CmoCh04G030230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G030230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 21226617 .. 21228586 (-)
RNA-Seq Expression	CmoCh04G030230
Synteny	CmoCh04G030230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTGTCATGTAATGTAGTAAGAAATCTTGCTTAGCCTGTAAATCCCCATAAGTTTTTGTTGTGTTTTCTTTTTCAAGGTTATGTTCTGTAAGATATGGTATTTAGCTGCGTGGTTAAGTTCAGGAAGTTATAAGCCAATTATCCTTGTTTTTGCTTGTTCTTTTCTCTTCCTTTTGGCCTGAGTTATAAGCAATTTTGGTTCCCAATATGATAGGAACTTGCGAGGAGGATGAGCAGGTCATATCCAAGCCACATGTGGAAGTGGTAGGGGCTACCTCTCTGCAACTACTTTCGAAGAGGAGACAAAGAAGAAGCAAACAATCCTTAACCATTCCATTTAAACCAACGCTTTCACAGCTTACAGTTCAGGTGTGCCAACTCCACCAACTTTTTAACTGTTCTTGTCTTGCTTTTATTAATCTCCTTCGATTCGTTTATCGAAAGATTTGTTGAACACAAATTTAAAGACTTCGAGAACTAAACTTCAATTAGAATCATATGAAAGAGCTGTAGGCATATCACAAATTTAATTTTTTAACCGTTAACTTTTAGAATAATAATTGATGTCTTAGTCACTAATTTATGCTCGAATTTTTACACATATTGAAGCAAACTTCATCCTCTAGAGAGTAAAATCATGCAAAGCTGAATTGATGATGATAGTTCCCATAGGAGTAGGAAGCCAACGCGGACTTCTAGATGTAGAATTTTGCCAATGATTCTGTCAAGTTCGTGGCTTGTCACATGAGTTTGAATTTCATATTTTCGTACGTGGAAAGAAGTATAAGATAACTGTAACCTTCCCATGACATATAAGCTACTAATACATTTTTTTTTCTCGAAATAAGTTTGTCGTAGCACTATTGTCTGCTAACATTTGCCACTTTTTAATGCATTTTACTACATTCAAATATTTTTGTTAAAACATTCTTCGATCAAAGCTGTCTTAGCTTGGAAATAAAGTGATGTCTCACCCATCAAACTACCCTTAAAAAGAAATGGAGTGACACTCAAAAAAATATCTCTATTTTGTGTCAAACACAAAAAGAGAGAGAGAGGAGAGTAGGCCATTGCTTTCCTTAGCATTTACTTTTCTCACACATAAAGTTTCTAATAATTTCCCAATAAAAATTTCTCCTAAATTACTTTGGGTTTGGACAGATTTAACCTTCTAATTCAGCTTAGATGTTTACTTCTACCAACCTCCCTCTCTTTTAAACTTAGCAATCCTCTTATAATTCTTTCTCAATTCTGTTGGATGATGAAAGTCGCACATCGATTAATTTAGGGAATGATCATGAGTTTTTATAATCAATCCATCAATACTATCTCTATTGGTACGATGCCTTTGAAAAAGTCTATAGCAAAGTCATGAGAGTGTATGCTCAAAGTGAACAATAGCATACCATTGTGGAGAGTCGTGTTCATCTAACATGGTATCAGAGTCATGCACTAAACTTAGTCGTGTCAATAGATGGGTAAATCCTCAAATGTCAAACAAAGGACTCCAGAAGAAAAGGAGTCAAGCCTCCTCGAAGGAGGCATACTTTGTTCGAGGGGAGTTGTTGATATAATCAATTAATACTATCTTCATTGGTATGAGGCCTTTGGGGAAGCCCAAAGCAAAGCCATGAAAACGTATAGACAATATCATACCATTGTGGAGAGTCGTGTTCATCCAACAAATTCTTTGATTGAATAAGATTTTCATTAAAAAAAAAAAAGTTTAATTATATTGGCCATTCGATTTATAGATCATATCCACAAGGAGACCCACGGAGATAGCGAGTATAAGGAAGGGGCAGGAAGGAATCGGGACCCTCCATCTGGAAGGGCCCAACCAGAGATGAGACAGAGTATGGCCGTCAGATCAATGCTCTACAGAGACCTTCATTTCCACGCTTTCACTAACTCAGATTCGAAACCAGCTCAGAACCAACAGAAATTGAAAATTCATAAACTTTGA

mRNA sequence

ATGCAGTGTCATGTTATGTTCTGTAAGATATGGTATTTAGCTGCGTGGTTAAGTTCAGGAAGAACTTGCGAGGAGGATGAGCAGGTCATATCCAAGCCACATGTGGAAGTGGTAGGGGCTACCTCTCTGCAACTACTTTCGAAGAGGAGACAAAGAAGAAGCAAACAATCCTTAACCATTCCATTTAAACCAACGCTTTCACAGCTTACAGTTCAGGAGACCCACGGAGATAGCGAGTATAAGGAAGGGGCAGGAAGGAATCGGGACCCTCCATCTGGAAGGGCCCAACCAGAGATGAGACAGAGTATGGCCGTCAGATCAATGCTCTACAGAGACCTTCATTTCCACGCTTTCACTAACTCAGATTCGAAACCAGCTCAGAACCAACAGAAATTGAAAATTCATAAACTTTGA

Coding sequence (CDS)

ATGCAGTGTCATGTTATGTTCTGTAAGATATGGTATTTAGCTGCGTGGTTAAGTTCAGGAAGAACTTGCGAGGAGGATGAGCAGGTCATATCCAAGCCACATGTGGAAGTGGTAGGGGCTACCTCTCTGCAACTACTTTCGAAGAGGAGACAAAGAAGAAGCAAACAATCCTTAACCATTCCATTTAAACCAACGCTTTCACAGCTTACAGTTCAGGAGACCCACGGAGATAGCGAGTATAAGGAAGGGGCAGGAAGGAATCGGGACCCTCCATCTGGAAGGGCCCAACCAGAGATGAGACAGAGTATGGCCGTCAGATCAATGCTCTACAGAGACCTTCATTTCCACGCTTTCACTAACTCAGATTCGAAACCAGCTCAGAACCAACAGAAATTGAAAATTCATAAACTTTGA

Protein sequence

MQCHVMFCKIWYLAAWLSSGRTCEEDEQVISKPHVEVVGATSLQLLSKRRQRRSKQSLTIPFKPTLSQLTVQETHGDSEYKEGAGRNRDPPSGRAQPEMRQSMAVRSMLYRDLHFHAFTNSDSKPAQNQQKLKIHKL

Homology

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BLAST of CmoCh04G030230 vs. NCBI nr
Match: KAG7033295.1 (Protein SMAX1-LIKE 7, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-18
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 22   TCEEDEQVISKPHVEVVGATSLQLLSKRRQRRSKQSLTIPFKPTLSQLTVQ 73
            TCEEDEQVISKPHVEVVGATSLQLLSKRRQRRSKQSLTIPFKPTLSQLTVQ
Sbjct: 1095 TCEEDEQVISKPHVEVVGATSLQLLSKRRQRRSKQSLTIPFKPTLSQLTVQ 1145

The following BLAST results are available for this feature:

BLAST of CmoCh04G030230 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G030230 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G030230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033295.1	9.0e-18	100.00	Protein SMAX1-LIKE 7, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CmoCh04G030230 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030230.1	CmoCh04G030230.1	mRNA