CmoCh05G000030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh05G000030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr05: 13032 .. 15153 (+)
RNA-Seq Expression	CmoCh05G000030
Synteny	CmoCh05G000030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAACAGTGCAAAAGCAATCATTCAACACCCACTCCCCGAGCTTTCTCATTGGGTAACTATTTCAAAAGGAAAGATTTTTTTTGGTGATTCTTCACGGTCAGGTCATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGTAACACAAACACTGAAACAATCGGTCATCATGTTTAATTTTAAGCTTTTTTTGGTAAATCTTTCCAGTTTTTCTAATCCGCAAACAGAGAGATCGATCGATTAAAGGAAAAAAATAAACAAATAAAGCGTATGAAAATTTTCATCTTTGACAAGTCCGTGAAGCGAATCAAGGGATCGGGTAGAGCTGTATCTCCTTCCTTTGTGTGCGGATGTGATGAGTGGGCATGTTATGATAAGAGAAAAGTTGCAGTTTTGAATGTTGTTTTTATGCCCCTCTGTTATTTTGGATCATTCTTCTAATCCTGCTTTTTATAGATCCTTAACTGTTAACTGATTGGAACTCTGTTTGATCAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGTACAGTTTCTCAAATCATTGAAATTTGTCCATGTTAAATAAAAGCTCTGCCTTATTTAGTTAGGTTTGTCAAAACATATGAGTTCACGCGAATGGAGGAGCGTGATTCTAGGGGCCATTGTTTTGGCAGAGTGGCGGAGTCTTCGTCCACTTATTCTATTTTTGTATATTTAGTTTTTCTATTTTTGTAATTAGATTTATTATTTAAACCATTCAACGGATGTAAAATAAAGATATCGAGTCTTCAGCATTACCAGCGAATCTCTCTCTCTCTCCTTTTACTTCCGCTAATTTTTCCTTCGAAGAAACCTTCGGCCAATTTTTTCGTCGACATCCGATTTGCCAGAGTCAACAAGTGGTATCAGAGCCTGGTTGAAGCGATCGGTAGTATACCATCACAGAAGAGCCAACCTATCAACAATCAAGTTGAATAGCTCAAGTGGTTAGAGCGTCGACCTAATAACACACAGGTCTTAGGTTCGAGTAGAAGAAAATGCAAAGCGCAAAAATAAATACATCGTGGGGCCCATCTCAAGCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

mRNA sequence

AAAAAAAAAAAAAAAACAGTGCAAAAGCAATCATTCAACACCCACTCCCCGAGCTTTCTCATTGGGTAACTATTTCAAAAGGAAAGATTTTTTTTGGTGATTCTTCACGGTCAGGTCATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

Coding sequence (CDS)

ATGGCGGGTCGGAGGCTATCCTCGCTCTTATCTCGTTCCCTTGCTTCTTCGCCTGCTCTCCTTTCCAAAGGGAGGAGGCCTTCGGGAGGCACAACAACTGGCAAATATAGCACTTCGGCTGCTGTTGAAACCCCGATTACTCCATCCGTGAAAGTGAATTACACCCAGCTATTAATCAACGGACAGTTTCTGGATTCAATCTCAGGCTCGCTCACTCCTCCACGCCGCCAAGTGCCGGCATCTCCATCACCACCACGAAGAGGCCGTGGCCGACATCGTGATGACGGGCGTCGAGTAGTTGTTGAGCGAGTGATCAGAGAGACAACGACCGCCGTCGTTCAGTACCCGATGTTGACAAGGTCCAACTACAACGAGTGGGCCTTGTTGATGCGCGTTAACCTACAGGCGCAAGGGTTATGGCACGCTGTCGAGCCAGAGGAAGGAGAAACAATCGAGTACCGGGAGGATCGGCTGGCGTTCGCCGCCATATTACGATCTGTGCCCCCAGAGATGCTGGCTTCTCTTTCCACCAAGCGCACCGCACAATCGGCCTGGGAGGGAATCAAATCCCGTCGGGTCGGTGTACAGCGAGTGCGGGAATCCAACATCGAGCAACTTCGGAAGGAGCTCTCGGAGATTCGCTTTAAGGACGGCGAATCCGTCGATGATTTTTCAATGCGGATCACGGGGCTCGCCAACAGCATCACCACCCTCGGTGGTGGCATCAGCGAGACAGAAATCGTGAAGAAGATGTTGCAGGTCGTTCCCGATCACCTCGAGCAAGTCGCGATTTCAATCGAGACATTGCTTGACGTGAACGACCTAACAGTGGAAGAGGTGACCGGAAGACTACGTAACGTCGAGCAGCGGAAGAAGAATATCACTTCAGCTGTTGACAAGGAGGGCCGTCTACTCCTCACGGAGGAGGAATGGCTTGCACGCCTAAAGCTCCGCGACAACACCGGCGAGAGCAACGGGTCCTCCTCCAGCCGCAAAGGCGGTAAGAAGCCATGGATGTCCCACGGGCGCACGCGCGGGAAAGATGGGAATCAAAAGAAGGAGTCGACCGGCCGATCCAATGCTCGAACTGTGGGAAGAGAGGACACCTGA

