNA-Seq Expression	CmoCh05G001180
Synteny	CmoCh05G001180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAACGAATCAATGTTTCTCAATCCCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCATATTTCACCGCGGACAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCGTTGCTCTGGGAGGATCAAGACTTGCCGGCCATGGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCATGCCGTGACGGAGCAGGCTGCCGAAGGCGGGTCTGTTTCTTCGCCCACTCGTCGGAGCAACTCCGGATTCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCGCCGCCTCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCGGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAACCACCGGTGGGGAATCGTTCAGTAGATTAGTCGCAATGATGCACAATCTCCACTTTGATGAATTAAAAACGAATCCGGGGATCTCCGGCTTCGGTCCAAATTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGAGAACTCAGTGGAGCGTGTCCGGCCGCTGATATTGGCCGGATCTCGGAACTAA

mRNA sequence

ATGATTAACGAATCAATGTTTCTCAATCCCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCATATTTCACCGCGGACAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCGTTGCTCTGGGAGGATCAAGACTTGCCGGCCATGGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCATGCCGTGACGGAGCAGGCTGCCGAAGGCGGGTCTGTTTCTTCGCCCACTCGTCGGAGCAACTCCGGATTCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCGCCGCCTCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCGGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAACCACCGGTGGGGAATCGTTCAGTAGATTAGTCGCAATGATGCACAATCTCCACTTTGATGAATTAAAAACGAATCCGGGGATCTCCGGCTTCGGTCCAAATTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGAGAACTCAGTGGAGCGTGTCCGGCCGCTGATATTGGCCGGATCTCGGAACTAA

Coding sequence (CDS)

ATGATTAACGAATCAATGTTTCTCAATCCCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCATATTTCACCGCGGACAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCGTTGCTCTGGGAGGATCAAGACTTGCCGGCCATGGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCATGCCGTGACGGAGCAGGCTGCCGAAGGCGGGTCTGTTTCTTCGCCCACTCGTCGGAGCAACTCCGGATTCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCGCCGCCTCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCGGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAACCACCGGTGGGGAATCGTTCAGTAGATTAGTCGCAATGATGCACAATCTCCACTTTGATGAATTAAAAACGAATCCGGGGATCTCCGGCTTCGGTCCAAATTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGAGAACTCAGTGGAGCGTGTCCGGCCGCTGATATTGGCCGGATCTCGGAACTAA

Protein sequence

MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLILAGSRN

Homology

[Close]

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot
Match: O82199 (Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=At2g19810 PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.5e-73
Identity = 159/343 (46.36%), Postives = 197/343 (57.43%), Query Frame = 0


Query: 1   MINES-MFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDY--------DS 60
           MI ES    NPT HI  W  L +       Y + D  S +    A +  Y        DS
Sbjct: 2   MIGESHRGFNPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDS 61

Query: 61  LLWEDQDL---PAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRK 120
               D DL    + +DA+TCDHFRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRK
Sbjct: 62  ----DPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRK 121

Query: 121 FNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSS 180
           F+YSGT CP+ R GCC +GDACE++HGVFE WLHP RYRTQPC+DG  CRRRVCFFAHS 
Sbjct: 122 FHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSP 181

Query: 181 EQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSR---- 240
           +Q+R+   QS       ++ +  +       IS SS+SPP+SP     +     SR    
Sbjct: 182 DQIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGS 241

Query: 241 -----LVAMMHNLHFDELKT------NPGISGF------------GPNFR------RNSG 299
                +VA + NL  +++K+      N  I G+            GP FR         G
Sbjct: 242 NLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPG 301

[Close]

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.7e-67
Identity = 147/317 (46.37%), Postives = 194/317 (61.20%), Query Frame = 0


Query: 9   NPTPHISSWDSLDDPAAAIPSYFTADNVSPLD----SPTAAVMDYDSL--------LWED 68
           +PT HI  WD ++DP A I S F++ N++ ++    SP+  +  + SL        L  D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  QDLPA------MVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFN 128
            D  +      + D+F+ D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C +GD+CE++HGVFE WLHP RYRTQPC+DG  CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSIRSPRGREIAASAVSSPTSILISSS----SDSPPMSPIS----------PLT 248
           LR+    S+    G    +   +SPTSIL+S S    S+SPP+SP +           L 
Sbjct: 191 LRVL-PCSLDPDLG--FFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLN 250

