CmoCh05G000650 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh05G000650
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionFormin-like protein
LocationCmo_Chr05: 239007 .. 239609 (-)
RNA-Seq ExpressionCmoCh05G000650
SyntenyCmoCh05G000650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA

mRNA sequence

ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA

Coding sequence (CDS)

ATGTTGTACAGCACCCAAAGAATGGCGGGAGCTACGACAAACAGCAGAAGCTGGCCCCTGCTATCACTTGAAGATGCATCCGCAATCATGGCGAGCTCACTGGCAGAGGCATCAGGTGCGTACATGAACCCTGATGCAGTCAACCCCCCTAATCCCAACCCAATTATCACACCCTTGTCACTGCGCATTCTGTTTATCTGGTTGAGTGCTGGCTGTAATATGTTGAACAGAACCCATGCTATGGCCGGGATAAGAGGTAGCAAAAGGGCTATACCACGGTTGTCACCGTCGGCTGCTATATCTGCAATTTGTTGGGCTGCGAAGGCAGGATCTGATGAGCTCAGGGCTGAGAAGACAGCTCCGGCGATGGCGGTGGTGGAGAGAAAGGCTGATAAGTTGGAATGTTCATTGGATTTTGATGAGATTAGTCCTTTCGGCAGGTTCTGGAGAGAGAGAAGGGAGATGGGCTTGGGGATCAGCTTTGGGGTGTTGTGGTTTCTGGTGGAGTTGATGCTTGTGCACTTGACACTCAGCACTGCCATTGTTGCCATGGTAGCTGCCATTGAAGTTGATTTGCTTGTTTCTGCTGAACTTTGCTCTTGA

Protein sequence

MLYSTQRMAGATTNSRSWPLLSLEDASAIMASSLAEASGAYMNPDAVNPPNPNPIITPLSLRILFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAVVERKADKLECSLDFDEISPFGRFWRERREMGLGISFGVLWFLVELMLVHLTLSTAIVAMVAAIEVDLLVSAELCS
Homology
BLAST of CmoCh05G000650 vs. ExPASy TrEMBL
Match: A0A151U8Y3 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019931 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 99/190 (52.11%), Postives = 111/190 (58.42%), Query Frame = 0

Query: 8   MAGATTNSRSWPLLSL---EDASAIMASSLAEASGAYMNPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RS P LSL     ASAI   S AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAM 127
              WLSAGC ML RTHAMAGI GS  A PRLSPS AI AIC AAKA S   R +  APA 
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPS-AIWAICCAAKAASQLPRVQNVAPAS 120

Query: 128 AVVERKADKLECSLDFDEISPFGRFWRERR---EMGLGISFGVLWFLVELMLVHLTLSTA 187
           AVV             D   PFGR W ++R   E     S G+LW LV        ++ A
Sbjct: 121 AVV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIA 176

Query: 188 IVAMVAAIEV 191
           +VAMVAAI V
Sbjct: 181 VVAMVAAIVV 176

BLAST of CmoCh05G000650 vs. ExPASy TrEMBL
Match: A0A5J5AGF1 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_034220 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 98/186 (52.69%), Postives = 109/186 (58.60%), Query Frame = 0

Query: 8   MAGATTNSRSWPLLSLEDASAIMASSLAEASGAYMNPDAVNPPNPNPIITPLSLRILFIW 67
           MAG  TNSRS PLLS   ASA +A SLAEA G  MNP A  PP+P+P++ PL LRI  IW
Sbjct: 1   MAGLITNSRSCPLLSAA-ASATIAISLAEACGVDMNPGAAKPPSPSPMMIPL-LRIRLIW 60

Query: 68  LSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAVVE 127
           L AG  ML  T AMAGI G+KRA PRLSPS AISAIC AAKAGS EL+ EK APAMAV  
Sbjct: 61  LRAGWRMLKSTQAMAGIMGNKRARPRLSPS-AISAICCAAKAGSQELKVEKMAPAMAVPA 120

Query: 128 RKADKLECSLDFDEISPFGRFWRERREMGLGISFGVLWFLVELMLVHLTLSTAIVAMVAA 187
            +                             +S G          VHL LS AIVAMVAA
Sbjct: 121 SEV----------------------------VSDG--------FEVHLALSIAIVAMVAA 147

