CmoCh04G030010 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G030010
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioncell wall protein RBR3
LocationCmo_Chr04: 21127037 .. 21127663 (+)
RNA-Seq ExpressionCmoCh04G030010
SyntenyCmoCh04G030010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACTCGAAACTACGACCAAGTCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCACTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCGTCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCAGAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGATGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGCGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

mRNA sequence

ATGCAAACTCGAAACTACGACCAAGTCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCACTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCGTCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCAGAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGATGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGCGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Coding sequence (CDS)

ATGCAAACTCGAAACTACGACCAAGTCTCTCAAAAATCACTCAAAATCAAGCATGAAGATAATAGATTCTTGTCGAGGGTTGTGTCAAAAGACCCTAATTCCGCCGCTAACTCCTCTTTTAGAGTGTATTACGGCGGCGCTGCCGGTGCAATTCCGTTCAGATGGGAGTCCCGTCCCGGCACTCCAAAGCATACTTTCTCAGAAACTTCCATCCCTCCTCTTACGCCGCCGCCGTCTTATTATTCTTCCACTTCACATTCTACCTTCAAGGCCTCTTCCAAACCAACCCTTTTGAGCTCTATTTTCCCCCGGCGAACTTTGTCGTCCTTCTCCGCCTCTTCCTCGTCCTCCTGTTCCTCACCGTCGCCGTTCGTTAGACCGAAATTCTTTAAGCGTCGTCGTCGTCACTCGTTGGATTCTCAGAGCTTGCCGTTGGAGTATAACGACAACGACAACGACGGGGAGGAGGCGATGGGGAGCTCCAATTCTCCGACGTCGACATTGGGGTATGGCGGTTGTTCGGGTAGGGGATCATTTTTGGGAGGTTGCTACCAGTTAGTGAGCGTGAAGAATGCTTTGTTGACCATTGTTGGGCATGGATCTACAACACGAGGTACTGTTAATTAG

Protein sequence

MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN
Homology
BLAST of CmoCh04G030010 vs. ExPASy TrEMBL
Match: A0A6J1HHB7 (uncharacterized protein LOC111462925 OS=Cucurbita moschata OX=3662 GN=LOC111462925 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.2e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

BLAST of CmoCh04G030010 vs. ExPASy TrEMBL
Match: A0A6J1JKP1 (uncharacterized protein LOC111487777 OS=Cucurbita maxima OX=3661 GN=LOC111487777 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 9.3e-97
Identity = 191/209 (91.39%), Postives = 196/209 (93.78%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTRN DQ+SQKSLKIKHEDNR LSR +SK+ NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNDDQISQKSLKIKHEDNRLLSRALSKEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS SHST KASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSASHSTSKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDND----GEEAMGSSNSPTSTLGYGGCSGR 180
           PSPFVRPKFFKRR RHSLD+QSLPLEYN NDND    GEEA+GSSNSPTSTLGYG CSGR
Sbjct: 121 PSPFVRPKFFKRRHRHSLDAQSLPLEYNFNDNDDNNNGEEAVGSSNSPTSTLGYGVCSGR 180

Query: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 206
           GSFLGGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GSFLGGCYQLVSVKNALLTIVGHGSTTRG 209

BLAST of CmoCh04G030010 vs. ExPASy TrEMBL
Match: A0A5A7UC51 (Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G005080 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 154/234 (65.81%), Postives = 173/234 (73.93%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT+NYDQ+SQKS +I   ++RF +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPR------RTLSSFSASS 120
           TPKHTFS+TSIPPLTPPPSY+SS SHST KASSKPTLLSSIFPR      RT  SFS+SS
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYFSS-SHSTSKASSKPTLLSSIFPRLTPRKSRTFPSFSSSS 120

Query: 121 ----------------SSSCSSPSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAM 180
                           SSS SSPSPFVRPKFFK RRRH  D  SLP EY+ +D DG+E +
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFK-RRRHFSDIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS---NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S   NSPTS L + GG S R S  GGCYQLVSVK ALL+IVGHGS +RGT+N
Sbjct: 181 AGSTAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKKALLSIVGHGSASRGTLN 232

BLAST of CmoCh04G030010 vs. ExPASy TrEMBL
Match: A0A1S4E178 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.9e-66
Identity = 154/234 (65.81%), Postives = 173/234 (73.93%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT+NYDQ+SQKS +I   ++RF +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MQTQNYDQISQKSSQITKHEDRFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPR------RTLSSFSASS 120
           TPKHTFS+TSIPPLTPPPSY+SS SHST KASSKPTLLSSIFPR      RT  SFS+SS
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYFSS-SHSTSKASSKPTLLSSIFPRLTPRKSRTFPSFSSSS 120

Query: 121 ----------------SSSCSSPSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAM 180
                           SSS SSPSPFVRPKFFK RRRH  D  SLP EY+ +D DG+E +
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFK-RRRHFSDIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS---NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S   NSPTS L + GG S R S  GGCYQLVSVK ALL+IVGHGS +RGT+N
Sbjct: 181 AGSTAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKKALLSIVGHGSASRGTLN 232

BLAST of CmoCh04G030010 vs. ExPASy TrEMBL
Match: A0A0A0K7T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.5e-66
Identity = 151/233 (64.81%), Postives = 174/233 (74.68%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           M+T++YDQ+SQKS  I   +++F +R +SK+ NS  NSSFRVYYGGA GAIPFRWESRPG
Sbjct: 1   MKTQSYDQISQKSFPITKHEDKFFTRALSKELNSTTNSSFRVYYGGATGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRT-------------- 120
           TPKHTFS+TSIPPLTPPPSY+SS SHST KASSKPTLLSSIFPR T              
Sbjct: 61  TPKHTFSDTSIPPLTPPPSYFSS-SHSTSKASSKPTLLSSIFPRLTPRKSRTSPSFSSSS 120

Query: 121 --------LSSFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAM 180
                   L+S+S+S SSS SSPSPFVRPKFFKRRRR S D  SLP EY+ +D DG+E +
Sbjct: 121 GSSSSSSSLASWSSSFSSSSSSPSPFVRPKFFKRRRRFS-DIPSLPFEYSFDDKDGDEVV 180

Query: 181 GSS--NSPTSTLGY-GGCSGRGSFLGGCYQLVSVKNALLTIVGHGSTTRGTVN 209
             S  NSPTS L + GG S R S  GGCYQLVSVKNALL+IVGHGS +RGT+N
Sbjct: 181 AGSAPNSPTSILCFGGGSSSRASLFGGCYQLVSVKNALLSIVGHGSASRGTLN 231

BLAST of CmoCh04G030010 vs. NCBI nr
Match: XP_022962524.1 (uncharacterized protein LOC111462925 [Cucurbita moschata])

HSP 1 Score: 399.1 bits (1024), Expect = 2.4e-107
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

BLAST of CmoCh04G030010 vs. NCBI nr
Match: KAG6602592.1 (hypothetical protein SDJN03_07825, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.1e-107
Identity = 204/208 (98.08%), Postives = 207/208 (99.52%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQ+SQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 209
           GGCYQLVSVKNALLTIVGHGSTTRGTVN
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 208

BLAST of CmoCh04G030010 vs. NCBI nr
Match: KAG7033270.1 (hypothetical protein SDJN02_07324, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.4 bits (1017), Expect = 1.6e-106
Identity = 203/208 (97.60%), Postives = 206/208 (99.04%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQT NYDQ+SQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTPNYDQISQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDS SLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSHSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 209
           GGCYQLVSVKNALLTIVGHGSTTRGTVN
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRGTVN 208

BLAST of CmoCh04G030010 vs. NCBI nr
Match: XP_023545973.1 (uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 381.3 bits (978), Expect = 5.2e-102
Identity = 195/205 (95.12%), Postives = 201/205 (98.05%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTRNYDQ+SQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHST KASS+PTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTSKASSQPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTRG 206
           GGCYQLVSVKNALLTIVGHGSTTRG
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTRG 205