Protein sequence

MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYSTSAAVETPITPSVKVNYTQLLINGQFLDSISGSLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEEEWLARLKLRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKESTGRSNARTVGREDT

Homology

[Close]

BLAST of CmoCh05G000030 vs. ExPASy Swiss-Prot
Match: Q9SU63 (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.3e-09
Identity = 54/135 (40.00%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 1   MAGRRLSSLLSRSLASSPALL--SKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQL 60
           MA RR+SSLLSRS ++S  LL  S+GR    G    ++ T SAA E  I PSV+V++TQL
Sbjct: 1   MAARRVSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQL 60

Query: 61  LINGQFLDSISGSLTPPRRQVPASPSPPRRGRG-RHRDDGRRVVVERVIRETTTAVVQYP 120
           LING F+DS SG   P           PR G    H  +G    + R ++   TA  + P
Sbjct: 61  LINGNFVDSASGKTFP--------TLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGP 120

Query: 121 MLTRSNYNEWALLMR 132
               S Y    +L+R
Sbjct: 121 WPKMSAYERSRVLLR 127

[Close]

BLAST of CmoCh05G000030 vs. ExPASy Swiss-Prot
Match: Q8S528 (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH2B7 PE=1 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 5.2e-07
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1  MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQLLI 60
          MA RR+SSLLSRS  SS   +   R  + G    +YS  +AAVE  ITP VKV +TQLLI
Sbjct: 1  MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQ--RYSNLAAAVENTITPPVKVEHTQLLI 60

Query: 61 NGQFLDSISGSLTP 74
           G+F+D++SG   P
Sbjct: 61 GGRFVDAVSGKTFP 72

[Close]

BLAST of CmoCh05G000030 vs. ExPASy Swiss-Prot
Match: C7A2A0 (Benzaldehyde dehydrogenase, mitochondrial OS=Antirrhinum majus OX=4151 GN=BALDH PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-06
Identity = 36/75 (48.00%), Postives = 45/75 (60.00%), Query Frame = 0


Query: 1  MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYST--SAAVETPITPSVKVNYTQLL 60
          MA  R SSLLSRS+   P L   G++   G    +Y T  +AA+E PI P V V Y +LL
Sbjct: 1  MAAHRFSSLLSRSV---PLLSRGGKQSYLGRGVYRYGTAAAAALEEPIKPPVSVQYDKLL 60

Query: 61 INGQFLDSISGSLTP 74
          INGQF+D+ SG   P
Sbjct: 61 INGQFVDAASGKTFP 72

[Close]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL
Match: Q7XPB1 (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 8.5e-77
Identity = 175/301 (58.14%), Postives = 221/301 (73.42%), Query Frame = 0


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S +PPRR+   SPSP    RGRH   G +VVVERV+RE TT+ V YP LTR+NY +WAL+
Sbjct: 9   SHSPPRRRW-RSPSP---RRGRHGGRG-QVVVERVVREATTSSVVYPTLTRTNYQDWALV 68

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           MRVN+QAQ LW AVEPE  + ++YR+D+ A AAILR+VP EMLA+L+ K TAQ AWE IK
Sbjct: 69  MRVNMQAQCLWGAVEPEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIK 128

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           +RR+GVQRVRE+N +QLR+E  +I FKD E+VDDFSMRI GLAN++ TLG  I+E E+V+
Sbjct: 129 TRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDNITEAEVVQ 188

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSA----VDKEGRLL 309
           K+LQVVP+HL+Q+AISIETLLDVN+L++EEVTGRLR+VEQRK+  T+A    VD  GRLL
Sbjct: 189 KLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAASSRVDANGRLL 248