Query: 249 TGGESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESG 294
            GG S+S  +     L F      P  +   P  R         + + EE PAME VESG
Sbjct: 251 GGGCSWSSPMRSAVRLPFSS-SLRPIQAATWPRIR---------EFEIEEAPAMEFVESG 310

[Close]

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot
Match: Q9M0G2 (Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN=At4g29190 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 3.2e-66
Identity = 150/344 (43.60%), Postives = 194/344 (56.40%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSP-LDSPTAAVMD----------- 60
           MI E+    PT  I  W  L++         T++  SP ++SP  ++++           
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEE-------LTTSEFFSPVMNSPDCSMLEALAGLQRYLPS 61

Query: 61  -------YDSLLWEDQDLPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKA 120
                  Y  LL  D    + +DA++CDHFRMY+FKVR CARGRSHDWT+CPYAH GEKA
Sbjct: 62  NEPDPESYPDLLGPD----SPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKA 121

Query: 121 RRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRV 180
           RRRDPRK++YSGT CPD R G C KGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++
Sbjct: 122 RRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKI 181

Query: 181 CFFAHSSEQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSP-----ISPLT 240
           CFFAHS +QLR    +S       ++++   +    + IS  S SPPMSP      SP+T
Sbjct: 182 CFFAHSPDQLRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMT 241

Query: 241 ------TGGESFSRLVAMMHNLHFDELKT---NPGISGFG--------------PNFRRN 297
                  G  S + +V    NL F+ +K+   N  + GFG              P     
Sbjct: 242 QSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTR 301

[Close]

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 3.0e-56
Identity = 132/302 (43.71%), Postives = 173/302 (57.28%), Query Frame = 0


Query: 59  LPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPD 118
           + A VDA+ CD FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPRK++YSGT CPD
Sbjct: 65  MAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYHYSGTACPD 124

Query: 119 LRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRI-PGKQ 178
            R G C +GDACEYAHGVFE WLHP RYRTQPC+DG  CRRRVCFFAH+ +QLR+ P +Q
Sbjct: 125 FRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQ 184

Query: 179 SI--------------RSPRGREIAASAV------SSPTSILI----SSSSDSPPMSP-- 238
           S                SP  R+   S +      SSPTS L+    S  S+SPP+SP  
Sbjct: 185 SSPRSVASSPLAESYDGSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDG 244

Query: 239 ISPLTTG-----GESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDS------- 294
            + +  G     G   + ++A    L  +++K++P  SG G ++  +S  + S       
Sbjct: 245 AAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSP--SG-GWSYPSSSAVYGSPKAATGL 304

[Close]

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.1e-54
Identity = 135/322 (41.93%), Postives = 166/322 (51.55%), Query Frame = 0


Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A VDA+ CD FRMYEFKVR CARGRSHDWT+CP+AH GEKARRRDPR++ YSGT CPD R
Sbjct: 68  AAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYCYSGTACPDFR 127

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRI---PGKQ 180
            G C +GDACE+AHGVFE WLHP RYRTQPC+DG  CRRRVCFFAH+ +QLR+     +Q
Sbjct: 128 KGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPPSQQQ 187

Query: 181 SIRSPR-----GREIAASAV------------------------SSPTSILI----SSSS 240
              SPR     G   AAS +                        SSPTS L+    S  S
Sbjct: 188 GSNSPRGCGGGGAGAAASPLAESYDGSPLRRQAFESYLTKSIMSSSPTSTLVSPPRSPPS 247

Query: 241 DSPPMSP--ISPLTTG-----GESFSRLVAMMHNLHFDELKTNPGISGFGP--------- 300
           +SPP+SP     L  G     G   + +   +  L     ++ P  + F P         
Sbjct: 248 ESPPLSPDAAGALRRGAWAGVGSPVNDVHVSLRQLRLGSPRSAPSCASFLPAGYQYGSPK 307

