CmoCh04G030940 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G030940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptiontRNA (Adenine(58)-N(1))-methyltransferasenon-catalytic subunit TRM6
LocationCmo_Chr04: 21550381 .. 21552806 (+)
RNA-Seq ExpressionCmoCh04G030940
SyntenyCmoCh04G030940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTGGATGGAGGAATTACCTTGGTTCCGCGCTGGCGGACGATAATGGAACCGGGCTTGGCGACTTGATCACCAAAGATTTTGACGCCGAGCCTCTGGCCTTTAGAATCGCGGCCATTCTTGGTGCTTCCAGCTCCTTTCTTGTGTGCACTTTCTATGGTTAAAGGGAATCTGTTAGGAAAGGAGACGGAGAGGTTGGGAGGGGGTTGAATGGAGCCGAAATCGCCCTTGAAGAAGGAAGAAGAAGAGGAAGAGACCAGAGAGAGGCCTCTGAATGCACCAACTAGGTTTAAGGTCATGGCTGTAACAGGCATTTCCGCTGTGACCAGAAACAAATTTTGAAGCGCAGAAAATGAATGAACAAGTGGAAGGGACGAAACAGGATTGAAGACGGGGAGCGAATGCGAACCTTATCCTTGGAATCACAACCGCCGCAATTCTACAGAAACTGTAAGACAGAGGCAAAAATGAAACGACGACGCTATGGCCAAGCTTAAAATTTAATGTTCCAAAGCCAAGCCAAGCCAAGGGCACATCTTGCATTTTAATCACAAATCATTTGCATTCCTGGTTTCGAATGATGATTTGTAATTTAGAAAAGTCATATAATATAAAATGAAATTATAAAGAATAAGAATACTTTCATTTAGGGATGTCCACGAAGCAGGGAGGGGACGGGAAGCCTTACTCATCCCCATCTCTACCATCTATTTCATTCTTCATTTCTGTGAAATCCTCCCTCTATTTTTGTGGAGATCGAAGCAGGCCATGAAAAGTTTTCGGGGATGATCACATGAATAAAATTTAAAAATTCTCTCTTTGAAAATATATTTATATTTACATGACGAAAAATATAATTCCGTCTCCGACCCTATTTATCTATCGGATAAAAATCCCTACCCCACACTCTCTCTCTGTCTAAATGGATAATTTCACCCCATTCGAAATTGGGCCCCGAATTAAATGGACATTTCTACTTTCACTTATCCTAACTATGGATGGTAACTTTTGACTTAGTTTTGATGGTTTCATTTGTAGTCAACTAAAACGAACTCATCAATTATTCAAAAGAGGTTTAGAGTTAAACATCGATTATTCAAAAGAGGTTAAAGAGTTAAACAAAAAGAGGTTAAACAGTTAAACCTCAATTATTCAAAAGAGGTTAAAGAGTTAATATGTTTAACGCAGGCATTCACACTTAAACCATTCAAATATATTGTTTGCAATAACTTACGTTTACATTAATGCATTGAAATATCCTTTTAATCTCATTAGAATCGAGACTCAACATTTCTAGCGACAATATTTCCTTCATAACTAGGATAGGCAAATTTCAATATATTTTGATTCTTTTACTAAGATAGTAAATTGCAAGTCAAATAAAAACTAATTCTGCTATCTTGAGATGCAAGATCTTCCCATCATTTCACATATTATCTCAAATTACATCCCAACTACAAAATAACTACGAATCATCCCATTGATGAGGGTAAGGATCTATATATCAAATGAGAAAAAACTAACCACGTTGCAGCACCAGATACCCTTGAGAAGAACTAAGGAAAAAACAGCAAAAATGGGAAGCAGATGAGCTAGAACTGATAGGTACTACCCTTACTTGGTCTAGATGCAGAACTCTTATTTGTTTGACCCTGCTGTTGAGGAGTCCGAAACTTTTTCACGCTGAACTGCTCGAGGAACAAACGTTAACCCTCGAGTGTGCCTTCGACCAAAGCTGACTGATGATGGAGTTGAGTCCGAAGTACTTAGTTTAGATACTCCCAAAATGAGGCCATCCATAGTTTCATTCTCGACTTCCATTATGGAAGTTTCTTCCCTTGGTTGAAGTACTTGTTTTCGATATAATTTCTGTCTTTGTTTCTTAGAAGGAGGAGCCTTCTTAAAGAATTCAAATGAAGCAGAAAACTTATGTTTGTCCACTAGATGCTGCTGTCTGCTTTTGTAGCTCTTGAACTTCAACCCACAACCTTCCACCAGGCATTCATACTGTGAAATATTTCAAGTTACATCAATCAGTAGCATATTTAAAGTGAAATGATAATATAATCTAAAAAAGAGATGGGGTTATATGACTTATCCTTTCATTCTATTGCAACAATGCTACTCTTATTCTGTTTCAGTGTTCTTCTCGACCAAGAATTTGGAAAAGAAATCAAGTTTACAATTATACTAGTAGGTCAGTCCCCCAGAAAACTAAAGTCCGATCCCTCCCCACTAACAATGATCAAAAGCTTCATGCTCAAGTCTGTTGTCCTAAACATACAGAGCAATAACAATATATGAACTATTGAAACTTCAACGTAGACCTCAAAGCCCCAACTCGATAAAAAGGACAATGTGAAGCATAAGTAATTCCCTGTATCTACAGATCAGTACAGATGCAGAACAGAAATATATAGGATAA

