CmoCh04G030140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G030140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 21172939 .. 21174167 (+)
RNA-Seq ExpressionCmoCh04G030140
SyntenyCmoCh04G030140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACATGAGGTATCTTTCTGTCTTTTAGAATGTATCATCACAAACGCTAGATGAGAGTTTGAAACTTAACTTAGAGAAATGGCTATTGAAGTCTCAACCAATGGGAATTGCTGCTTGGTGTCTCTGAAGCAAGGAAACGGTGTTGCGAAATTCAAGACTATTGTTCTTAGCTTCTCCCATCAGTTTATGCTTCGGTGGTCTATAAACATGGAACTCTCGGAAAGGGTACGTCATTTCAGTCGATGTAGCCATATAAAACAACTTATTTCATGATTGAAAGTAATTTTTCATTCTTATGCCAAGCTTTTAAACCTGTATCTCGCAGGTAGTGTGTTACGAGTTTGGGGGTTAGTCAACCCCACAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTCGTTTTGTAAGTTGAGCAATTTATGGGCGTTTGGGGACAATGTATTATGCATTATGTTAACGAAAAGTAAACAATGTACATAAGAAATTAAAAATATTGATATGAATTGTTGTAAAAAGTTAGGTAGGATCGCGATGGATGAGGGGAGAAGCTTAATGGACTGTTTGTTTGCAGGCTTGTAGCTATTCTCCTTTCTAGGGATATTCTTAACTTGCTCCGGGCGTAGAAAGAAAAAAAAAAGAATCTAGTGTCACTATGAGGTGGGATATTTTCTTACTACTGTTTATACTTAATTGCATTCCAGACTCTCAAATCACTTTAATTACTAGCGATGTAATCTTGAATGAGTAATAATATTTTGTTTTGTTTGAAGAATATAATTTTTGTGGGTTTAATAAATAGGGGCATGGTTGAAGAGGTTGGAGCACTGGAATGTGAAATCAAGGTTTTGTCAAGCAGAGGCGTGAAGGTTTGTGACTTTCTCCGATAACTACTTCGTAATTTCCTTATTAAGATATTTTAGAGAGTAAAAAAGGTTACTTCGAGAAATTTTATTGAGGAGATTTAAAGAATTTGTTAGAGAGAGAACGACCGGTTGGCTAGAGAAAAATAATTTAGACAGTTATTTTAATGAGAAAAAAAGTTGAAGCTTTAGAGGGGGAAATAAAGAAAATATTCTGGGGAGGATATAATTTGGAAAGCAAGATATACAAGAGCGAGAAAGGAAAGGGAGAAAAAATCACATGAAGGGAAACTAAGTCTTAGAGTGAAGGAATATTTATAGTGTTTTATAAAATCATAGGTAAACAATTCTAACTTTTAAAATAGTAG

mRNA sequence

ATGAGACATGAGTCTCAACCAATGGGAATTGCTGCTTGGTTTTATGCTTCGGTGGTCTATAAACATGGAACTCTCGGAAAGGGTAGTGTGTTACGAGTTTGGGGGTTAGTCAACCCCACAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTCGTTTTGCTTGTAGCTATTCTCCTTTCTAGGGATATTCTTAACTTGCTCCGGGCGTAGAAAGAAAAAAAAAAGAATCTAGTGTCACTATGAGGGGCATGGTTGAAGAGGTTGGAGCACTGGAATGTGAAATCAAGGTTTTGTCAAGCAGAGGCGTGAAGGTTTGTGACTTTCTCCGATAACTACTTCGTAATTTCCTTATTAAGATATTTTAGAGAGTAAAAAAGGTTACTTCGAGAAATTTTATTGAGGAGATTTAAAGAATTTGTTAGAGAGAGAACGACCGGTTGGCTAGAGAAAAATAATTTAGACAGTTATTTTAATGAGAAAAAAAGTTGAAGCTTTAGAGGGGGAAATAAAGAAAATATTCTGGGGAGGATATAATTTGGAAAGCAAGATATACAAGAGCGAGAAAGGAAAGGGAGAAAAAATCACATGAAGGGAAACTAAGTCTTAGAGTGAAGGAATATTTATAGTGTTTTATAAAATCATAGGTAAACAATTCTAACTTTTAAAATAGTAG

Coding sequence (CDS)

ATGAGACATGAGTCTCAACCAATGGGAATTGCTGCTTGGTTTTATGCTTCGGTGGTCTATAAACATGGAACTCTCGGAAAGGGTAGTGTGTTACGAGTTTGGGGGTTAGTCAACCCCACAGCATTTGGCAAAAGATGCTTTTTCTCTGCCGTCGTTTTGCTTGTAGCTATTCTCCTTTCTAGGGATATTCTTAACTTGCTCCGGGCGTAG

Protein sequence

MRHESQPMGIAAWFYASVVYKHGTLGKGSVLRVWGLVNPTAFGKRCFFSAVVLLVAILLSRDILNLLRA
Homology
[Close]
BLAST of CmoCh04G030140 vs. NCBI nr
Match: KAG6602604.1 (hypothetical protein SDJN03_07837, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-08
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 32  RVWGLVNPTAFGKRCFFSAVVLLVAILLSRDILNLLRA 70
           RVWGLVNPTA GKRCFFSAVVLL AILLSRDILNLL A
Sbjct: 231 RVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNLLWA 268

[Close]
BLAST of CmoCh04G030140 vs. NCBI nr
Match: KAG7033284.1 (hypothetical protein SDJN02_07339 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-08
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0 

Query: 32  RVWGLVNPTAFGKRCFFSAVVLLVAILLSRDILNLLRA 70
           RVWGLVNPTA GKRCFFSAVVLL AILLSRDILNLL A
Sbjct: 76  RVWGLVNPTALGKRCFFSAVVLLGAILLSRDILNLLWA 113

The following BLAST results are available for this feature:
BLAST of CmoCh04G030140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G030140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602604.17.2e-0892.11hypothetical protein SDJN03_07837, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7033284.17.2e-0892.11hypothetical protein SDJN02_07339 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh04G030140 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030140.1CmoCh04G030140.1mRNA