Query: 301 -----------------------NFRRNSGAFDSWDRDN----EEEPAMERVESGRNLRA 304
                                       SGA  + +  +    EEE  MERVESGR LR 
Sbjct: 308 SPAAAAAAALYSLPSTPTRLSPVTVTTASGATVTVEPLDLGLIEEEQPMERVESGRALRE 367

[Close]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL
Match: A0A6J1HCT8 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111462347 PE=4 SV=1)

HSP 1 Score: 636.7 bits (1641), Expect = 4.9e-179
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN
Sbjct: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI
Sbjct: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL
Match: A0A6J1K790 (zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111492294 PE=4 SV=1)

HSP 1 Score: 617.1 bits (1590), Expect = 4.0e-173
Identity = 296/306 (96.73%), Postives = 300/306 (98.04%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTA NVSPLDSPTAAVMDYDS  WEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A+VDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGA CRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAA AVSSPTSILISSSSDSPPMSPISPL TGGESFSRLVA+MHNLHFDELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGP+FRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMR+NSVERVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL
Match: A0A5A7V5C0 (Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001160 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 7.9e-153
Identity = 259/306 (84.64%), Postives = 279/306 (91.18%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MI ESM LNPT HIS+WDSLDDP+AAI SYF+A +VSPLDSPTAA+MD+DS LWED DLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A VD F+CD FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCC KGDACEYAHG FEIWLHPDRYRTQPCRDG GCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPR REIA  AVSSPTSIL+S SSDSPP+SPISP+ +GGESFSRLVA+MH+L  DELKTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PG+S F PN RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMRENSV+RVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 LAGSRN 307
            AGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL
Match: A0A1S3BBA7 (LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103487803 PE=4 SV=1)

HSP 1 Score: 544.7 bits (1402), Expect = 2.5e-151
Identity = 257/306 (83.99%), Postives = 277/306 (90.52%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MI ESM LNPT HIS+WDSLDDP+AAI SYF+A +VSPLDSPTAA+MD+DS LWED DLP
Sbjct: 1   MIAESMLLNPTAHISTWDSLDDPSAAISSYFSAGHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A VD F+CD FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDGFSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCC KGDACEYAHG FEIWLHPDRYRTQPCRDG GCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPR REIA  AVSSPTSIL+S SSDSPP+SPISP+ +GGES SRLVA+MH+L  DE KTN
Sbjct: 181 SPRAREIAVPAVSSPTSILLSPSSDSPPLSPISPVISGGESSSRLVALMHSLRLDEXKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PG+S F PN RRNSGAFD WDR+NEEEPAMERVESGRNLRAQMYAKLMRENSV+RVRPLI
Sbjct: 241 PGVSSFSPNLRRNSGAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPLI 300

Query: 301 LAGSRN 307
            AGS+N
Sbjct: 301 SAGSQN 306

[Close]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL
Match: A0A0A0LNN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.0e-149
Identity = 254/307 (82.74%), Postives = 277/307 (90.23%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MI ESM LNPT HIS+WDSLDDP+ AI SYF+  +VSPLDSPTAA+MD+DS LWED DLP
Sbjct: 1   MIAESMLLNPTSHISTWDSLDDPSPAISSYFSTAHVSPLDSPTAALMDFDSSLWEDPDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A VDA++CD FRMYEFKVR+CARGRSHDWTKCPYAH GEKARRRDPRKFNYSG ECPDLR
Sbjct: 61  APVDAYSCDQFRMYEFKVRSCARGRSHDWTKCPYAHTGEKARRRDPRKFNYSGAECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCC KGDACEYAHG FEIWLHPDRYRTQPCRDG GCRRRVCFFAH+SEQLRIPGKQS+R
Sbjct: 121 HGCCKKGDACEYAHGTFEIWLHPDRYRTQPCRDGTGCRRRVCFFAHTSEQLRIPGKQSVR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPR RE+A  AVSSPTSIL+S SSDSPP+SPISP+ +GGESFSRLVA+MH+L  DELKTN
Sbjct: 181 SPRAREMAIPAVSSPTSILLSPSSDSPPLSPISPVISGGESFSRLVALMHSLRLDELKTN 240

