CmoCh04G030380 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G030380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 21300816 .. 21306366 (-)
RNA-Seq ExpressionCmoCh04G030380
SyntenyCmoCh04G030380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCCCAGAGGCCTTTTTGAATTGGGTACCGCTTCCGTTTCCAGTTCGGATATTGGTGGACCATGGAAAGTTCTTGGTAGCGTAGTGAAGCAAACGACGTCGTTTGTTCGATTCTGCACGATTTTGTCGTCTTTGCATTGATTCATTGGGCGGGGGTTCGGATCCAGGGGATCTCCTTGGAATCAGTGAGGAGTTAATTATTGATGCTGGAGGATAGGAAATCCAGTTCAGACTGGCTGTTCGAATCGGAATTTCATTATTTTCATAACTCAGCCTCAGGTAATTTCATTCCGTCTTCCTTTTTACCATTTGATTCTCTTGTTAATTGCATTTAGTGATCGTTTGAAATTGATTGTAGAAGCACGAACAAATTGCAATTCATACGAAACATCAATTTCAACCTAAATCATCGGATTCTCTTAGTTGAGGTTAATGTATGTAAAAACAAAATTGTTTCCTGGAAATAAATTTCAGAGAAATGTTCGTGATTTTGCTGGTGTTTTGGTTGTAATGGTTCGTGATTTACGCTTTAATTTCCAGGTTCTATGATACGTATAATCAATTAGAGGATGTTGGATTATCTATTAGTTTGGGAAGTGTTTTGACTGATGTGAAAATGGTATTAGTTGATCAAGAACGTTGGCTTTCTTGACTCTGCATTTTGAAATGCATACTGTGGAAGAGAGACAATAAAGATGGATTCAGTTTACTGAACAGAAGATGAGGAGGAGCTTCATTTTAGTTAAGAAACCAATTTCCATTGCTTTTATGGTTCTATCTCTCTGTAGCATACTTATTGTACTGATCACAACACTCAGGCTTCCAGAGCTAACTGTAGGAGTAAAGGCAGTCAATCACCAAACTTCAATTATTAGAATGGTTCCTAAAGATAAGAAGTTCGGCAAGTTTGGGGAAATGATGACCGAAATTATATTGGAGAGAGGAATGAAGCATTCCTTATAAGGGTGTGGGAAACCTCCCCTTAGTAAATCCGTTTTAAAACCTTGAGGGGAAGCTAAAAAAAGAAAGCCCAAAGAAGATAATATCTGCTAGCGGTGGGCTTGGGCTATTACACTGGACAACTGAGAATTTGAACGACACATATGCAGTGCTTTCACGTATATTAGGTTTCTCTGCTGCTCCTCGAACTATTTATTTGACTTCTGTTGAGTACATTTCTAAGGACAGAGATGGTATGCTGATTGTTAACCTTGTGAGGTCTGAAATGGTGGATATAAAGGAGGAGGAGGAGGAGGTTGTTGTGCATATAATGGATGGTGTTGTAATGGATGCTGGGTTTGAGCCGTCAGTAAAACGTTCTTGTTACACTGTGTATAGCAAAACTATATCCTTTTCCATTTGGCTCTGCTGTAGAAATAGAATGGCATCCCAAACTCATCTCTGTTCCATTGACTCAACCCACAAGTCAATTTCATCTTGATGTCATTGAGTTTTATATGTTCTCTTTTGATCTCAAGTTTCCTTCTAGATTTCTGCTTATTCTCCCAGCTGTAAACACACTCCTTCTACCTTTTAGTTGAGAATGTTTTCAATGGTTTTAAGGCTTATATGATAAATGTTAGATCATCAGTGCACATAGAAGTGTAATATCGTATATTTTCCTAGCAATCCTTTTGCATGTAGAATAGAAGGATGGAAATTTTAGTGAGAATTGGAAAGGAAGATGTTGTAATTGTGAGATCTCACGATCTCACCTTGGTTGGGGAGGAGAACGAAACACTCTTTATAAGGATGTGGAAACCTTTCCCTACAGACACGTTTTAAAGACTTGTGAGGAATCTCCAAAGGAAAAACCTAAAGAGACCAATATTTGTTAGCGGTGAACTTAGGCCGTTACAGTAATGATGAGGTTTAATTACTGCTAGAAAAAGATCAACCATATGGTTGAGCTAACCAATAAGATAAGCTTAACTCTCTTTCTTAGTAAACTTGAAAACTATGTGAGCCTGAGGCAATATTGAAATGGGGAATGACTTGAATTGAATTGAATTGAATAACAAGGGAAGCAAAACCAAGGAATGACCAAAATAGCTTTTATAATTCCCTTTTTATGAATTCCGAAGCATTGAATCCACACATTGGTTTCTCGTGATAAAAGCCCGTTTGAATTTCCCAATTTCCAACATTCACTGATTAACAATAAATCCAACGCCACTCTCATTCATCATCTACGTGTTTCGAGCATGCACTTGAGAATGTCCAAACCCTTTTCCATTTCCCATAAAAAAGGAAAAATTCAAACTAATTAAAATCCTAAGCAGCTGCTACACAACAGTCTTACCATATTTTTTTCAACAGCCATCGATTTTTACAGAAAGCTTAAACGAAGATCCAATGGCGGATGTTCCATTTTGGTCCCTATTTTGTAGGTGAAAGCTGTTGCCTCCTCGTACTGTTTCCCATTTACTCTGAACTGATGATCATTATCTCCTTCTGTTTCGCCAATGGAGTTTAATGGAAAAAGTTGAAGCGTTTTCATCATTCTTTCTGGCTCCAACTCCATTGTACCACCCTTATTTGTTGTGGACTGATCATCTGCAAAATCTGCACAAACCCAGAACAAAAAACAGTGCCTTCAATCAAAAACACTCCAACTTTGACATAAACTCATAACGACATGATACTTATCTAGAGGAAGAACAATTAGAAACTTCATGACCTATTCGCCATTTCTTAACAAACATGATACTCAATGAGTAGCTACAAAATAAAGTTGGAAACTTATTCAAAATCTCTGTCTTCTGATATAGTCTTTTTTGTTGTTATGTCAGACTCTGATTGACAAAAAATTGGAAACTTTTGTGTTATTTTAGAGACAGAAATTGATAAAAGGAAATGAGAAACAAGGAACATACAGTTAGAACAAGGTGGAAGAATGAAGTGTTGTTGTTGTTGATGATGATGATGATGATGAGTGTGATCAAGAGAAATAGATACTTTGCGACGTTTTTGTCTTTCACGAGCTTTATGATTCTGAAACCAGTAGAATACATTTTTGCTCTCGATCTTGCCGTAAAAGCTGAGCTGATGAGATATTTTCTGAATCTGATCGCTACTCGGAGTTCTAAGCCCTGACCTGAACAACTCTGTCAGCACTTTTACTTGCTCGGCAGTTGGATTCCATCTCCCACATTTACTGCTCATACTCCCTTTTCCGGCCACTCCACCACCGTCTCCGCCGCCTCCTGCCGGTTTTACATAAAATCTTGAAGAAATCCCTTCGTCCATATTCATATTATTCTTCATTCAACACTGCGTGTGTTCTGATCTGTTAACAGAGATGATCAACTGAAACTTCTTCGCTCAGATGGAAAGCTTGTGCAAGTCAGAAAAGTACACCCTGCTCCATATATATATATAGAATATTTATATGCACACTAGTTAGTGAAAGTTCAAGGAAAAATCCCATATTCCAATAGCTTTTTTACTAATTATTTGCAATTCACGTTAGCAGTGTCAAAGAATGAGCAGCATGAAACATTAATTGGAACAAATTTTTAGTAATTTTGTATTATCTAACAATAGTGGACTCCATGTTATTTTTTAATTATAAATATCGGTTATCAGCATAAATGTCAATGGTTCGATCCCTTACCTTCATAGAAGTATCATACTAACATTATATGGGAAATGTTCCCTCGCCAACATATCTCTAACTTACTTTCTCGAAAGATTAAGTAGATCAAGAAAATCAACAGAAGTTAGGCAAACATAGGATTAGGGGTTCGTTCTTATATTATAATATTTTAAAGAAAACTCATTTTGAGTTCATAATGGTTACAGTACATACATACAGTATAAAGAAAGCAGAAAAGAGGGCTCCTTTTTGTTCAGTCCTAGGAGGCTATATATATATATATATATATATGTGTATATATCTATGTTGAGATGATGGAAATAACTTATGTGATGATAATGTTTTCTTTGATTTTAGGGAAAGAAAAGATTGGATAGAAGTTGAAGAGTGATTTGTTGTTAAAGAAATTGAGCCTGGTTTTTTGTGCAGAGAGAAAGGAAAACTAGGAATATGGAGGGACATGCGCAAAAGCTGCCACTGGCGAACATCTTCGGTCGCCGAGCAGACAAAGATGCAAGTTTCATTGATTCTCAAATATAATATATTCAGGTTCTGTGTCTCATGGATCAATGTTCTATTTTTCACATATTTGAATGCATTTTTGTTTTATATGGGTTTCGTGTTTCTCAGTAAAGCATGCACTTACCTATGTCCAAAATTAAAAAAAAAAAAAAAAAATCACATTTTAATAATATCTTAACAATAACTATTTAGTTTTATTCTTCGTTAAAAACATGGTAGAAACATTAATAGCTTCTTTTTAGGAATGGTAGGGGTATGAAGCAAGTTCGACAACTTGAATTTAAGGAAAGATTTGAAAGGGTAGAGGATTGAGGAAATGTGTAAAGAATAGTCAAAGTTTAGGGATATTGTGTGAATGTGCGTTGGAGGGTTGTGATTAAAAGAGAGTGAGAGAGAAATACTAAGTTGACCAAAGGGATTAAAATTGGACTTTACTTTGTCTGAGGAGCCCCTCGTCTTATTAACTCCAACGACACTTAGCTCTACAAACTTCAAATTTGAAAATGAAAAGGAAACAAAAAGAATGAAGAGAAAGTGGATTCCAGGATGTGACCACACCACTTTCCTAAAACTCCCATTAAATGCCCCTATCTTCTACTTCTTGTCTACACTACACCATACAAAACCCAACAATTTTTTTTTTTTTTTTTTTTAGGGAAATAAAAAACAATTAGTGATTGAGTGGAGAGTGAAGAAGAAGTCATTATTTAAGAAACATGTTATTGTAATTTAAGGAGCAAAAAAAGAAAGTGCAATAAACCCACTATTTATTTCCAGTTTCCTTTAAGGACCATCGCAATCAACCAATCATCAATATCCACGTGTCCACCAACTTTGATGCAACTTATACTATAACATTCATGACAAGTACATAACTAATTACTATCGTAGTTTAAATTACATAACTAATTTCTCTGAGGTTTTATCCGCTGAAATATAAAAAGTAATTAATGGAAGCTGAAAATCGACTAATAGCTTATTGATTTATAATCTAATATCAAGGAACGCTTGTTAAATACAAAAATAACTCACGTGAATCAATGAAAATAAGAATAATAATACAAAAACAATCCATATTTTATTATATACATAATTTCAAAAGGGCTAGAAATGATAAGAATCAAAACCAAACAAAAGACAGTTCTATCCCTTACTGCTTTGTTTCTACCCCTGCCCAAACATGAAGAGAACTCATCTTCTAACCAAAGAGAACTTGAAAACAGAAAGTAAATCATATTGTTACCTTTCAACGAACAATAATATCTGGAGGTAAAAGATGAGAAAGACAGATTTATGGCGACAAAGTATCGAGTATGGGGGGAAAATTGGGTGCCTGGACAATATTCTCTTGATTCTAATAATGGTAGTACAACCCTCATTGTTAAACTAGGCAACATACTCCACAAAGCAGGCAGCAGTATAAGATGA

