CmoCh04G030870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G030870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribosome-recycling factor, chloroplastic
Location	Cmo_Chr04: 21526956 .. 21529319 (-)
RNA-Seq Expression	CmoCh04G030870
Synteny	CmoCh04G030870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGGGTTTTCTAAATCTCCATCCGTTGGGTTTTACGAAAAACCCTAGTTAGAAAGCTTAGCAAGCATCGACATGATCAAATAAGTCCGGGATTTCGATCCGTTCAAGCACGACGGTCTTCTTCAATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACTTTTCCTTCTTCGTTTACGATCTCTGTAATCCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGATTTGCTAAAGGCCGAAAATCAAGTAACCGTCTTTTCATCTCTTATTATGCTTGATCTTCAAATCATTATTTCTCATGAAATCGGAAATTTGTTTCATTGGCTTCAAATTTTCATTGCCGTTTCGACTTTTCTCTTAATCTTGTTGAGTATATTGTTCATGTCCCTCCTGCTTCTTACAAGTTCCGGTTTTTAATTTTTGCATTGAGAAGACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCAAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGTATGTTTACCATCATATTATGTACCATTTACGCTTCGAGGTTCCATTATGTTAGCTTGGCCTTTTGATTACTCACACTTTCTTATACTTTGTATTTACAGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATGTAATCAACTTGCAAAACCCTATTGTTCCTTAATTTATTGTGTTTTCTTCTTCATGGCATGTTAATTACTTAGATTCATGATTATTTGTGATAAAGAGACTTAACAGAGTAAATCTTGAATATATATTCTTTTAAGTTATGTTTTATTAGATCATTATCTTAATAAGATTCTTGTTTCTACTCTACCCAACATGAGAATTCATACTTGAAAAGGCTAATCTGAATGGGCTACTTATGATAGTTACTGTTCTATGCAGACACTAAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCGTAAGCTTTCATTTGGCTCTAAGAATTATCAGGACAAAATAGTTGTCTAGAAGCTGTTCTTTTACTAATAAAATTTTCCTTTTGTTCTTGCTATACCAGATTGACCAAAGAGCATATCCAGGTAGTCTTCAAGTCTTTTTTCATCCCTCCTTGTTATCAACTTATCACCTTCCTTCTTTCTATAGTGCTTTCATGGTGGATATTTTTGTAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGGTATTTTTAGTTGTACCGTCCTGCTGTAAATTTCCTTTTCAGAAATCTGTGTACTTAATCATCAAGGGGGCTGTTCTTATTGATACATGATGTACCTAGTGTGGTAAGCTCAACAGTTGTAGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTGTTCCTTTTCCAATTGTGAGTTATAATCAATTACAACTGATACTCTGCGCATTCCCAGTTTCAAAATCAATGCCTTGATTTTATGTATGACAAGTTGAATCAGCCTGCAAAAGCAATTTAAGCTCTTTATTTGATATTTGCACTATTTCAGAGTTATGAGTTGATTGGTGGTTGATTCGCAGGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTGAGTTGTTGTAGACGTTGGTTGTTACCTAATCAAATCATAGTTAAAGTTTGGAACTTGCTTTTTTATTTATTAAAATCTTGTTACGTTTTTTCTTCTTCCAGGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCTGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGAATATTTGGAAAAGAAGATTATCTCGTTCTCAATTTTGACAGATTAATTTAAACTCTATTATAGAGCTTTTCATAACCCATTTTGAGGGATGAAACAGAGGCGAACATCTGTCATATTTGGAAACATAGACGCAGTCCAAATGAAATTCTGTGGGTGTTGTTTTCACCTGAATGGATTCACATGTGGCAACAAGTATTAGGGTTTGCTTCTTCCAACTCGAAAAGAG

mRNA sequence

AAAAAAAAAGGGTTTTCTAAATCTCCATCCGTTGGGTTTTACGAAAAACCCTAGTTAGAAAGCTTAGCAAGCATCGACATGATCAAATAAGTCCGGGATTTCGATCCGTTCAAGCACGACGGTCTTCTTCAATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACTTTTCCTTCTTCGTTTACGATCTCTGTAATCCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGATTTGCTAAAGGCCGAAAATCAAACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCAAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATACACTAAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGTGTGGTAAGCTCAACAGTTGTAGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTGTTCCTTTTCCAATTGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCTGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGAATATTTGGAAAAGAAGATTATCTCGTTCTCAATTTTGACAGATTAATTTAAACTCTATTATAGAGCTTTTCATAACCCATTTTGAGGGATGAAACAGAGGCGAACATCTGTCATATTTGGAAACATAGACGCAGTCCAAATGAAATTCTGTGGGTGTTGTTTTCACCTGAATGGATTCACATGTGGCAACAAGTATTAGGGTTTGCTTCTTCCAACTCGAAAAGAG

Coding sequence (CDS)

ATGGCTATGTTTCTCAAACGTTCTTTCTCCTACAGGAATTTCCTTCTTCTCCGAAATTTTGCCAATCCAAGTCGTAACTTTTCCTTCTTCGTTTACGATCTCTGTAATCCATGGACCTCCGAGATGCCTGGAGCCTTTGCTCTTCCTCCTGCAGATTTCATCCGAGAAAGTCGTCGGGGATTTGCTAAAGGCCGAAAATCAAACGAATCTTCTACAAGTATGGCTGAAGCATTACCTGATATTAGACCAACTATTAAAGCAAACGCTAGCTCACAGATGGAGGCTGCGATATCTGCATTATCAGGAGAATTGAGCAAACTTCGAACAGGAAGGGCATCATCTGGAATGCTTGACCACATTATAGTAGAAATTTCAGGTGTGAGGATGCCGCTGAATCAGATCGCAGCTGTTTCGGTCTTGGATTCAAAAACACTGTCAATAAATCCTTATGATCCTAATACACTAAAGAACTTAGAGAGTGCTATAGTTTCATCTCCTCTAGGTTTAGCGCCAAGAGTAGATGGAGAGAGGTTAATTGCAGTCATTCCACCATTGACCAAAGAGCATATCCAGGCTATGTGTAAGCTGGTCACCAAGTGTTGTGAAGATTCCAGACAAAGCATACGACGAGCTCGTCAAAAGTGTGGTAAGCTCAACAGTTGTAGGAATGTCAGGATTTCTATAGTCATCTGGACAAATTCACCTCTGAATCGCAAATCTCCCCTCTTACTAAACCCTGTTCCTTTTCCAATTGCAATGGATACAGTAAAAAAGATGAGCTCAAGCTACCCGAAGGATGACATGAAAAGATTGGAAAAGGAAGTAGATGAATTGACCAAGAAGTTTATCAAGTCAGCTGAAGACCTCTGCAAGGCTAAGGAGAAGGAGATCACTGGAGGTTGA

Protein sequence

MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRGFAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG

Homology

[Close]

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot
Match: Q5WFT1 (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=frr PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22
Identity = 69/215 (32.09%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 85  IKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKT 144
           IKA+A ++M+ AI  LS EL+KLR GRA+  +LD + VE  G + PLNQ+A+V+V +++ 
Sbjct: 5   IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARL 64

Query: 145 LSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDS 204
           L I PYD   + ++E AI+ S LGL P  DG+ +   IPPLT+E  + + +LV+K  E+S
Sbjct: 65  LLITPYDKTAVASIEKAILKSDLGLTPSNDGQVIRIAIPPLTEERRKDLVRLVSKTAEES 124

Query: 205 RQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSS 264
           + ++R  R+                                      A D +KK+     
Sbjct: 125 KVAVRNIRRD-------------------------------------ANDELKKLQKDGE 182

Query: 265 YPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
             +D+++    ++ +LT  ++   ++  K KE+EI
Sbjct: 185 MTEDELRSATDDIQKLTDTYVAKIDEKAKQKEQEI 182

[Close]

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot
Match: Q9KA66 (Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=frr PE=3 SV=3)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-22
Identity = 70/210 (33.33%), Postives = 109/210 (51.90%), Query Frame = 0


Query: 88  NASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSI 147
           +A  +M  A  AL  EL+KLR GRA+  MLD I VE  G   PLNQ+A +SV +++ L I
Sbjct: 8   DAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVI 67

Query: 148 NPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQS 207
            P+D +++ ++E AI  S LGL P  DG  +   IPPLT+E  + + KLV K  E+++ +
Sbjct: 68  QPFDKSSISDIERAIQKSDLGLTPSNDGTVIRITIPPLTEERRRDLTKLVKKSAEEAKVA 127

Query: 208 IRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDD 267
           +R  R+                   N  L +                  ++      +DD
Sbjct: 128 VRNIRRD-----------------ANDDLKK------------------RQKDGELTEDD 182

Query: 268 MKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
           ++R+ ++V +LT K+I+  +   +AKEKEI
Sbjct: 188 LRRVTEDVQKLTDKYIEQIDQKAEAKEKEI 182

[Close]

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot
Match: B8DSA1 (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F) OX=883 GN=frr PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.7e-22
Identity = 70/216 (32.41%), Postives = 117/216 (54.17%), Query Frame = 0


Query: 84  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSK 143
           +I  +A  +ME A+ +L  E +KLRTGRAS+ ++D+I V+  G   P++Q+A+VSV DS+
Sbjct: 5   SILLDAEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSR 64

Query: 144 TLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCED 203
           TL+I P+D +  + +E AI+ S LGL P  DG+ +   IPPLT+E  + + K+  K  E+
Sbjct: 65  TLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEE 124

Query: 204 SRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SS 263
           ++ ++R  R+                                      A D +KK+    
Sbjct: 125 AKVAVRNVRRD-------------------------------------ANDALKKLEKGK 183

Query: 264 SYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
              +DD+++   +V +LT +F+  +++ C AKEKEI
Sbjct: 185 EISEDDVRKSTDDVQKLTDRFVAKSDEKCTAKEKEI 183

[Close]

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot
Match: Q313G7 (Ribosome-recycling factor OS=Desulfovibrio alaskensis (strain ATCC BAA 1058 / DSM 17464 / G20) OX=207559 GN=frr PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 8.0e-22
Identity = 72/216 (33.33%), Postives = 111/216 (51.39%), Query Frame = 0


Query: 84  TIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSK 143
           TI      +ME A++AL  E  +LRTGRAS+ ++D I V+  G   P+NQ+A+V+V DS+
Sbjct: 3   TILLETEERMEKAVAALDREFGRLRTGRASTSLVDSIKVDYYGTPTPINQLASVAVPDSR 62

Query: 144 TLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCED 203
           T++I P+D      +E AI+ S LGL P  DG+ +   +PPLT+E  + + K+  K  ED
Sbjct: 63  TITIQPWDRGAFALVEKAIMQSDLGLTPINDGKIIRISMPPLTEERRKELVKVAKKYTED 122

Query: 204 SRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SS 263
           ++ ++R  R+                                      A + +KKM    
Sbjct: 123 AKVAVRNIRRD-------------------------------------ANEQIKKMEKDK 181

Query: 264 SYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
           +  +DDMKR + EV +LT  F+  +E +   KEKEI
Sbjct: 183 AITEDDMKRGQDEVQKLTDAFVAKSEKVLAKKEKEI 181

[Close]

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot
Match: Q5L0J9 (Ribosome-recycling factor OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=frr PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 67/211 (31.75%), Postives = 111/211 (52.61%), Query Frame = 0


Query: 89  ASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSIN 148
           A  +M+ A+ A + EL+ +R GRA++G+L+ + V+  GV  P+NQ+A++SV +++ L I 
Sbjct: 9   AKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQ 68

Query: 149 PYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSI 208
           PYD + +K +E AI++S LGL P  DG  +  VIPPLT+E  + + KLV K  ED++ ++
Sbjct: 69  PYDKSAIKEMEKAILASDLGLTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEDAKVAV 128

Query: 209 RRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKM--SSSYPKD 268
           R  R+                                      A D +KK+  +    +D
Sbjct: 129 RNIRRD-------------------------------------ANDELKKLEKNGEITED 182

Query: 269 DMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
           +++    EV +LT   I   + + K KEKE+
Sbjct: 189 ELRSYTDEVQKLTDDHIAKIDAITKEKEKEV 182

[Close]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL
Match: A0A6J1GLU1 (Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111455524 PE=3 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.2e-133
Identity = 263/300 (87.67%), Postives = 263/300 (87.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL
Match: A0A6J1JKE4 (Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487708 PE=3 SV=1)

HSP 1 Score: 473.4 bits (1217), Expect = 7.0e-130
Identity = 258/300 (86.00%), Postives = 260/300 (86.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSF YR+FLLLRNFANPSRNFSFFV DLCNPWTSEMPG FALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL
Match: A0A6J1BWU9 (Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006057 PE=3 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 8.9e-117
Identity = 237/300 (79.00%), Postives = 246/300 (82.00%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRS SYRNFLL RN A PSR FSFFV D    WTSE PG FALPPADFIRESRRG
Sbjct: 1   MAMFLKRSLSYRNFLLFRNSAVPSRKFSFFVNDPSIAWTSETPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAK RKSN+SSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKARKSNDSSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SG++MPLNQIA VSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVETSGLKMPLNQIAVVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHI A+CKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHILAVCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDT+KKM++SYPKDD+KRLEKEVDELTKKFIKSAEDLCKAKEKEI GG
Sbjct: 241 -----------AMDTIKKMNASYPKDDIKRLEKEVDELTKKFIKSAEDLCKAKEKEIAGG 263

[Close]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL
Match: A0A5D3DLY3 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00450 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.7e-115
Identity = 232/300 (77.33%), Postives = 248/300 (82.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFAN + NFSF +    N WTS+    FALPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE+LCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKISSSYPKDDMKRLEKEVDELTKKFIKSAEELCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL
Match: A0A1S3B2S9 (Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 3.7e-115
Identity = 232/300 (77.33%), Postives = 248/300 (82.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNF++LRNFAN + NFSF +    N WTS+    FALPP+DFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFIILRNFANQTCNFSFSLNHFSNSWTSDTSAGFALPPSDFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTS+AEAL DIRPTIK+NASSQMEA+I ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSIAEALTDIRPTIKSNASSQMEASIVALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVE SGV++PLNQIAAVSVLDSKTLSINPYDP+TLKNLESAI+SSPLG+APRVDGERLIA
Sbjct: 121 IVETSGVKLPLNQIAAVSVLDSKTLSINPYDPSTLKNLESAIISSPLGVAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKK+SSSYPKDDMKRLEKEVDELTKKFIKSAE+LCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKISSSYPKDDMKRLEKEVDELTKKFIKSAEELCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. NCBI nr
Match: XP_022953011.1 (uncharacterized protein LOC111455524 [Cucurbita moschata])

HSP 1 Score: 483.8 bits (1244), Expect = 1.1e-132
Identity = 263/300 (87.67%), Postives = 263/300 (87.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. NCBI nr
Match: KAG7033363.1 (frr [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 480.3 bits (1235), Expect = 1.2e-131
Identity = 262/300 (87.33%), Postives = 262/300 (87.33%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNFLLLRNFANPSRNFSFFV DLCNPWTSEMPGAFALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. NCBI nr
Match: KAG6602677.1 (hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 477.2 bits (1227), Expect = 1.0e-130
Identity = 261/300 (87.00%), Postives = 261/300 (87.00%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNFLLLRNFANPSRNFSFFV DLCNPWTSEMPGAFALP ADFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGAFALPSADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. NCBI nr
Match: XP_023544000.1 (uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 474.9 bits (1221), Expect = 5.0e-130
Identity = 260/300 (86.67%), Postives = 260/300 (86.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSFSYRNFLLLRNFANPSRN SFFV DLCN WTSEMPGAFALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFSYRNFLLLRNFANPSRNLSFFVNDLCNSWTSEMPGAFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. NCBI nr
Match: XP_022990977.1 (uncharacterized protein LOC111487708 [Cucurbita maxima])