Query: 310 LTEEEWLARLK----LRDNTGESNGSSSSRKGGKKPWMSHGRTRGK--DGNQKKESTGRS 361
            TEEEWLA+ +    L+D    S+G+   R          GR RGK  DG  K+     +
Sbjct: 249 FTEEEWLAKFRKAASLQDAAHSSSGNGDRR----------GRGRGKKDDGAPKEAQPKPA 294

[Close]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL
Match: Q0J5Y3 (Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 3.3e-73
Identity = 154/289 (53.29%), Postives = 212/289 (73.36%), Query Frame = 0


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+  +    P RGRG     G +++V R I+E   A +QYP LTR+NY+EWA+L
Sbjct: 12  SHTPPRRRRLSISPEPTRGRG-----GPKIIVRRTIKE-ANATIQYPTLTRTNYDEWAML 71

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M+VN++A G+W+AVEP   E +EYR+DRLA AAILRSVP EML +L  KR+A++AW+ IK
Sbjct: 72  MQVNMEAAGIWYAVEPYPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIK 131

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVGV+RVRES  +QLR+E + + +K+GE+ +DFS+RITGLAN++ TLG  IS+ ++V+
Sbjct: 132 TIRVGVERVRESKAQQLRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISDADVVR 191

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           KML VVP+HLEQ+A+++ETLLD+N ++VEEVTGRLR VEQR+      V+ +GRLLLT+E
Sbjct: 192 KMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVNNQGRLLLTQE 251

Query: 310 EWLARLKLRDNTGESNGSSSSRKGG-KKPWMSHGRTRGKDGNQKKESTG 358
           EW+A+LK    +GE    S S  GG K+   S    RGK G+++    G
Sbjct: 252 EWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHDRGKGGSRQAAGPG 294

[Close]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL
Match: Q01HC5 (H0807C06-H0308C08.8 protein OS=Oryza sativa OX=4530 GN=H0807C06-H0308C08.8 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 9.7e-73
Identity = 159/279 (56.99%), Postives = 203/279 (72.76%), Query Frame = 0


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV+RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGSG-QVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I+E E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDILFKDGETVDDFSMRIGVLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTGRLR+VEQ K+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKES 356
           L+D    S+G +S  +G       HG    KD    KE+
Sbjct: 323 LQDAAHSSSGGNSDGQG-----QGHG---NKDDGASKET 352

[Close]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL
Match: Q7X7K3 (OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0046P18.1 PE=4 SV=2)

HSP 1 Score: 282.0 bits (720), Expect = 3.7e-72
Identity = 159/284 (55.99%), Postives = 204/284 (71.83%), Query Frame = 0


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGRG-QVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I++ E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITDAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTG LR+VEQRK+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKESTGRSN 361
           L+D    S+G +S R+G        GR    DG  K+     +N
Sbjct: 323 LQDAAHSSSGGNSDRQG-------QGRGNKDDGASKETQPKPAN 358

[Close]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL
Match: Q8S5D4 (Putative copia-type pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNAa0079B05.14 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 5.7e-65
Identity = 159/301 (52.82%), Postives = 198/301 (65.78%), Query Frame = 0


Query: 66  SISGSLTPPRRQVP------------ASPSPPRRGRGRHRDDGRR---VVVERVIRETTT 125
           S S   TPPR + P             + SPP RGRGR    G R       RV+RE ++
Sbjct: 42  SCSPPPTPPRSRSPLVRPSQTPPCHNPAESPPCRGRGR----GERQPFAAQPRVVRE-SS 101

Query: 126 AVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPE 185
           A V YP+LTR+NY E AL M VN QAQGLWHAVEP E E IEYR+DRL  AAILR VPPE
Sbjct: 102 AAVHYPVLTRTNYEECALFMTVNQQAQGLWHAVEPYEDEEIEYRDDRLVLAAILRVVPPE 161

Query: 186 MLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITG 245
           ML SLSTKRT +SAWE IK+  VG +RVRE+N + LR+E ++ RFKDGE++DDFSMRI G
Sbjct: 162 MLRSLSTKRTVKSAWEAIKTVCVGTRRVREANEQLLRREFADARFKDGENIDDFSMRIFG 221

Query: 246 LANSITTLGGGISETEIVKKMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQR 305
           +ANSI TLGG + E ++              +AISIETLLD+ DL+++EVT RLR+VE+ 
Sbjct: 222 IANSIRTLGGDLPEIDV--------------IAISIETLLDIRDLSIKEVTVRLRSVEKC 281

