CmoCh04G030430 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G030430
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA type zinc finger transcription factor family protein
Location	Cmo_Chr04: 21322807 .. 21324757 (+)
RNA-Seq Expression	CmoCh04G030430
Synteny	CmoCh04G030430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCACTGGAACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTATCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCAGCCATTGCAAAGGAACTCTAAAGGTATTACTCTGTGTTCTTTGAGCTGGATTCTGATCCTTAACATTGCTAATGCGCCTACAAACCAAAGGGTTAGGATATATTTGTTCCTTTATATGTATTTCATAAGCTCTGATGCATGTCAATAATTGAGAACTAAGCTCAACAGCTTCAGTTGAAACTCAACAGCTGTTGTGTATATGTTCTTTTGAAGTTTTCCATCTGATGATGTCTATCACAAGTAAACACAAACTAGATCAAGGGTTCCAAAGTATGGTTAGAATTCGGTGCATGGTGTTTAGTTGTGAGATCCCACATCGGTTGTTGGTTGGTGAGGAGAACGAACATTCTTTAGAAGGGTGTGGAAACCTCTCTCTATAGACCATTTTAAAAATGGGAAACCCGAAAGGGAAAGTCTATAGATAGCGGTGAGCTTGGCCTGTTACAAGTGGTATTAGAGCTAGATAACGGGCGATGTGCCAGTGAAGAGGTTGAGCTTCGAAAGGGAGTGGATACCAGTAAGGATGATGGGTCTTGAAGGGGGGTGGATTGAGGGGTCCTACATCGATCGGAGAAGGGAACGAGTGCTAGTGAGGGTGCTGAGCCCTGAAGGGGGGTGGATTGTAAGATCTCGCATCAGTTGGAGAACAAAACATAAGAGTGTGGAAACCTCTCTCCTAGTAGCTTCAAGGGGAAGCCCGAAAGGGAAACTGCAAAGAGCAATATCTACTAGCAGTGGACTTGGACCGTAGCTAAGCAAAATTTTTTATGTTTTGAAAAGTGGAACTTTACCTACTGTATTTTAACCTTGTTCTCTGTTTTCCTTCAGCTGAGCAATTATTGTTCAATGGAAGGTGTTCTATATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACGTATGTTCTTTATCTTCTTTCACTTAACTTTTATGTTTCACTTCCCAAAAGTTTTGGTTTCACATGTTTAATGGTTCTTGAGTTTTATTTCCAACAGCTGCAAAGTCAGCTGAGAAGACTCCAGAGCTGGTAATTTCCTGTGGTAATCACTTGTAATTTGTTCTTGATAAGATAAAATTATGCTGATTCTTGTGACCACTTCACTGGTTTCAGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAAGCACTTGGTGAGAAGCTCACAAACCATTTATTATGAACAAAAGAGCACTTAGTACTCACAATACTTGCAGGTAACAGTGGAGAATCAGTGCTATCATAAGTCGTGTTTTAAGTGCTCTCATGGAGGGTGTGCTCTTTCCCCATCAAATTATGCAGCCTTAGAGGGTATTCTGTATTGCAAGCATCACTTTTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACTTGATCAAGTGTGCATCCATGAAGCGTAATGCTGCCTCGGTTCCTGAAGCTTGAAAGTTCGAATTCTCATATCATCATCTCGGACCTAACTCTCTGTTTTAACTTTAAATTTTCTGGTTTCGAGATGGGAAAAAAGGAAAAGGAAAAGATTTTTTTTTTATTTATTTTTTTTATGTATTTACCATTGTTTCGGCTCGTGTGTTTATTTGAGCAAATTGTTGCATTTGATCCATATTTGAGGTGCAAACCTTGTATAAGATTTGCAGGACTTGCATATTTGCATGTTTGATCATTATGCGTTGTGTTTTCTTTTGATCTTGCTCTGACCCTTTCTTCACCTTAGGAAGACCATAGTTCTATAAAAAAAGAACATCCCTA