Query: 188 IEVDLL 194
           I+V L+
Sbjct: 181 IDVALV 147

BLAST of CmoCh05G000650 vs. ExPASy TrEMBL
Match: A0A151TKL7 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_023933 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.5e-14
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 58  PLSLRILFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAE 117
           PL LR+ F W  AGC ML  THAMAGI GS  A PRLS  +A++AICWAAKA S   RAE
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVVERKADKLECSLDFDEISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLT 177
           KTAPA+AV               E+  FG      R +G  G+S G+   L  L+L H  
Sbjct: 63  KTAPAIAV---------------EVDSFG----SGRVVGFDGMSLGLGLGLGSLVLRHFA 116

Query: 178 LSTAIVAMVAAIE 190
           L  A+  +VAAI+
Sbjct: 123 LIVAMADIVAAID 116

BLAST of CmoCh05G000650 vs. ExPASy TrEMBL
Match: A0A2U1KWH4 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA556770 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 81  MAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAVVERKADKLECSLDFD 140
           MAG +G+K AIPRLSPS AISAICWAAKAGS EL+ E  APA+AV  +    L C+   +
Sbjct: 1   MAGTKGNKSAIPRLSPS-AISAICWAAKAGSHELKVENIAPAIAVPVKVI--LACA---E 60

Query: 141 EISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLTLSTAIVA-MVAAIEV 191
            +S  G  WR RREMGL G  F  L     L ++HL LS AIV   VAAI +
Sbjct: 61  VVSDLGSVWRVRREMGLFGSGFDGL-----LDVMHLALSMAIVVDSVAAIVI 101

BLAST of CmoCh05G000650 vs. ExPASy TrEMBL
Match: A0A5N6MXV6 (Formin-like protein OS=Mikania micrantha OX=192012 GN=E3N88_27497 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.5e-06
Identity = 37/52 (71.15%), Postives = 41/52 (78.85%), Query Frame = 0

Query: 74  MLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAV 126
           ML  THA AG  G+K AIPRLSPS A++AIC AAKAGS EL+ EK APAMAV
Sbjct: 1   MLYSTHATAGTIGNKSAIPRLSPS-AMTAICCAAKAGSAELKVEKIAPAMAV 51

BLAST of CmoCh05G000650 vs. NCBI nr
Match: KYP75732.1 (hypothetical protein KK1_019931, partial [Cajanus cajan])

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-28
Identity = 99/190 (52.11%), Postives = 111/190 (58.42%), Query Frame = 0

Query: 8   MAGATTNSRSWPLLSL---EDASAIMASSLAEASGAYMNPDAVNP-PNPNPIITPLSLRI 67
           +AGATTN RS P LSL     ASAI   S AEASG    P+A  P P+P+PI TPL LR+
Sbjct: 1   IAGATTNRRSCPRLSLAAAAAASAIKPISPAEASGPDTRPEAPRPSPSPSPITTPLVLRM 60

Query: 68  LFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAM 127
              WLSAGC ML RTHAMAGI GS  A PRLSPS AI AIC AAKA S   R +  APA 
Sbjct: 61  RLSWLSAGCRMLKRTHAMAGIIGSSSARPRLSPS-AIWAICCAAKAASQLPRVQNVAPAS 120

Query: 128 AVVERKADKLECSLDFDEISPFGRFWRERR---EMGLGISFGVLWFLVELMLVHLTLSTA 187
           AVV             D   PFGR W ++R   E     S G+LW LV        ++ A
Sbjct: 121 AVV-------------DTWRPFGRLWGDKRVGFEGTASASLGLLWSLVGFRHFEFMMAIA 176

Query: 188 IVAMVAAIEV 191
           +VAMVAAI V
Sbjct: 181 VVAMVAAIVV 176

BLAST of CmoCh05G000650 vs. NCBI nr
Match: KAA8529680.1 (hypothetical protein F0562_034220 [Nyssa sinensis])

HSP 1 Score: 129.8 bits (325), Expect = 2.6e-26
Identity = 98/186 (52.69%), Postives = 109/186 (58.60%), Query Frame = 0

Query: 8   MAGATTNSRSWPLLSLEDASAIMASSLAEASGAYMNPDAVNPPNPNPIITPLSLRILFIW 67
           MAG  TNSRS PLLS   ASA +A SLAEA G  MNP A  PP+P+P++ PL LRI  IW
Sbjct: 1   MAGLITNSRSCPLLSAA-ASATIAISLAEACGVDMNPGAAKPPSPSPMMIPL-LRIRLIW 60

Query: 68  LSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAVVE 127
           L AG  ML  T AMAGI G+KRA PRLSPS AISAIC AAKAGS EL+ EK APAMAV  
Sbjct: 61  LRAGWRMLKSTQAMAGIMGNKRARPRLSPS-AISAICCAAKAGSQELKVEKMAPAMAVPA 120