Query: 306 KKNITSAVDKEGRLLLTEEEWLARLKLRDNTGESNGS---SSSRKGGKKPWMSHGRTRGK 349
           K      VD  GRL+LTEE+WLARLK R+  GES+G+   +++   GKK      R RG+
Sbjct: 282 KAKPKEVVDSGGRLMLTEEQWLARLKNREQGGESSGTTPGAAANNSGKKRGNRRRRGRGQ 323

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: CAE03692.2 (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 297.4 bits (760), Expect = 1.8e-76
Identity = 175/301 (58.14%), Postives = 221/301 (73.42%), Query Frame = 0


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S +PPRR+   SPSP    RGRH   G +VVVERV+RE TT+ V YP LTR+NY +WAL+
Sbjct: 9   SHSPPRRRW-RSPSP---RRGRHGGRG-QVVVERVVREATTSSVVYPTLTRTNYQDWALV 68

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           MRVN+QAQ LW AVEPE  + ++YR+D+ A AAILR+VP EMLA+L+ K TAQ AWE IK
Sbjct: 69  MRVNMQAQCLWGAVEPEGDDLVDYRQDQQALAAILRAVPAEMLATLAVKETAQEAWEAIK 128

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           +RR+GVQRVRE+N +QLR+E  +I FKD E+VDDFSMRI GLAN++ TLG  I+E E+V+
Sbjct: 129 TRRIGVQRVREANAQQLRREFGDILFKDDETVDDFSMRIGGLANNLRTLGDNITEAEVVQ 188

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSA----VDKEGRLL 309
           K+LQVVP+HL+Q+AISIETLLDVN+L++EEVTGRLR+VEQRK+  T+A    VD  GRLL
Sbjct: 189 KLLQVVPEHLQQIAISIETLLDVNELSLEEVTGRLRSVEQRKQCKTAAASSRVDANGRLL 248

Query: 310 LTEEEWLARLK----LRDNTGESNGSSSSRKGGKKPWMSHGRTRGK--DGNQKKESTGRS 361
            TEEEWLA+ +    L+D    S+G+   R          GR RGK  DG  K+     +
Sbjct: 249 FTEEEWLAKFRKAASLQDAAHSSSGNGDRR----------GRGRGKKDDGAPKEAQPKPA 294

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: XP_006648554.1 (uncharacterized protein LOC102717319 [Oryza brachyantha])

HSP 1 Score: 292.0 bits (746), Expect = 7.4e-75
Identity = 153/244 (62.70%), Postives = 186/244 (76.23%), Query Frame = 0


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+ P SP    RGRG            R++RE++ + +QYP+LTR+NY EWALL
Sbjct: 31  SRTPPRRRAPESPLRYERGRGYGTQP------PRIVRESSGS-IQYPVLTRTNYEEWALL 90

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M VNLQAQGLWHAVEP E E +EYR+DRLA AAILR+VPPEML SLS KRT+QSAWE IK
Sbjct: 91  MTVNLQAQGLWHAVEPYEDEEVEYRDDRLALAAILRAVPPEMLRSLSIKRTSQSAWEAIK 150

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVG +RVRE+N + LR+E  + RFKDGE+VDDFSMR+ G+AN+I TLGG + E ++V 
Sbjct: 151 TVRVGTRRVREANEQLLRREFGDARFKDGENVDDFSMRLNGIANNIRTLGGDLPEVDVVN 210

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           K+L VVP+HL Q+AISIETLLD  DL++EEVTGRLR  E+RK      VD  GRLLLTEE
Sbjct: 211 KLLNVVPEHLSQIAISIETLLDARDLSIEEVTGRLRAAEKRKPKPKEIVDSGGRLLLTEE 267

Query: 310 EWLA 314
           +W A
Sbjct: 271 QWQA 267

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: BAF23632.1 (Os08g0389500 [Oryza sativa Japonica Group])

HSP 1 Score: 285.4 bits (729), Expect = 6.9e-73
Identity = 154/289 (53.29%), Postives = 212/289 (73.36%), Query Frame = 0


Query: 70  SLTPPRRQVPASPSPPRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALL 129
           S TPPRR+  +    P RGRG     G +++V R I+E   A +QYP LTR+NY+EWA+L
Sbjct: 12  SHTPPRRRRLSISPEPTRGRG-----GPKIIVRRTIKE-ANATIQYPTLTRTNYDEWAML 71