mRNA sequence

ATGTCTTTCACTGGAACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTATCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCAGCCATTGCAAAGGAACTCTAAAGCTGAGCAATTATTGTTCAATGGAAGGTGTTCTATATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACCTGCAAAGTCAGCTGAGAAGACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAACAGTGGAGAATCAGTGCTATCATAAGTCGTGTTTTAAGTGCTCTCATGGAGGGTGTGCTCTTTCCCCATCAAATTATGCAGCCTTAGAGGGTATTCTGTATTGCAAGCATCACTTTTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACTTGATCAAGTGTGCATCCATGAAGCGTAATGCTGCCTCGGTTCCTGAAGCTTGAAAGTTCGAATTCTCATATCATCATCTCGGACCTAACTCTCTGTTTTAACTTTAAATTTTCTGGTTTCGAGATGGGAAAAAAGGAAAAGGAAAAGATTTTTTTTTTATTTATTTTTTTTATGTATTTACCATTGTTTCGGCTCGTGTGTTTATTTGAGCAAATTGTTGCATTTGATCCATATTTGAGGTGCAAACCTTGTATAAGATTTGCAGGACTTGCATATTTGCATGTTTGATCATTATGCGTTGTGTTTTCTTTTGATCTTGCTCTGACCCTTTCTTCACCTTAGGAAGACCATAGTTCTATAAAAAAAGAACATCCCTA

Coding sequence (CDS)

ATGTCTTTCACTGGAACACAACAAAAGTGCAAGGCCTGTGAGAAGACTGTCTATCCTGTGGAGCAGCTCTCTGCTGATGGAGTTTCCTACCATAAGTCTTGCTTCAAATGCAGCCATTGCAAAGGAACTCTAAAGCTGAGCAATTATTGTTCAATGGAAGGTGTTCTATATTGTAAGCCTCATTTTGAGCAGCTCTTCAAAGAGACAGGCAACTTCAACAAGAACTTCCAATCACCTGCAAAGTCAGCTGAGAAGACTCCAGAGCTGACAAGGTCACCTAGCAAAGCTGCTGGCATGTTTTCTGGTACTCAAGACAAATGTGCTACTTGTGGTAAAACTGTTTATCCACTGGAGAAGGTAACAGTGGAGAATCAGTGCTATCATAAGTCGTGTTTTAAGTGCTCTCATGGAGGGTGTGCTCTTTCCCCATCAAATTATGCAGCCTTAGAGGGTATTCTGTATTGCAAGCATCACTTTTCTCAGCTTTTCAAGGAAAAGGGAAGCTACAACCACTTGATCAAGTGTGCATCCATGAAGCGTAATGCTGCCTCGGTTCCTGAAGCTTGA

Protein sequence

MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKPHFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKVTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKRNAASVPEA

Homology

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BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.0e-91
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

[Close]

BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 3.3e-90
Identity = 153/190 (80.53%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKC+ACEKTVYPVE LSADG+SYHK+CFKCSHCK  L+LSNY SMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKETGNFNKNFQSPAK--SAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLE 120
           HFEQLFKE+G+F+KNFQSPAK  + + TPEL R+PS+ AGMFSGTQDKCATC KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASM 180
           KVTVE+QCYHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRNAASVPEA 189
           KR  A+   A
Sbjct: 181 KRATAAATAA 190

[Close]

BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 7.6e-71
Identity = 116/183 (63.39%), Postives = 153/183 (83.61%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGT  KC  C+KTVY V+ LS +G+ YHKSCF+C+HCKGTL++SNY SM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKE+GNF+KNFQ P K+  + PELTR+PSK + +F GTQDKCA C KTVYPLEK+
Sbjct: 61  HFEQLFKESGNFSKNFQ-PGKT--EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKI 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
            +E +C+HK+CF+C+HGGC L+ S+YA+L+ +LYC+HHF+QLF EKG+Y H+++ A+ +R
Sbjct: 121 QMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRR 180

Query: 181 NAA 184
            A+
Sbjct: 181 TAS 180

[Close]

BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.0e-70
Identity = 120/184 (65.22%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGT  KCKAC+KTVY ++ L+ +G +YHKSCF+C+HCKGTL +SNY SM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKE+GN++KNFQ+  K+ +    LTR+PSK +  FSGTQDKCATC KTVYPLEKV
Sbjct: 61  HFEQLFKESGNYSKNFQA-GKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKV 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
           T+E + YHK+CF+C+H GC L+ S+YA+L G+LYCK HF+QLF EKGSYNH+ + A+  R
Sbjct: 121 TMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHR 180