Query: 241 PGISGFGPNFRRNSG-AFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPL 300
           PG+S F PN RR+SG AFD WDR+NEEEPAMERVESGRNLRAQMYAKLMRENSV+RVRP+
Sbjct: 241 PGVSSFSPNLRRSSGAAFDLWDRENEEEPAMERVESGRNLRAQMYAKLMRENSVDRVRPM 300

Query: 301 ILAGSRN 307
           I AGS N
Sbjct: 301 ISAGSLN 307

[Close]

BLAST of CmoCh05G001180 vs. NCBI nr
Match: XP_022961630.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata])

HSP 1 Score: 636.7 bits (1641), Expect = 1.0e-178
Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN
Sbjct: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI
Sbjct: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. NCBI nr
Match: KAG7029281.1 (Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 628.2 bits (1619), Expect = 3.6e-176
Identity = 302/306 (98.69%), Postives = 303/306 (99.02%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTA NVSPLDSPTAAVMDYDS LWEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKF YSGTECPDLR
Sbjct: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFKYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVA+MHNLHFDELKTN
Sbjct: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI
Sbjct: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. NCBI nr
Match: KAG6598310.1 (Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 627.1 bits (1616), Expect = 8.0e-176
Identity = 301/306 (98.37%), Postives = 303/306 (99.02%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTA NVSPLDSPTAAVMDYDS LWEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKF YSGTECPDLR
Sbjct: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFKYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDAC+YAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACDYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVA+MHNLHFDELKTN
Sbjct: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI
Sbjct: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. NCBI nr
Match: XP_023545606.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 623.6 bits (1607), Expect = 8.9e-175
Identity = 300/306 (98.04%), Postives = 302/306 (98.69%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLN TPHISSWDSLDDPAAAIPSYFTA NVSPLDSPTAAVMDYDS LWEDQDLP
Sbjct: 1   MINESMFLNLTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSLWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A+VDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREI ASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVA+MHNLHFDELKTN
Sbjct: 181 SPRGREITASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI
Sbjct: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. NCBI nr
Match: XP_022997351.1 (zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 617.1 bits (1590), Expect = 8.3e-173
Identity = 296/306 (96.73%), Postives = 300/306 (98.04%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLP 60
           MINESMFLNPTPHISSWDSLDDPAAAIPSYFTA NVSPLDSPTAAVMDYDS  WEDQDLP
Sbjct: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTAGNVSPLDSPTAAVMDYDSSFWEDQDLP 60

Query: 61  AMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120
           A+VDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR
Sbjct: 61  AIVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLR 120

Query: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIR 180
           HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGA CRRRVCFFAHSSEQLRIPGKQSIR
Sbjct: 121 HGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAVCRRRVCFFAHSSEQLRIPGKQSIR 180

Query: 181 SPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTN 240
           SPRGREIAA AVSSPTSILISSSSDSPPMSPISPL TGGESFSRLVA+MHNLHFDELKTN
Sbjct: 181 SPRGREIAAPAVSSPTSILISSSSDSPPMSPISPLATGGESFSRLVALMHNLHFDELKTN 240

Query: 241 PGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLI 300
           PGISGFGP+FRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMR+NSVERVRPLI
Sbjct: 241 PGISGFGPSFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRDNSVERVRPLI 300

Query: 301 LAGSRN 307
           LAGSRN
Sbjct: 301 LAGSRN 306

[Close]

BLAST of CmoCh05G001180 vs. TAIR 10
Match: AT2G19810.1 (CCCH-type zinc finger family protein )

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-74
Identity = 159/343 (46.36%), Postives = 197/343 (57.43%), Query Frame = 0


Query: 1   MINES-MFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDY--------DS 60
           MI ES    NPT HI  W  L +       Y + D  S +    A +  Y        DS
Sbjct: 2   MIGESHRGFNPTVHIPPW-PLSEDLTVSDIYGSPDGGSSMMEALAELQRYLPSNEPDPDS 61

Query: 61  LLWEDQDL---PAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRK 120
               D DL    + +DA+TCDHFRMYEFKVR CARGRSHDWT+CPYAH GEKARRRDPRK
Sbjct: 62  ----DPDLSGPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRK 121