HSP 1 Score: 473.4 bits (1217), Expect = 1.5e-129
Identity = 258/300 (86.00%), Postives = 260/300 (86.67%), Query Frame = 0


Query: 1   MAMFLKRSFSYRNFLLLRNFANPSRNFSFFVYDLCNPWTSEMPGAFALPPADFIRESRRG 60
           MAMFLKRSF YR+FLLLRNFANPSRNFSFFV DLCNPWTSEMPG FALPPADFIRESRRG
Sbjct: 1   MAMFLKRSFFYRSFLLLRNFANPSRNFSFFVNDLCNPWTSEMPGVFALPPADFIRESRRG 60

Query: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHI 120
           FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAI+ALSGELSKLRTGRASSGMLDHI
Sbjct: 61  FAKGRKSNESSTSMAEALPDIRPTIKANASSQMEAAIAALSGELSKLRTGRASSGMLDHI 120

Query: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180
           IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA
Sbjct: 121 IVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIA 180

Query: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKS 240
           VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK                          
Sbjct: 181 VIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQK-------------------------- 240

Query: 241 PLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 300
                      AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG
Sbjct: 241 -----------AMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEITGG 263

[Close]

BLAST of CmoCh04G030870 vs. TAIR 10
Match: AT3G01800.1 (Ribosome recycling factor )

HSP 1 Score: 292.0 bits (746), Expect = 5.6e-79
Identity = 174/305 (57.05%), Postives = 211/305 (69.18%), Query Frame = 0


Query: 1   MAMFLKRSFSYRN---FLLLRNFANPSRNFSFFVYDLCNPWTSEMPG---AFALPPADFI 60
           MAMF++R+ S RN   FL   +    SR+FSF    + +P    M G    F L   DF+
Sbjct: 2   MAMFVRRALSSRNAIGFLRRSSVVVQSRDFSF----ISSPNLMMMGGRDLQFDLSMPDFL 61

Query: 61  RESRRGFAKGRKS-NESSTSMAEALPDIRPTIKANASSQMEAAISALSGELSKLRTGRAS 120
           R+SRRGFAKG+KS ++S T M +A PDI PT+KA ASSQMEAAI ALS +L+KLRTGRA+
Sbjct: 62  RDSRRGFAKGKKSKDDSGTGMVDAAPDIGPTVKAAASSQMEAAIDALSRDLTKLRTGRAA 121

Query: 121 SGMLDHIIVEISGVRMPLNQIAAVSVLDSKTLSINPYDPNTLKNLESAIVSSPLGLAPRV 180
            GMLDHI+VE  GV+MPLN +A VSVLD KTLS+NPYDP+T+K LE AIV+SPLGL P++
Sbjct: 122 PGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAIVASPLGLNPKL 181

Query: 181 DGERLIAVIPPLTKEHIQAMCKLVTKCCEDSRQSIRRARQKCGKLNSCRNVRISIVIWTN 240
           DG+RL+A IP LTKEHIQAMCK+VTK  E  +QSIRRARQK                   
Sbjct: 182 DGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQK------------------- 241

Query: 241 SPLNRKSPLLLNPVPFPIAMDTVKKMSSSYPKDDMKRLEKEVDELTKKFIKSAEDLCKAK 299
                             A+DT+KK  SS PKD++KRLEKEVDELTKKF+KSAED+CK+K
Sbjct: 242 ------------------ALDTIKKAGSSLPKDEVKRLEKEVDELTKKFVKSAEDMCKSK 265

[Close]

BLAST of CmoCh04G030870 vs. TAIR 10
Match: AT3G63190.1 (ribosome recycling factor, chloroplast precursor )

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-18
Identity = 64/216 (29.63%), Postives = 107/216 (49.54%), Query Frame = 0


Query: 82  RPTIKANASSQMEAAISALSGELSKLRTGRASSGMLDHIIVEISGVRMPLNQIAAVSVLD 141
           +  I+ +  S+ME  I  L    + +RTGR+++ MLD I VE  G  + L  IA +S  D
Sbjct: 92  KSAIETDVKSKMEKTIETLRTSFNSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPD 151