Query: 181 NAAS 185
            +AS
Sbjct: 181 RSAS 183

[Close]

BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.1e-69
Identity = 119/174 (68.39%), Postives = 140/174 (80.46%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQ KC AC+KTV+ ++ L+ADGV YHK+CFKCSHCKG L + +Y SM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKETG+F+K F    +S +K  EL R+PSK    FSGTQDKCA C KTVYPLEK+
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK--ELARAPSKICSAFSGTQDKCAACQKTVYPLEKL 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK 175
           T+E + YHKSCFKCSHGGC L+ S+YAAL G+LYCK HF QLF EKGSYNH+ K
Sbjct: 121 TLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKK 172

[Close]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL
Match: A0A6J1JU67 (LIM domain-containing protein WLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC111487536 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.6e-108
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
           TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR
Sbjct: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180

Query: 181 NAASVPEA 189
           NAASVPEA
Sbjct: 181 NAASVPEA 188

[Close]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL
Match: A0A6J1HDS7 (LIM domain-containing protein WLIM2b-like OS=Cucurbita moschata OX=3662 GN=LOC111461869 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.6e-108
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
           TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR
Sbjct: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180

Query: 181 NAASVPEA 189
           NAASVPEA
Sbjct: 181 NAASVPEA 188

[Close]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL
Match: A0A1S3B3E4 (LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R+AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL
Match: A0A0A0KAA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R+AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL
Match: A0A6J1K140 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.2e-100
Identity = 178/189 (94.18%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R AASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. NCBI nr
Match: XP_022961352.1 (LIM domain-containing protein WLIM2b-like [Cucurbita moschata] >XP_022961353.1 LIM domain-containing protein WLIM2b-like [Cucurbita moschata] >XP_022961354.1 LIM domain-containing protein WLIM2b-like [Cucurbita moschata] >XP_022990746.1 LIM domain-containing protein WLIM2b-like [Cucurbita maxima] >XP_022990747.1 LIM domain-containing protein WLIM2b-like [Cucurbita maxima] >XP_022990748.1 LIM domain-containing protein WLIM2b-like [Cucurbita maxima] >XP_022990749.1 LIM domain-containing protein WLIM2b-like [Cucurbita maxima] >KAG6602629.1 LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033313.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 401.7 bits (1031), Expect = 3.4e-108
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
           TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR
Sbjct: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180

Query: 181 NAASVPEA 189
           NAASVPEA
Sbjct: 181 NAASVPEA 188

[Close]

BLAST of CmoCh04G030430 vs. NCBI nr
Match: XP_023517743.1 (LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_023517751.1 LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 3.2e-106
Identity = 185/188 (98.40%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEKV 120
           HFEQLFKETGNFNKNFQSPAKSAEKTPELT+S SKAAGMFSGTQDKCATC KTVYPLEKV
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKTPELTKSSSKAAGMFSGTQDKCATCAKTVYPLEKV 120

Query: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180
           TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR
Sbjct: 121 TVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMKR 180

Query: 181 NAASVPEA 189
           NAASVPEA
Sbjct: 181 NAASVPEA 188

[Close]

BLAST of CmoCh04G030430 vs. NCBI nr
Match: XP_038884117.1 (LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM domain-containing protein WLIM2b [Benincasa hispida])

HSP 1 Score: 378.6 bits (971), Expect = 3.1e-101
Identity = 180/189 (95.24%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVYPVEQLSADG+SYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYPVEQLSADGISYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGCA+SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCAISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R+AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. NCBI nr
Match: XP_004138434.1 (LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_008441431.1 PREDICTED: LIM domain-containing protein WLIM2b [Cucumis melo] >XP_011656401.1 LIM domain-containing protein WLIM2b [Cucumis sativus] >KGN45769.1 hypothetical protein Csa_005194 [Cucumis sativus])