Query: 121 FNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSS 180
           F+YSGT CP+ R GCC +GDACE++HGVFE WLHP RYRTQPC+DG  CRRRVCFFAHS 
Sbjct: 122 FHYSGTACPEFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSP 181

Query: 181 EQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSR---- 240
           +Q+R+   QS       ++ +  +       IS SS+SPP+SP     +     SR    
Sbjct: 182 DQIRVLPNQSPDRVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGS 241

Query: 241 -----LVAMMHNLHFDELKT------NPGISGF------------GPNFR------RNSG 299
                +VA + NL  +++K+      N  I G+            GP FR         G
Sbjct: 242 NLGNDVVASLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTRPG 301

[Close]

BLAST of CmoCh05G001180 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.7e-68
Identity = 147/317 (46.37%), Postives = 194/317 (61.20%), Query Frame = 0


Query: 9   NPTPHISSWDSLDDPAAAIPSYFTADNVSPLD----SPTAAVMDYDSL--------LWED 68
           +PT HI  WD ++DP A I S F++ N++ ++    SP+  +  + SL        L  D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  QDLPA------MVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFN 128
            D  +      + D+F+ D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C +GD+CE++HGVFE WLHP RYRTQPC+DG  CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSIRSPRGREIAASAVSSPTSILISSS----SDSPPMSPIS----------PLT 248
           LR+    S+    G    +   +SPTSIL+S S    S+SPP+SP +           L 
Sbjct: 191 LRVL-PCSLDPDLG--FFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLN 250

Query: 249 TGGESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESG 294
            GG S+S  +     L F      P  +   P  R         + + EE PAME VESG
Sbjct: 251 GGGCSWSSPMRSAVRLPFSS-SLRPIQAATWPRIR---------EFEIEEAPAMEFVESG 310

[Close]

BLAST of CmoCh05G001180 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 256.5 bits (654), Expect = 2.7e-68
Identity = 147/317 (46.37%), Postives = 194/317 (61.20%), Query Frame = 0


Query: 9   NPTPHISSWDSLDDPAAAIPSYFTADNVSPLD----SPTAAVMDYDSL--------LWED 68
           +PT HI  WD ++DP A I S F++ N++ ++    SP+  +  + SL        L  D
Sbjct: 11  HPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELTND 70

Query: 69  QDLPA------MVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFN 128
            D  +      + D+F+ D FR+YEFK+R CARGRSHDWT+CP+AH GEKARRRDPRKF+
Sbjct: 71  SDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFH 130

Query: 129 YSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQ 188
           YSGT CP+ R G C +GD+CE++HGVFE WLHP RYRTQPC+DG  CRRR+CFFAH++EQ
Sbjct: 131 YSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQ 190

Query: 189 LRIPGKQSIRSPRGREIAASAVSSPTSILISSS----SDSPPMSPIS----------PLT 248
           LR+    S+    G    +   +SPTSIL+S S    S+SPP+SP +           L 
Sbjct: 191 LRVL-PCSLDPDLG--FFSGLATSPTSILVSPSFSPPSESPPLSPSTGELIASMRKMQLN 250

Query: 249 TGGESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESG 294
            GG S+S  +     L F      P  +   P  R         + + EE PAME VESG
Sbjct: 251 GGGCSWSSPMRSAVRLPFSS-SLRPIQAATWPRIR---------EFEIEEAPAMEFVESG 310

[Close]

BLAST of CmoCh05G001180 vs. TAIR 10
Match: AT4G29190.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-67
Identity = 150/344 (43.60%), Postives = 194/344 (56.40%), Query Frame = 0


Query: 1   MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSP-LDSPTAAVMD----------- 60
           MI E+    PT  I  W  L++         T++  SP ++SP  ++++           
Sbjct: 2   MIGETRRTYPTVEIPPWPVLEE-------LTTSEFFSPVMNSPDCSMLEALAGLQRYLPS 61

Query: 61  -------YDSLLWEDQDLPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKA 120
                  Y  LL  D    + +DA++CDHFRMY+FKVR CARGRSHDWT+CPYAH GEKA
Sbjct: 62  NEPDPESYPDLLGPD----SPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKA 121