mRNA sequence

ATGCGTGGATGGAGGAATTACCTTGGTTCCGCGCTGGCGGACGATAATGGAACCGGGCTTGGCGACTTGATCACCAAAGATTTTGACGCCGAGCCTCTGGCCTTTAGAATCGCGGCCATTCTTGGTGCTTCCAGCTCCTTTCTTATCAGTACAGATGCAGAACAGAAATATATAGGATAA

Coding sequence (CDS)

ATGCGTGGATGGAGGAATTACCTTGGTTCCGCGCTGGCGGACGATAATGGAACCGGGCTTGGCGACTTGATCACCAAAGATTTTGACGCCGAGCCTCTGGCCTTTAGAATCGCGGCCATTCTTGGTGCTTCCAGCTCCTTTCTTATCAGTACAGATGCAGAACAGAAATATATAGGATAA

Protein sequence

MRGWRNYLGSALADDNGTGLGDLITKDFDAEPLAFRIAAILGASSSFLISTDAEQKYIG
Homology
[Close]
BLAST of CmoCh04G030940 vs. ExPASy TrEMBL
Match: A0A5A7QPL0 (tRNA (Adenine(58)-N(1))-methyltransferasenon-catalytic subunit TRM6 OS=Striga asiatica OX=4170 GN=STAS_23866 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.4e-04
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 8  LGSALADDNGTGLGDLITKDFDAEPLAFRIAAILGASSSFLISTDAEQ 56
          LG+ LADDNG GL  L+ +D D +PL  R+ A+L A+SSFL+     Q
Sbjct: 17 LGATLADDNGAGLRGLVAEDLDPKPLPLRVTAVLSATSSFLVRRQNRQ 64

[Close]
BLAST of CmoCh04G030940 vs. NCBI nr
Match: GER46802.1 (tRNA (adenine(58)-N(1))-methyltransferasenon-catalytic subunit TRM6 [Striga asiatica])

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-04
Identity = 24/48 (50.00%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 8  LGSALADDNGTGLGDLITKDFDAEPLAFRIAAILGASSSFLISTDAEQ 56
          LG+ LADDNG GL  L+ +D D +PL  R+ A+L A+SSFL+     Q
Sbjct: 17 LGATLADDNGAGLRGLVAEDLDPKPLPLRVTAVLSATSSFLVRRQNRQ 64

The following BLAST results are available for this feature:
BLAST of CmoCh04G030940 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7QPL03.4e-0450.00tRNA (Adenine(58)-N(1))-methyltransferasenon-catalytic subunit TRM6 OS=Striga as... [more]
BLAST of CmoCh04G030940 vs. NCBI nr
Match NameE-valueIdentityDescription
GER46802.17.1e-0450.00tRNA (adenine(58)-N(1))-methyltransferasenon-catalytic subunit TRM6 [Striga asia... [more]
BLAST of CmoCh04G030940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030940.1CmoCh04G030940.1mRNA