HSP 1 Score: 377.5 bits (968), Expect = 6.8e-101
Identity = 181/189 (95.77%), Postives = 183/189 (96.83%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKETGNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKETGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R+AA VPEA
Sbjct: 181 RSAAPVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. NCBI nr
Match: XP_022939310.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939312.1 LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022993072.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022993073.1 LIM domain-containing protein WLIM2b [Cucurbita maxima] >KAG7015999.1 LIM domain-containing protein WLIM2b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 178/189 (94.18%), Postives = 182/189 (96.30%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSF GTQQKCKACEKTVYPVEQLS DGVSYHKSCFKCSHCKGTLKLSNY SMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVEQLSVDGVSYHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+GNFNKNFQSPAKSAEK TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK
Sbjct: 61  HFEQLFKESGNFNKNFQSPAKSAEKLTPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC++SPSNYAALEGILYCKHHFSQLFKEKGSYNHLIK ASMK
Sbjct: 121 VTVESQSYHKSCFKCSHGGCSISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RNAASVPEA 189
           R AASVPEA
Sbjct: 181 RPAASVPEA 189

[Close]

BLAST of CmoCh04G030430 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-92
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

[Close]

BLAST of CmoCh04G030430 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-92
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

[Close]

BLAST of CmoCh04G030430 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-92
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

[Close]

BLAST of CmoCh04G030430 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-92
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

[Close]

BLAST of CmoCh04G030430 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 335.9 bits (860), Expect = 2.1e-92
Identity = 157/189 (83.07%), Postives = 173/189 (91.53%), Query Frame = 0


Query: 1   MSFTGTQQKCKACEKTVYPVEQLSADGVSYHKSCFKCSHCKGTLKLSNYCSMEGVLYCKP 60
           MSFTGTQQKCKACEKTVY VE LSADGV YHKSCFKC+HCK  L+LS+Y SMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKETGNFNKNFQSPAKSAEK-TPELTRSPSKAAGMFSGTQDKCATCGKTVYPLEK 120
           HFEQLFKE+G+FNKNFQSPAKSA+K TPELTR+PS+ AG FSGTQ+KCATC KTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVENQCYHKSCFKCSHGGCALSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKCASMK 180
           VTVE+Q YHKSCFKCSHGGC +SPSNYAALEGILYCKHHF+QLFKEKGSYNHLIK AS+K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RNAASVPEA 189
           R+AA+   A
Sbjct: 181 RSAAAAVAA 189

The following BLAST results are available for this feature:

BLAST of CmoCh04G030430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	3.0e-91	83.07	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	3.3e-90	80.53	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
Q1ECF5	7.6e-71	63.39	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
O80839	1.0e-70	65.22	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	7.1e-69	68.39	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of CmoCh04G030430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JU67	1.6e-108	100.00	LIM domain-containing protein WLIM2b-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1HDS7	1.6e-108	100.00	LIM domain-containing protein WLIM2b-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A1S3B3E4	3.3e-101	95.77	LIM domain-containing protein WLIM2b OS=Cucumis melo OX=3656 GN=LOC103485550 PE=...	[more]
A0A0A0KAA4	3.3e-101	95.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G009480 PE=4 SV=1	[more]
A0A6J1K140	6.2e-100	94.18	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111489197...	[more]

BLAST of CmoCh04G030430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961352.1	3.4e-108	100.00	LIM domain-containing protein WLIM2b-like [Cucurbita moschata] >XP_022961353.1 L...	[more]
XP_023517743.1	3.2e-106	98.40	LIM domain-containing protein WLIM2b-like [Cucurbita pepo subsp. pepo] >XP_02351...	[more]
XP_038884117.1	3.1e-101	95.24	LIM domain-containing protein WLIM2b [Benincasa hispida] >XP_038884118.1 LIM dom...	[more]
XP_004138434.1	6.8e-101	95.77	LIM domain-containing protein WLIM2b [Cucumis sativus] >XP_008441430.1 PREDICTED...	[more]
XP_022939310.1	1.3e-99	94.18	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022939311.1 LIM do...	[more]

BLAST of CmoCh04G030430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	2.1e-92	83.07	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	2.1e-92	83.07	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	2.1e-92	83.07	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	2.1e-92	83.07	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	2.1e-92	83.07	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 106..158 e-value: 6.7E-13 score: 58.9 coord: 9..61 e-value: 6.0E-13 score: 59.0
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 107..162 e-value: 3.7E-11 score: 43.1 coord: 10..65 e-value: 1.7E-11 score: 44.2
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 105..165 score: 12.6523
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.573
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 101..171 e-value: 5.1E-20 score: 73.4 coord: 4..74 e-value: 1.6E-20 score: 75.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..101
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..188
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..188
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 1.10423E-39 score: 127.581
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 99..132
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 133..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030430.1	CmoCh04G030430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding