CmoCh05G000640 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G000640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	photosystem II core complex proteins psbY, chloroplastic
Location	Cmo_Chr05: 237997 .. 239655 (+)
RNA-Seq Expression	CmoCh05G000640
Synteny	CmoCh05G000640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGATGGAGGATTTCAGAGATGAAAGCCGAAGATTTTCCACTGGGGTTCATAAAAATTGTTGTTTTTGTTGCTTCTTTGGTAAAAACTTGAGTGAATATCGAAATCAGTGTTCGTTTTGGGCAAGTTTTTGAATGCTCGGAGGCAACCGAAAGGGTGCTGGGATTACGAAAACGTGGACGGCTGCCACAAAGTTGGACAGTTTAGGACGGTGGAGTGCTTGGACGCAGAATCCATTCACCGCCGTTGGATCAACAGCCAAGCTTGCCATGGGAAATTAAATTGATGAACAGCAATGAAACCATGTTCGTGCTTGCTCGGAAAATTTTCTAGCATGGATTTACATTATTTTCATATAAACTTGGACAATCCATTCCTTCTCTTCACGTTTACAATGCCTGATAAAAAATATTTCGAACACAATCGTTGTGGTTACTCTTTCAGCGAAGAACATAGATTGCTTGGGAAGATGCATGTTTTTTTTTATTATAAATTATCATTTGGCCTTGACATACCATCATATTTATTTAAGTTTGATTTCATTTCATAGCTTTTAATGGATGAATATTAATAATTTATTAAAGAACGGGAGCAATCAAAACTCACTCATGGATTACACTGATTATACATATGTTGAAAAATTTAAGCGTTCGTTCATTCAAAGATCAGACATCAAAATCTCAATCCATGCTTTTCTTTTCGTAGACTTAATATGTTAGGGATGAAAATGATTTATTTTGAATCATTTAAAAAATAGAGAAGGAAAAGCAAGTTATTGAAGTGATAAGAGAAGTAAAGTGGGGTAGGAAATAAGAGATCTCTGACTCACAGTCCCACCCATTGGATAAGAGAGAATCCACTCCGAACAATTTTATTGGTTGGAATTACCATGACTTGGCTTCTCCTCTGTCTTCCCATCTCCTCATCTCATCACAACTAAACTTTTTGCCAAAACCCAACCTTTCCTACTTCATTCTGCACCTCCCCTACCTGTCCGCCAGAGGCCATCAAGAGCAAAGTTCAGCAGAAACAAGCAAATCAACTTCAATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTCCAGAACCTGCCGAAAGGACTAATCTCATCAAAATCCAATGAACATTCCAACTTATCAGCCTTTCTCTCCACCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGTATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTCATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCGGATGCATCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCTCCCGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

mRNA sequence

ATGGTGGGATGGAGGATTTCAGAGATGAAAGCCGAAGATTTTCCACTGGGGTTCATAAAAATTGTTGTTTTTGTTGCTTCTTTGTCCCACCCATTGGATAAGAGAGAATCCACTCCGAACAATTTTATTGGTTGGAATTACCATGACTTGGCTTCTCCTCTGTCTTCCCATCTCCTCATCTCATCACAACTAAACTTTTTGCCAAAACCCAACCTTTCCTACTTCATTCTGCACCTCCCCTACCTGTCCGCCAGAGGCCATCAAGAGCAAAGTTCAGCAGAAACAAGCAAATCAACTTCAATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTCCAGAACCTGCCGAAAGGACTAATCTCATCAAAATCCAATGAACATTCCAACTTATCAGCCTTTCTCTCCACCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGTATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTCATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCGGATGCATCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCTCCCGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Coding sequence (CDS)