mRNA sequence

ATGCAGCCCAGAGGCCTTTTTGAATTGGGTACCGCTTCCGTTTCCAGTTCGGATATTGGTGGACCATGGAAAGTTCTTGGAAATCCAGTTCAGACTGGCTGTTCGAATCGGAATTTCATTATTTTCATAACTCAGCCTCAGAGAGAAAGGAAAACTAGGAATATGGAGGGACATGCGCAAAAGCTGCCACTGGCGAACATCTTCGGTCGCCGAGCAGACAAAGATGCAAATGAGAAAGACAGATTTATGGCGACAAAGTATCGAGTATGGGGGGAAAATTGGGTGCCTGGACAATATTCTCTTGATTCTAATAATGGTAGTACAACCCTCATTGTTAAACTAGGCAACATACTCCACAAAGCAGGCAGCAGTATAAGATGA

Coding sequence (CDS)

ATGCAGCCCAGAGGCCTTTTTGAATTGGGTACCGCTTCCGTTTCCAGTTCGGATATTGGTGGACCATGGAAAGTTCTTGGAAATCCAGTTCAGACTGGCTGTTCGAATCGGAATTTCATTATTTTCATAACTCAGCCTCAGAGAGAAAGGAAAACTAGGAATATGGAGGGACATGCGCAAAAGCTGCCACTGGCGAACATCTTCGGTCGCCGAGCAGACAAAGATGCAAATGAGAAAGACAGATTTATGGCGACAAAGTATCGAGTATGGGGGGAAAATTGGGTGCCTGGACAATATTCTCTTGATTCTAATAATGGTAGTACAACCCTCATTGTTAAACTAGGCAACATACTCCACAAAGCAGGCAGCAGTATAAGATGA

Protein sequence

MQPRGLFELGTASVSSSDIGGPWKVLGNPVQTGCSNRNFIIFITQPQRERKTRNMEGHAQKLPLANIFGRRADKDANEKDRFMATKYRVWGENWVPGQYSLDSNNGSTTLIVKLGNILHKAGSSIR
Homology
[Close]
BLAST of CmoCh04G030380 vs. NCBI nr
Match: KAG7033308.1 (hypothetical protein SDJN02_07363, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-20
Identity = 60/95 (63.16%), Postives = 67/95 (70.53%), Query Frame = 0 

Query: 1  MQPRGLFELGTASVSSSDIGGPWKVLGNPVQTGCS----NRNFIIF-------------- 60
          MQPRGLFELGTASVS SDIGGPWKVLG+ V+   S      +F++F              
Sbjct: 1  MQPRGLFELGTASVSGSDIGGPWKVLGSVVKQTTSICSILHDFVVFALIYWAGVRIQGIS 60

Query: 61 ITQPQRERKTRNMEGHAQKLPLANIFGRRADKDAN 78
          +   QRERKTRNMEGHAQKLPLANIFGRRADKDA+
Sbjct: 61 LESLQRERKTRNMEGHAQKLPLANIFGRRADKDAS 95

The following BLAST results are available for this feature:
BLAST of CmoCh04G030380 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030380 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033308.11.0e-2063.16hypothetical protein SDJN02_07363, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh04G030380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030380.1CmoCh04G030380.1mRNA