Query: 130 MRVNLQAQGLWHAVEPEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIK 189
           M+VN++A G+W+AVEP   E +EYR+DRLA AAILRSVP EML +L  KR+A++AW+ IK
Sbjct: 72  MQVNMEAAGIWYAVEPYPDEEVEYRDDRLALAAILRSVPSEMLPTLRGKRSARAAWDAIK 131

Query: 190 SRRVGVQRVRESNIEQLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVK 249
           + RVGV+RVRES  +QLR+E + + +K+GE+ +DFS+RITGLAN++ TLG  IS+ ++V+
Sbjct: 132 TIRVGVERVRESKAQQLRREFAALTWKEGETAEDFSVRITGLANNLRTLGDNISDADVVR 191

Query: 250 KMLQVVPDHLEQVAISIETLLDVNDLTVEEVTGRLRNVEQRKKNITSAVDKEGRLLLTEE 309
           KML VVP+HLEQ+A+++ETLLD+N ++VEEVTGRLR VEQR+      V+ +GRLLLT+E
Sbjct: 192 KMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTGRLRAVEQRRHRSAPVVNNQGRLLLTQE 251

Query: 310 EWLARLKLRDNTGESNGSSSSRKGG-KKPWMSHGRTRGKDGNQKKESTG 358
           EW+A+LK    +GE    S S  GG K+   S    RGK G+++    G
Sbjct: 252 EWMAKLKNPGASGEKGTPSGSGGGGNKRTGGSRRHDRGKGGSRQAAGPG 294

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: CAH68021.1 (H0807C06-H0308C08.8 [Oryza sativa])

HSP 1 Score: 283.9 bits (725), Expect = 2.0e-72
Identity = 159/279 (56.99%), Postives = 203/279 (72.76%), Query Frame = 0


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV+RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGSG-QVVVDRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I+E E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDILFKDGETVDDFSMRIGVLANNLRTLGDNITEAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTGRLR+VEQ K+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGRLRSVEQSKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKES 356
           L+D    S+G +S  +G       HG    KD    KE+
Sbjct: 323 LQDAAHSSSGGNSDGQG-----QGHG---NKDDGASKET 352

[Close]

BLAST of CmoCh05G000030 vs. NCBI nr
Match: CAE03285.2 (OSJNBb0046P18.1 [Oryza sativa Japonica Group])

HSP 1 Score: 282.0 bits (720), Expect = 7.6e-72
Identity = 159/284 (55.99%), Postives = 204/284 (71.83%), Query Frame = 0


Query: 85  PRRGRGRHRDDGRRVVVERVIRETTTAVVQYPMLTRSNYNEWALLMRVNLQAQGLWHAVE 144
           P   RGRH   G +VVV RV+RE TT+ V YP LTR+NY +W L+MRVN+QAQGLW AVE
Sbjct: 83  PSPRRGRHGGRG-QVVVHRVVREVTTSSVVYPTLTRTNYQDWVLVMRVNMQAQGLWGAVE 142

Query: 145 PEEGETIEYREDRLAFAAILRSVPPEMLASLSTKRTAQSAWEGIKSRRVGVQRVRESNIE 204
           PE  + ++YR+DR A  AILR+VP EMLA+L+ K T Q AWE IK+RR+GVQ VRE+N +
Sbjct: 143 PEGDDLVDYRQDRQALTAILRAVPAEMLATLAVKETVQEAWEAIKTRRIGVQHVREANAQ 202

Query: 205 QLRKELSEIRFKDGESVDDFSMRITGLANSITTLGGGISETEIVKKMLQVVPDHLEQVAI 264
           QLR+E  +I FKDGE+VDDFSMRI  LAN++ TLG  I++ E+V+K+LQVVP+HL+Q+AI
Sbjct: 203 QLRREFGDIIFKDGETVDDFSMRIGVLANNLRTLGDNITDAEVVQKLLQVVPEHLQQIAI 262

Query: 265 SIETLLDVNDLTVEEVTGRLRNVEQRKKN----ITSAVDKEGRLLLTEEEWLARLK---- 324
           SIETLLDVN+L++EEVTG LR+VEQRK+      +S VD  G LL TEEEWLA+ +    
Sbjct: 263 SIETLLDVNELSLEEVTGSLRSVEQRKQRKAVAASSRVDAYGCLLFTEEEWLAKFRKAAS 322