ATGGTGGGATGGAGGATTTCAGAGATGAAAGCCGAAGATTTTCCACTGGGGTTCATAAAAATTGTTGTTTTTGTTGCTTCTTTGTCCCACCCATTGGATAAGAGAGAATCCACTCCGAACAATTTTATTGGTTGGAATTACCATGACTTGGCTTCTCCTCTGTCTTCCCATCTCCTCATCTCATCACAACTAAACTTTTTGCCAAAACCCAACCTTTCCTACTTCATTCTGCACCTCCCCTACCTGTCCGCCAGAGGCCATCAAGAGCAAAGTTCAGCAGAAACAAGCAAATCAACTTCAATGGCAGCTACCATGGCAACAATGGCAGTGCTGAGTGTCAAGTGCACAAGCATCAACTCCACCAGAAACCACAACACCCCAAAGCTGATCCCCAAGCCCATCTCCCTTCTCTCTCTCCAGAACCTGCCGAAAGGACTAATCTCATCAAAATCCAATGAACATTCCAACTTATCAGCCTTTCTCTCCACCACCGCCATCGCCGGAGCTGTCTTCTCAGCCCTGAGCTCATCAGATCCTGCCTTCGCAGCCCAACAAATTGCAGATATAGCAGCCGACGGTGACAACCGTGGTATAGCCCTTTTGCTACCTCTTATCCCGGCCATAGCATGGGTTCTGTTCAACATATTACAGCCAGCACTCAACCAGATAAACAGAATGCGCAGTGACAAGGGTGTGATAATTGGGTTGGGATTAGGGGGGTTGACTGCATCAGGGTTCATGTACGCACCTGATGCCTCTGCCAGTGAGCTCGCCATGATTGCGGATGCATCTTCAAGTGATAGCAGGGGCCAGCTTCTGCTGTTTGTCGTAGCTCCCGCCATTCTTTGGGTGCTGTACAACATTCTACAGCCGGCTTTGAATCAGCTCAACAGGATGAGGTCCGAGTGA

Protein sequence

MVGWRISEMKAEDFPLGFIKIVVFVASLSHPLDKRESTPNNFIGWNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWVLYNILQPALNQLNRMRSE

Homology

[Close]

BLAST of CmoCh05G000640 vs. ExPASy Swiss-Prot
Match: P80470 (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBY PE=1 SV=2)

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-47
Identity = 123/209 (58.85%), Postives = 150/209 (71.77%), Query Frame = 0


Query: 101 MAATMA-TMAVLSVKCTSINSTRNHNT-PKLIPKPISLLSLQNLPKGLISSKSNEHSNLS 160
           MAATMA TMAVL+ KC ++N+ +  +T PK   KPISL      P GL +SK      LS
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISL-----SPLGLSNSKL--PMGLS 60

Query: 161 AFLSTTAIAGAVFSALSSSDPAFAAQQIADIAAD---GDNRGIALLLPLIPAIAWVLFNI 220
             ++  AIAGAVF+ L S DPAFA QQ+ADIAA+    DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  PIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120

Query: 221 LQPALNQINRMRSD-KGVIIGLGLGGLTASGFMYA-PDASASELAMIADASSSDSRGQLL 280
           LQPALNQIN+MR++ K  I+GLGL GL  SG + A P+A A+   +   A  SD+RG LL
Sbjct: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEI---ARGSDNRGTLL 180

Query: 281 LFVVAPAILWVLYNILQPALNQLNRMRSE 303
           L VV PAI WVL+NILQPALNQLN+MRS+
Sbjct: 181 LLVVLPAIGWVLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of CmoCh05G000640 vs. ExPASy Swiss-Prot
Match: O49347 (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBY PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.2e-45
Identity = 113/205 (55.12%), Postives = 143/205 (69.76%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 220
           +++TA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 221 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFV 280
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 281 VAPAILWVLYNILQPALNQLNRMRS 302
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

[Close]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL
Match: A0A0A0LKA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 4.3e-103
Identity = 216/258 (83.72%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L+SP   HL+  + +  LPKPNL YFILHL   S     E SS  TSKSTSMAAT
Sbjct: 3   WLYLCLSSP---HLITPNIV--LPKPNLFYFILHLS--STCQSPELSSTVTSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN++SNLS FLS+T
Sbjct: 63  MATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           RMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 RMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRSE
Sbjct: 243 LYNILQPALNQLNRMRSE 253

[Close]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL
Match: A0A5A7UYJ2 (Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001790 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.6e-102
Identity = 216/258 (83.72%), Postives = 229/258 (88.76%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L SP   HL+  + +  LPKPN  YFILHL   S     E SS ETSKSTSMAAT
Sbjct: 3   WLYLCLPSP---HLITPNIV--LPKPNHFYFILHLS--STCQSPELSSTETSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSNE+SNLS FLS+T
Sbjct: 63  MATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           RMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 RMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRS+
Sbjct: 243 LYNILQPALNQLNRMRSK 253

[Close]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL
Match: A0A1S3B9R1 (photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487736 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.6e-102
Identity = 216/258 (83.72%), Postives = 229/258 (88.76%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L SP   HL+  + +  LPKPN  YFILHL   S     E SS ETSKSTSMAAT
Sbjct: 3   WLYLCLPSP---HLITPNIV--LPKPNHFYFILHLS--STCQSPELSSTETSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSNE+SNLS FLS+T
Sbjct: 63  MATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           RMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 RMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRS+
Sbjct: 243 LYNILQPALNQLNRMRSK 253

[Close]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL
Match: A0A6J1BQF3 (photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004808 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 5.7e-87
Identity = 177/202 (87.62%), Postives = 192/202 (95.05%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAATMATMAVLSVKCTSINS++NH TPK I  PISLLSLQNLPK LISSK++++ NLS F
Sbjct: 1   MAATMATMAVLSVKCTSINSSKNHTTPKPITNPISLLSLQNLPKELISSKASQNPNLSTF 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 220
           LS+TAIAGAVFSA SSSDPAFAAQQIA+IAA+GDNRG+ALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSAFSSSDPAFAAQQIAEIAAEGDNRGLALLLPLIPAIAWVLFNILQPAL 120

Query: 221 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPA 280
           NQINRMRSDKGVIIGLGLGGL AS FMYAPDASA+E+AMIADASSSD+RGQLLLFV++PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLAASEFMYAPDASAAEIAMIADASSSDARGQLLLFVISPA 180

Query: 281 ILWVLYNILQPALNQLNRMRSE 303
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL
Match: F6GVJ9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 7.2e-74
Identity = 157/202 (77.72%), Postives = 176/202 (87.13%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAAT+ATMA+L+ KC SINS +N N  K   KPISLLS+QNLPKGL + KS+E+ NLS  
Sbjct: 1   MAATIATMAMLNAKCLSINSPKNLNLSKPTAKPISLLSIQNLPKGLTTLKSSENQNLSTS 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 220
           L+ TAIAGA+FS LSS DPA AAQQIA+I ADGDNRG+ALLLP+IPAIAWVLFNILQPAL
Sbjct: 61  LAGTAIAGAIFSTLSSCDPALAAQQIAEI-ADGDNRGLALLLPIIPAIAWVLFNILQPAL 120

Query: 221 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPA 280
           NQ+N+MRS KGVIIGLGLGGL ASGFM  P ASASE+A +ADA+SSD+RGQLLLFVV PA
Sbjct: 121 NQLNKMRSTKGVIIGLGLGGLAASGFMLTPHASASEIATLADAASSDNRGQLLLFVVTPA 180

Query: 281 ILWVLYNILQPALNQLNRMRSE 303
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 201

[Close]

BLAST of CmoCh05G000640 vs. NCBI nr
Match: XP_038886078.1 (LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 397.5 bits (1020), Expect = 1.0e-106
Identity = 222/258 (86.05%), Postives = 232/258 (89.92%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L SP   HL   S   FLPKPNLSYFILH+P    R   E SS ETSKSTSMAAT
Sbjct: 3   WLYLSLPSP---HL--XSLQTFLPKPNLSYFILHIPPTCQR-PSELSSTETSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+NHNTPK IPKPISLLSLQNLPKGL+SSKSN++SNLS  LS+T
Sbjct: 63  MATMAVLSVKCTSINSTKNHNTPKPIPKPISLLSLQNLPKGLVSSKSNQNSNLSTILSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVFS LSSSDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFSTLSSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           +MRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 KMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRSE
Sbjct: 243 LYNILQPALNQLNRMRSE 254

[Close]

BLAST of CmoCh05G000640 vs. NCBI nr
Match: XP_004142959.3 (photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 8.9e-103
Identity = 216/258 (83.72%), Postives = 230/258 (89.15%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L+SP   HL+  + +  LPKPNL YFILHL   S     E SS  TSKSTSMAAT
Sbjct: 3   WLYLCLSSP---HLITPNIV--LPKPNLFYFILHLS--STCQSPELSSTVTSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSN++SNLS FLS+T
Sbjct: 63  MATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNQNSNLSTFLSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVF+ L SSDPAFAAQQIA+IAADGDNRG+ALLLPLIPA+AWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFATLGSSDPAFAAQQIAEIAADGDNRGLALLLPLIPAVAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           RMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 RMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRSE
Sbjct: 243 LYNILQPALNQLNRMRSE 253

[Close]

BLAST of CmoCh05G000640 vs. NCBI nr
Match: XP_008444395.1 (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis melo] >KAA0061043.1 photosystem II core complex proteins psbY [Cucumis melo var. makuwa])

HSP 1 Score: 382.5 bits (981), Expect = 3.4e-102
Identity = 216/258 (83.72%), Postives = 229/258 (88.76%), Query Frame = 0


Query: 45  WNYHDLASPLSSHLLISSQLNFLPKPNLSYFILHLPYLSARGHQEQSSAETSKSTSMAAT 104
           W Y  L SP   HL+  + +  LPKPN  YFILHL   S     E SS ETSKSTSMAAT
Sbjct: 3   WLYLCLPSP---HLITPNIV--LPKPNHFYFILHLS--STCQSPELSSTETSKSTSMAAT 62

Query: 105 MATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAFLSTT 164
           MATMAVLSVKCTSINST+ HNT K+IPKPISLLSLQNLPKGLISSKSNE+SNLS FLS+T
Sbjct: 63  MATMAVLSVKCTSINSTKTHNTQKIIPKPISLLSLQNLPKGLISSKSNENSNLSTFLSST 122

Query: 165 AIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPALNQIN 224
           AIAGAVF+ L +SDPAFAAQQIA+IAADGDNRG+ALLLPLIPAIAWVLFNILQPALNQIN
Sbjct: 123 AIAGAVFATLGTSDPAFAAQQIAEIAADGDNRGLALLLPLIPAIAWVLFNILQPALNQIN 182

Query: 225 RMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPAILWV 284
           RMRSDKGVIIGLGLGGLTASGFMYAPDASASE+AMIADASSSDSRGQLLLFVVAPAILWV
Sbjct: 183 RMRSDKGVIIGLGLGGLTASGFMYAPDASASEIAMIADASSSDSRGQLLLFVVAPAILWV 242

Query: 285 LYNILQPALNQLNRMRSE 303
           LYNILQPALNQLNRMRS+
Sbjct: 243 LYNILQPALNQLNRMRSK 253

[Close]

BLAST of CmoCh05G000640 vs. NCBI nr
Match: KAG6598253.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 370.5 bits (950), Expect = 1.3e-98
Identity = 200/202 (99.01%), Postives = 201/202 (99.50%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 220
           LS+TAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 221 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPA 280
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 281 ILWVLYNILQPALNQLNRMRSE 303
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of CmoCh05G000640 vs. NCBI nr
Match: KAG7029231.1 (Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 366.3 bits (939), Expect = 2.5e-97
Identity = 198/202 (98.02%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSN HSNLS F
Sbjct: 1   MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNGHSNLSTF 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 220
           LS+TAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL
Sbjct: 61  LSSTAIAGAVFSALSSSDPAFAAQQIADIAADGDNRGIALLLPLIPAIAWVLFNILQPAL 120

Query: 221 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVAPA 280
           NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVV PA
Sbjct: 121 NQINRMRSDKGVIIGLGLGGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFVVTPA 180

Query: 281 ILWVLYNILQPALNQLNRMRSE 303
           ILWVLYNILQPALNQLNRMRSE
Sbjct: 181 ILWVLYNILQPALNQLNRMRSE 202

[Close]

BLAST of CmoCh05G000640 vs. TAIR 10
Match: AT1G67740.1 (photosystem II BY )

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-46
Identity = 113/205 (55.12%), Postives = 143/205 (69.76%), Query Frame = 0


Query: 101 MAATMATMAVLSVKCTSINSTRNHNTPKLIPKPISLLSLQNLPKGLISSKSNEHSNLSAF 160
           MAA MAT    + KC S+N           P P  L + Q   K  IS  +    N+S  
Sbjct: 1   MAAAMAT----ATKCMSLN-----------PSPPKLQN-QTKSKPFISLPTPPKPNVSLA 60

Query: 161 LSTTAIAGAVFSALSSSDPAFAAQQIADIA---ADGDNRGIALLLPLIPAIAWVLFNILQ 220
           +++TA+AGAVFS+LS S+PA A QQIA +A   A  DNRG+ALLLP++PAIAWVL+NILQ
Sbjct: 61  VTSTALAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQ 120

Query: 221 PALNQINRMRSDKGVIIGLGL-GGLTASGFMYAPDASASELAMIADASSSDSRGQLLLFV 280
           PA+NQ+N+MR  KG+++GLG+ GGL ASG +  P  + +  A  A A+SSDSRGQLLL V
Sbjct: 121 PAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPPEAYA--AAEAAAASSDSRGQLLLIV 180

Query: 281 VAPAILWVLYNILQPALNQLNRMRS 302
           V PA+LWVLYNILQPALNQ+N+MRS
Sbjct: 181 VTPALLWVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of CmoCh05G000640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80470	1.9e-47	58.85	Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea OX...	[more]
O49347	5.2e-45	55.12	Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CmoCh05G000640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA1	4.3e-103	83.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G350230 PE=3 SV=1	[more]
A0A5A7UYJ2	1.6e-102	83.72	Photosystem II core complex proteins psbY OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3B9R1	1.6e-102	83.72	photosystem II core complex proteins psbY, chloroplastic OS=Cucumis melo OX=3656...	[more]
A0A6J1BQF3	5.7e-87	87.62	photosystem II core complex proteins psbY, chloroplastic OS=Momordica charantia ...	[more]
F6GVJ9	7.2e-74	77.72	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0137g00210 PE=3 SV=...	[more]

BLAST of CmoCh05G000640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886078.1	1.0e-106	86.05	LOW QUALITY PROTEIN: photosystem II core complex proteins psbY, chloroplastic-li...	[more]
XP_004142959.3	8.9e-103	83.72	photosystem II core complex proteins psbY, chloroplastic [Cucumis sativus]	[more]
XP_008444395.1	3.4e-102	83.72	PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Cucumis mel...	[more]
KAG6598253.1	1.3e-98	99.01	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]
KAG7029231.1	2.5e-97	98.02	Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita arg...	[more]

BLAST of CmoCh05G000640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67740.1	3.7e-46	55.12	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 194..226 e-value: 1.6E-13 score: 50.2 coord: 267..299 e-value: 3.2E-10 score: 39.7
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 194..228 score: 10.886137
IPR038760	Photosystem II PsbY, plant	PANTHER	PTHR34790	PHOTOSYSTEM II CORE COMPLEX PROTEINS PSBY, CHLOROPLASTIC	coord: 101..302
None	No IPR available	PANTHER	PTHR34790:SF2	SUBFAMILY NOT NAMED	coord: 101..302

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G000640.1	CmoCh05G000640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034219	carbohydrate transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0051119	sugar transmembrane transporter activity