Query: 121 RRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRV 180
           RRRDPRK++YSGT CPD R G C KGD+CE+AHGVFE WLHP RYRTQPC+DG  C R++
Sbjct: 122 RRRDPRKYHYSGTACPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKI 181

Query: 181 CFFAHSSEQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSP-----ISPLT 240
           CFFAHS +QLR    +S       ++++   +    + IS  S SPPMSP      SP+T
Sbjct: 182 CFFAHSPDQLRFLHTRSPDRVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMT 241

Query: 241 ------TGGESFSRLVAMMHNLHFDELKT---NPGISGFG--------------PNFRRN 297
                  G  S + +V    NL F+ +K+   N  + GFG              P     
Sbjct: 242 QSLSRSLGSCSINDVVPSFRNLQFNSVKSFPRNNPLFGFGSPRGSILGPGFQSLPTTPTR 301

[Close]

BLAST of CmoCh05G001180 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 185.7 bits (470), Expect = 5.8e-47
Identity = 95/177 (53.67%), Postives = 113/177 (63.84%), Query Frame = 0


Query: 64  DAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRH-G 123
           D +  DHFRM+EFK+R C R RSHDWT CP+AH GEKARRRDPR+F YSG  CP+ R  G
Sbjct: 76  DPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFRRGG 135

Query: 124 CCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLR------IPGK 183
            C +GD CE+AHGVFE WLHP RYRT+ C+DG  C+R+VCFFAHS  QLR      + G 
Sbjct: 136 DCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLPPENVSGV 195

Query: 184 QSIRSPRGRE-IAASAVSSPTSILIS-------SSSDSPPMSPISPLTTGGESFSRL 226
            +  SP  +        SSPTS L+        S S SPPMSP +       +FSRL
Sbjct: 196 SASPSPAAKNPCCLFCSSSPTSTLLGNLSHLSRSPSLSPPMSPANK----AAAFSRL 248

The following BLAST results are available for this feature:

BLAST of CmoCh05G001180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82199	3.5e-73	46.36	Zinc finger CCCH domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN...	[more]
O82307	3.7e-67	46.37	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M0G2	3.2e-66	43.60	Zinc finger CCCH domain-containing protein 49 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	3.0e-56	43.71	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	2.1e-54	41.93	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]

BLAST of CmoCh05G001180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HCT8	4.9e-179	100.00	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1K790	4.0e-173	96.73	zinc finger CCCH domain-containing protein 20-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7V5C0	7.9e-153	84.64	Zinc finger CCCH domain-containing protein 20 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BBA7	2.5e-151	83.99	LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 20 OS=Cucumis me...	[more]
A0A0A0LNN8	9.0e-149	82.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G352420 PE=4 SV=1	[more]

BLAST of CmoCh05G001180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961630.1	1.0e-178	100.00	zinc finger CCCH domain-containing protein 20-like [Cucurbita moschata]	[more]
KAG7029281.1	3.6e-176	98.69	Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma s...	[more]
KAG6598310.1	8.0e-176	98.37	Zinc finger CCCH domain-containing protein 49, partial [Cucurbita argyrosperma s...	[more]
XP_023545606.1	8.9e-175	98.04	zinc finger CCCH domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997351.1	8.3e-173	96.73	zinc finger CCCH domain-containing protein 20-like [Cucurbita maxima]	[more]

BLAST of CmoCh05G001180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19810.1	2.5e-74	46.36	CCCH-type zinc finger family protein	[more]
AT2G25900.1	2.7e-68	46.37	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	2.7e-68	46.37	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT4G29190.1	2.2e-67	43.60	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	5.8e-47	53.67	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 110..136 e-value: 0.057 score: 22.5 coord: 145..168 e-value: 26.0 score: 4.9
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 110..137 score: 11.262791
None	No IPR available	GENE3D	4.10.1000.10		coord: 107..178 e-value: 1.0E-6 score: 30.5
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 251..299 coord: 9..242
None	No IPR available	PANTHER	PTHR14493:SF116	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20	coord: 251..299 coord: 9..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G001180.1	CmoCh05G001180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0061157	mRNA destabilization
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003727	single-stranded RNA binding