Query: 142 SKTLSINPYDPNTLKNLESAIVSSPLGLAPRVDGERLIAVIPPLTKEHIQAMCKLVTKCC 201
             +L + PYD ++LK +E AIV+S LG+ P  DG+ +   +PPLT +  + + K+V K  
Sbjct: 152 GSSLLLQPYDKSSLKAIEKAIVNSDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQS 211

Query: 202 EDSRQSIRRARQKCGKLNSCRNVRISIVIWTNSPLNRKSPLLLNPVPFPIAMDTVKKMSS 261
           E+ + ++R  R+   K                                   ++  KK+S 
Sbjct: 212 EEGKVALRNIRRDALKSYD-------------------------------KLEKEKKLS- 271

Query: 262 SYPKDDMKRLEKEVDELTKKFIKSAEDLCKAKEKEI 298
              +D++K L  ++ +L   ++K  E+L K KEKE+
Sbjct: 272 ---EDNVKDLSSDLQKLIDVYMKKIEELYKQKEKEL 272

The following BLAST results are available for this feature:

BLAST of CmoCh04G030870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5WFT1	1.6e-22	32.09	Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) OX=66692 GN=frr P...	[more]
Q9KA66	2.7e-22	33.33	Ribosome-recycling factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 1819...	[more]
B8DSA1	4.7e-22	32.41	Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki...	[more]
Q313G7	8.0e-22	33.33	Ribosome-recycling factor OS=Desulfovibrio alaskensis (strain ATCC BAA 1058 / DS...	[more]
Q5L0J9	1.4e-21	31.75	Ribosome-recycling factor OS=Geobacillus kaustophilus (strain HTA426) OX=235909 ...	[more]

BLAST of CmoCh04G030870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLU1	5.2e-133	87.67	Ribosome-recycling factor, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JKE4	7.0e-130	86.00	Ribosome-recycling factor, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1BWU9	8.9e-117	79.00	Ribosome-recycling factor, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3DLY3	3.7e-115	77.33	Ribosome-recycling factor, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B2S9	3.7e-115	77.33	Ribosome-recycling factor, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485499...	[more]

BLAST of CmoCh04G030870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022953011.1	1.1e-132	87.67	uncharacterized protein LOC111455524 [Cucurbita moschata]	[more]
KAG7033363.1	1.2e-131	87.33	frr [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6602677.1	1.0e-130	87.00	hypothetical protein SDJN03_07910, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023544000.1	5.0e-130	86.67	uncharacterized protein LOC111803704 [Cucurbita pepo subsp. pepo]	[more]
XP_022990977.1	1.5e-129	86.00	uncharacterized protein LOC111487708 [Cucurbita maxima]	[more]

BLAST of CmoCh04G030870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01800.1	5.6e-79	57.05	Ribosome recycling factor	[more]
AT3G63190.1	1.9e-18	29.63	ribosome recycling factor, chloroplast precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 268..288
None	No IPR available	GENE3D	3.30.1360.40		coord: 110..189 e-value: 3.1E-24 score: 86.5
None	No IPR available	PANTHER	PTHR20982:SF12	OSJNBA0076N16.8 PROTEIN	coord: 1..299
IPR023584	Ribosome recycling factor domain	PFAM	PF01765	RRF	coord: 101..215 e-value: 1.5E-37 score: 129.1 coord: 252..297 e-value: 3.1E-8 score: 33.7
IPR036191	RRF superfamily	GENE3D	1.10.132.20		coord: 250..299 e-value: 7.4E-11 score: 44.1
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 85..216
IPR036191	RRF superfamily	SUPERFAMILY	55194	Ribosome recycling factor, RRF	coord: 252..298
IPR002661	Ribosome recycling factor	PANTHER	PTHR20982	RIBOSOME RECYCLING FACTOR	coord: 1..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030870.1	CmoCh04G030870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0043023	ribosomal large subunit binding