BLAST of CmoCh04G030010 vs. NCBI nr
Match: XP_023545206.1 (uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 379.0 bits (972), Expect = 2.6e-101
Identity = 194/204 (95.10%), Postives = 200/204 (98.04%), Query Frame = 0

Query: 1   MQTRNYDQVSQKSLKIKHEDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPG 60
           MQTRNYDQ+SQKSL+IKHEDNRFLSR VS + NSAANSSFRVYYGGAAGAIPFRWESRPG
Sbjct: 1   MQTRNYDQISQKSLEIKHEDNRFLSRAVSNEANSAANSSFRVYYGGAAGAIPFRWESRPG 60

Query: 61  TPKHTFSETSIPPLTPPPSYYSSTSHSTFKASSKPTLLSSIFPRRTLSSFSASSSSSCSS 120
           TPKHTFSETSIPPLTPPPSYYSS+SHST KASS+PTLLSSIFPRRTLSSFSASSSSSCSS
Sbjct: 61  TPKHTFSETSIPPLTPPPSYYSSSSHSTSKASSQPTLLSSIFPRRTLSSFSASSSSSCSS 120

Query: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFL 180
           PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEA+GSSNSPTSTLGYGGCSGRGSFL
Sbjct: 121 PSPFVRPKFFKRRRRHSLDSQSLPLEYNDNDNDGEEAVGSSNSPTSTLGYGGCSGRGSFL 180

Query: 181 GGCYQLVSVKNALLTIVGHGSTTR 205
           GGCYQLVSVKNALLTIVGHGSTTR
Sbjct: 181 GGCYQLVSVKNALLTIVGHGSTTR 204

BLAST of CmoCh04G030010 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-18
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 0

Query: 19  EDNRFLSRVVSKDPNSAANSSFRVYYGGAAGAIPFRWESRPGTPKHT-FSET-SIPPLTP 78
           + N  +S  +    +S  NSS R+YY G A ++PF WE+RPGTPKH  FSE+  +PPLTP
Sbjct: 8   DSNGVISSKIIVKESSQVNSSSRIYYYGGA-SVPFLWETRPGTPKHALFSESLRLPPLTP 67

Query: 79  PPSYYSSTSHSTFKASSKPTLLSSIFPRRTLS--------SFSASSSSSCSSPSPFVRPK 138
           PPSYYSS+S S  K S   T+  + F +  LS        S+S++SSSS SS S    P 
Sbjct: 68  PPSYYSSSSSSGNKLSKARTIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSSYSSSSPPS 127

Query: 139 FFKRRRRHSLDSQSLPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFLGGCYQLVS 198
             + R R         ++    ++D EE +  S+SPTSTL Y    G  S +G      S
Sbjct: 128 KVEHRPRKCYSCSRSYVK----EDDEEEIV--SSSPTSTLCYK--RGFSSSMG------S 187

Query: 199 VKNALLTIVGHGSTTR 205
           +K AL +++ HGS+ +
Sbjct: 188 MKRALCSVLSHGSSRK 188

BLAST of CmoCh04G030010 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). )

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-12
Identity = 70/173 (40.46%), Postives = 87/173 (50.29%), Query Frame = 0

Query: 43  YYGGAAGAIPFRWESRPGTPK-HTFSETSIP-PLTPPPSYYSSTSHSTFKASSKPTLLSS 102
           YYGGA  +IPF WESRPGTPK H  S++S+P PLTPPPSYYSS   ST +  SK     S
Sbjct: 18  YYGGA--SIPFIWESRPGTPKNHLCSDSSLPLPLTPPPSYYSSGILSTPRTQSKVRSKLS 77

Query: 103 IF---------------PRRTLS---SFSASSSSSCSSPSPFVRPKFFKRRRRHSLDSQS 162
            F                ++T S   S+S++SSSS  S SP   P   K+R  H   S  
Sbjct: 78  KFLSFSMFSDLRRSNHGSKKTASSSFSWSSTSSSSSFSSSP---PHSLKKRMSHDKKSPL 137

Query: 163 LPLEYNDNDNDGEEAMGSSNSPTSTLGYGGCSGRGSFLGGCYQLVSVKNALLT 196
           L   Y +++          +SPTSTL    C   G  LG    + SV  AL +
Sbjct: 138 LYANYEEDE--------LRSSPTSTL----CCSNGGRLGCSSSMGSVTRALFS 173

BLAST of CmoCh04G030010 vs. TAIR 10
Match: AT5G01790.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11
Identity = 50/121 (41.32%), Postives = 66/121 (54.55%), Query Frame = 0

Query: 13  SLKIKHEDNRFLSRVVSKDPN-----SAANSSFRV-YYGGAAGAIPFRWESRPGTPKHTF 72
           SL +K +D    S  +          SAA  SFR+ YY GAAGA+PF WES PGTPKH  
Sbjct: 31  SLSLKKQDTATFSGKLPSTKQRFSSVSAACPSFRIYYYDGAAGAVPFEWESHPGTPKHPS 90

Query: 73  SE-TSIPPLTPPPSYYSSTSHSTFKASSKPT-LLSSIFPRRT--LSSFSASSSSSCSSPS 124
           SE  ++PPLTPPPS++S +     + S K T  + ++ P R   LS      +   S+ S
Sbjct: 91  SELPTLPPLTPPPSHFSFSGDQIRRRSKKSTKKILALIPTRLFWLSGDHNGKAKKLSASS 150

BLAST of CmoCh04G030010 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 51/127 (40.16%), Postives = 70/127 (55.12%), Query Frame = 0

Query: 43  YYGGAAGAIPFRWESRPGTPK-----------HTFSETSIP---PLTPPPSYYSSTSHST 102
           YYGG++ A+PF+WES+PGTP+           ++ S+ + P   PLTPPPSY+ ++  ST
Sbjct: 24  YYGGSSAAVPFKWESQPGTPRRLSKRSSSSGFNSDSDFNFPVSAPLTPPPSYFYASPSST 83

Query: 103 FKASSKP--TLLSSIFPR-RTLSSFSASSSSSCSS--PSPFVRPKFFKRRRRHSLDSQSL 151
              S K   TL SS+  + R++ S  ASSSSS SS  PS  +R      RRR        
Sbjct: 84  KHVSPKKTNTLFSSLLSKNRSVPSSPASSSSSSSSSVPSSPLRTSDLSNRRRSMWFESGS 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1HHB71.2e-107100.00uncharacterized protein LOC111462925 OS=Cucurbita moschata OX=3662 GN=LOC1114629... [more]
A0A6J1JKP19.3e-9791.39uncharacterized protein LOC111487777 OS=Cucurbita maxima OX=3661 GN=LOC111487777... [more]
A0A5A7UC512.9e-6665.81Putative serine-rich protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A1S4E1782.9e-6665.81Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103496610 PE=4 SV=1[more]
A0A0A0K7T86.5e-6664.81Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014460 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022962524.12.4e-107100.00uncharacterized protein LOC111462925 [Cucurbita moschata][more]
KAG6602592.14.1e-10798.08hypothetical protein SDJN03_07825, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7033270.11.6e-10697.60hypothetical protein SDJN02_07324, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023545973.15.2e-10295.12uncharacterized protein LOC111804354 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023545206.12.6e-10195.10uncharacterized protein LOC111804354 isoform X1 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT2G40475.11.7e-1839.80unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G56260.21.1e-1240.46unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G01790.13.5e-1141.32unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G06930.11.7e-1040.16unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; ... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..165
NoneNo IPR availablePANTHERPTHR33257OS05G0165500 PROTEINcoord: 4..185
NoneNo IPR availablePANTHERPTHR33257:SF24EXPRESSED PROTEINcoord: 4..185

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G030010.1CmoCh04G030010.1mRNA