Query: 325 LRDNTGESNGSSSSRKGGKKPWMSHGRTRGKDGNQKKESTGRSN 361
           L+D    S+G +S R+G        GR    DG  K+     +N
Sbjct: 323 LQDAAHSSSGGNSDRQG-------QGRGNKDDGASKETQPKPAN 358

[Close]

BLAST of CmoCh05G000030 vs. TAIR 10
Match: AT3G48000.1 (aldehyde dehydrogenase 2B4 )

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-10
Identity = 54/135 (40.00%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 1   MAGRRLSSLLSRSLASSPALL--SKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQL 60
           MA RR+SSLLSRS ++S  LL  S+GR    G    ++ T SAA E  I PSV+V++TQL
Sbjct: 1   MAARRVSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQL 60

Query: 61  LINGQFLDSISGSLTPPRRQVPASPSPPRRGRG-RHRDDGRRVVVERVIRETTTAVVQYP 120
           LING F+DS SG   P           PR G    H  +G    + R ++   TA  + P
Sbjct: 61  LINGNFVDSASGKTFP--------TLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGP 120

Query: 121 MLTRSNYNEWALLMR 132
               S Y    +L+R
Sbjct: 121 WPKMSAYERSRVLLR 127

[Close]

BLAST of CmoCh05G000030 vs. TAIR 10
Match: AT1G23800.1 (aldehyde dehydrogenase 2B7 )

HSP 1 Score: 57.0 bits (136), Expect = 3.7e-08
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 1  MAGRRLSSLLSRSLASSPALLSKGRRPSGGTTTGKYST-SAAVETPITPSVKVNYTQLLI 60
          MA RR+SSLLSRS  SS   +   R  + G    +YS  +AAVE  ITP VKV +TQLLI
Sbjct: 1  MASRRVSSLLSRSFMSSSRSIFSLRGMNRGAQ--RYSNLAAAVENTITPPVKVEHTQLLI 60

Query: 61 NGQFLDSISGSLTP 74
           G+F+D++SG   P
Sbjct: 61 GGRFVDAVSGKTFP 72

The following BLAST results are available for this feature:

BLAST of CmoCh05G000030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SU63	4.3e-09	40.00	Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana...	[more]
Q8S528	5.2e-07	51.35	Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana...	[more]
C7A2A0	4.4e-06	48.00	Benzaldehyde dehydrogenase, mitochondrial OS=Antirrhinum majus OX=4151 GN=BALDH ...	[more]

BLAST of CmoCh05G000030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q7XPB1	8.5e-77	58.14	OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0026E...	[more]
Q0J5Y3	3.3e-73	53.29	Os08g0389500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0389500 PE...	[more]
Q01HC5	9.7e-73	56.99	H0807C06-H0308C08.8 protein OS=Oryza sativa OX=4530 GN=H0807C06-H0308C08.8 PE=4 ...	[more]
Q7X7K3	3.7e-72	55.99	OSJNBb0046P18.1 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0046P1...	[more]
Q8S5D4	5.7e-65	52.82	Putative copia-type pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]

BLAST of CmoCh05G000030 vs. NCBI nr


Match Name	E-value	Identity	Description
CAE03692.2	1.8e-76	58.14	OSJNBb0026E15.10 [Oryza sativa Japonica Group]	[more]
XP_006648554.1	7.4e-75	62.70	uncharacterized protein LOC102717319 [Oryza brachyantha]	[more]
BAF23632.1	6.9e-73	53.29	Os08g0389500 [Oryza sativa Japonica Group]	[more]
CAH68021.1	2.0e-72	56.99	H0807C06-H0308C08.8 [Oryza sativa]	[more]
CAE03285.2	7.6e-72	55.99	OSJNBb0046P18.1 [Oryza sativa Japonica Group]	[more]

BLAST of CmoCh05G000030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48000.1	3.0e-10	40.00	aldehyde dehydrogenase 2B4	[more]
AT1G23800.1	3.7e-08	51.35	aldehyde dehydrogenase 2B7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 277..297
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 155..293 e-value: 5.4E-18 score: 65.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..334
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 320..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..40
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 101..355
None	No IPR available	PANTHER	PTHR34676:SF11	ZINC FINGER, CCHC-TYPE-RELATED	coord: 101..355
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 118..144 e-value: 2.4E-8 score: 33.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G000030.1	CmoCh05G000030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
molecular_function	GO:0005488	binding