Query: 128 RKADKLECSLDFDEISPFGRFWRERREMGLGISFGVLWFLVELMLVHLTLSTAIVAMVAA 187
            +                             +S G          VHL LS AIVAMVAA
Sbjct: 121 SEV----------------------------VSDG--------FEVHLALSIAIVAMVAA 147

Query: 188 IEVDLL 194
           I+V L+
Sbjct: 181 IDVALV 147

BLAST of CmoCh05G000650 vs. NCBI nr
Match: KYP67588.1 (hypothetical protein KK1_023933 [Cajanus cajan])

HSP 1 Score: 89.0 bits (219), Expect = 5.1e-14
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 0

Query: 58  PLSLRILFIWLSAGCNMLNRTHAMAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAE 117
           PL LR+ F W  AGC ML  THAMAGI GS  A PRLS  +A++AICWAAKA S   RAE
Sbjct: 3   PLLLRMPFSWFRAGCRMLKSTHAMAGIMGSSSASPRLSSPSAMAAICWAAKAPSQLPRAE 62

Query: 118 KTAPAMAVVERKADKLECSLDFDEISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLT 177
           KTAPA+AV               E+  FG      R +G  G+S G+   L  L+L H  
Sbjct: 63  KTAPAIAV---------------EVDSFG----SGRVVGFDGMSLGLGLGLGSLVLRHFA 116

Query: 178 LSTAIVAMVAAIE 190
           L  A+  +VAAI+
Sbjct: 123 LIVAMADIVAAID 116

BLAST of CmoCh05G000650 vs. NCBI nr
Match: PWA41070.1 (hypothetical protein CTI12_AA556770 [Artemisia annua])

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-11
Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 0

Query: 81  MAGIRGSKRAIPRLSPSAAISAICWAAKAGSDELRAEKTAPAMAVVERKADKLECSLDFD 140
           MAG +G+K AIPRLSPS AISAICWAAKAGS EL+ E  APA+AV  +    L C+   +
Sbjct: 1   MAGTKGNKSAIPRLSPS-AISAICWAAKAGSHELKVENIAPAIAVPVKVI--LACA---E 60

Query: 141 EISPFGRFWRERREMGL-GISFGVLWFLVELMLVHLTLSTAIVA-MVAAIEV 191
            +S  G  WR RREMGL G  F  L     L ++HL LS AIV   VAAI +
Sbjct: 61  VVSDLGSVWRVRREMGLFGSGFDGL-----LDVMHLALSMAIVVDSVAAIVI 101

BLAST of CmoCh05G000650 vs. NCBI nr
Match: KAF3526374.1 (hypothetical protein F2Q69_00050753 [Brassica cretica])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-06
Identity = 45/95 (47.37%), Postives = 53/95 (55.79%), Query Frame = 0

Query: 74  MLNRTHAMAGIRGSKRAIPRLS--PSAAISAICWAAKAGSDELRAEKTAPAMAVVERKAD 133
           ML  TH +AG  G  RA PRLS  P+AA SAI WAAKAGS++LR EKTAPA AV+     
Sbjct: 1   MLKSTHPIAGTIGRSRASPRLSLPPAAASSAIWWAAKAGSEQLRVEKTAPARAVL----- 60

Query: 134 KLECSLDFDEISPFGRFWRERREMGLGISFGVLWF 167
                +   E   FG   R  +  G     G+LWF
Sbjct: 61  -----VTARETVGFGGVGRVMK--GFDEEMGLLWF 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A151U8Y31.8e-2852.11Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_019931 PE=4 S... [more]
A0A5J5AGF11.3e-2652.69Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_034220 PE=4 SV=1[more]
A0A151TKL72.5e-1447.37Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_023933 PE=4 SV=1[more]
A0A2U1KWH41.5e-1154.46Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA556770 PE=4 SV=1[more]
A0A5N6MXV61.5e-0671.15Formin-like protein OS=Mikania micrantha OX=192012 GN=E3N88_27497 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
KYP75732.13.7e-2852.11hypothetical protein KK1_019931, partial [Cajanus cajan][more]
KAA8529680.12.6e-2652.69hypothetical protein F0562_034220 [Nyssa sinensis][more]
KYP67588.15.1e-1447.37hypothetical protein KK1_023933 [Cajanus cajan][more]
PWA41070.13.1e-1154.46hypothetical protein CTI12_AA556770 [Artemisia annua][more]
KAF3526374.11.8e-0647.37hypothetical protein F2Q69_00050753 [Brassica cretica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh05G000650.1CmoCh05G000650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane