CmoCh04G029960 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G029960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S26
LocationCmo_Chr04: 21102628 .. 21104724 (+)
RNA-Seq ExpressionCmoCh04G029960
SyntenyCmoCh04G029960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCTGCTCCCCCACATATAAAAGGAACGGTAGCATCCTCTCGAAGCCCTAATTCAGCCGCGAAGAGATAGCTGATTCTCTCTGGTTCGTTCGTCCATCCGGAAGACTAGAACCATGGTAACCTAATCCCTCACCCCTCCGTTTGGATTATTCGATTTTGTCTAACATTTTCTTCACAATCTCGCTTTTGCTTCAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACATGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGTACTTAGGGTTTTTTTTTTTCCTCTGTCGCCTTGGTATCTCTTTCCGATGTCAATGAATAGTTTAGGTTTAGGTTTGTCTTTCTATTGATCTTTTTTGATCTGTAATGGCCAAACAATGTACACGCATCTGGAATTTTTTTTTCTAGACGCTGTTTCAATGTAACCGCTATCGATGTCCCGCCAACACTGAACTAAGATTCGTGTTTTTCACCAGCGGTTTTTTTTAATTTTCCTGTTCTGTTGCTGACTCCCTTGAATTTTCATGTTGCATAGGCTCAGATTTAGTACGTATTTGCAATTATCTGTGTGATTTTGGTCTACTGTTTCTAATTCTGTGATTTCTTATTGACGCGAATAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCGTATGATCCTTTTCTTAACATATTATTTCTTTACCTTCATTATTACAACATGAATGATAATTTCAATGTTTGTTTCTGGTACAGAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGATAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGTATATTTTCATTTAGCTTACTTTCATTTTTTGGCTCTATCGTTTTTATTCACTTTCTAGGCTTTCAATTATTTAAATCGTACGAGCCTGTGAGTGATATGTTTGTAAATTAAGCTTGCGATGACCTGCTAGGATTAGAAACTTGAGTTATATAATTGTTACTACAGTTCTATATGGCCAATGTTAGTGTTCGGATCCTCTTATTCTTTCACACAATTCTCACAATTTACTACTGGATCATTGTTGACACTGGCTTTTGCAAGTTGTGTTTATATATCATTGAAAACGCCCTCTTCTTACTTTAATGACTGGAGTTACCCTGTGTCCTTTTGCTGGGTCATGAATCGTCTTTTACTTCCATTGTTCTTGGCCCTTGTTTTTTCTTACGAGTCTCACAATTCTGGTAATGTAAGGTTGCTATTTTGTTTACTCGGTGATTTATGGACTTTTGGAAGAGAAAGTTGTTTTGTTCGTTTATATACTTGTAACAATTTATGATTGTTCGTAGCTGCTTATAGTGATTATCTCTATTCTGAATGTGTTTCTATTGCTGTTGCTTATTTTGACGGTTGAATTTTGTCCTTTGTTTCTCAGGATGATATGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGAAGAGGAACCCCTTTATATGCTCTATTTAATTTTCTCATGGTTGCTGCAATTTGGTGAACTTGAATTTTATTTAGCATTTCTCGATATATTTTTAGGGTTTTGTTTTGAGTTAAGGAATTATGCTGTACTTCTGAAATCTGATAAATTTTTGGTTTAACGAGGACTTGATTGTCGCGACTATCTAACCCGTCTCTCATATCCATTTTACGTATAGTCCATCATTCAGAACTTGGTTTTGGGGGGTTATAAATAACTGCAACACATGGTTCAACGTAGCAATATCCAATGTCACGGAAGAGGTTTCTAGCTTTCTTCAATTAATTTATGTAAAATGCAGTTCGGCCATTAGGGATTCTCGTGAAGATTTTTCGAATAGTATCCTTCTATATTTGAGGTTGTTTTGACTATAGATTCATTGTCCTTGTGAGATTTTTCCCATAACCGGTGATGTATAATCAAGTATTCCGTA

mRNA sequence

CCTTCTGCTCCCCCACATATAAAAGGAACGGTAGCATCCTCTCGAAGCCCTAATTCAGCCGCGAAGAGATAGCTGATTCTCTCTGGTTCGTTCGTCCATCCGGAAGACTAGAACCATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACATGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGATAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGATGATATGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGAAGAGGAACCCCTTTATATGCTCTATTTAATTTTCTCATGGTTGCTGCAATTTGGTGAACTTGAATTTTATTTAGCATTTCTCGATATATTTTTAGGGTTTTGTTTTGAGTTAAGGAATTATGCTGTACTTCTGAAATCTGATAAATTTTTGGTTTAACGAGGACTTGATTGTCGCGACTATCTAACCCGTCTCTCATATCCATTTTACGTATAGTCCATCATTCAGAACTTGGTTTTGGGGGGTTATAAATAACTGCAACACATGGTTCAACGTAGCAATATCCAATGTCACGGAAGAGGTTTCTAGCTTTCTTCAATTAATTTATGTAAAATGCAGTTCGGCCATTAGGGATTCTCGTGAAGATTTTTCGAATAGTATCCTTCTATATTTGAGGTTGTTTTGACTATAGATTCATTGTCCTTGTGAGATTTTTCCCATAACCGGTGATGTATAATCAAGTATTCCGTA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACATGTGAAATTCATCCGCTGCTCCAACTGTGGTAAATGCTGCCCCAAGGATAAGGCCATTAAGAGGTTCCTTGTTAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCGTGTGTCTATGATCAATACACTCTTCCTAAGCTATATGCTAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGATAGGAGGAAACGTGAGCCACCACAGCGATTCATTAGACGCAGGGATGATATGCCAAAGCCTGGACAGCCAGGACAGGCCCCTCGCGTTGGTGCTGGAGCTGGAGCTCCTCCTCCCCGTCCCTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRVGAGAGAPPPRP
Homology
[Close]
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-54
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGAGAPP 129
             GA A P
Sbjct: 121 AGGAPAAP 128

[Close]
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 212.2 bits (539), Expect = 3.5e-54
Identity = 107/129 (82.95%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGAGAPP 129
            G GA A P
Sbjct: 121 AGPGAAAAP 129

[Close]
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 107/131 (81.68%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 --VGAGAGAPP 129
              GA A A P
Sbjct: 121 AGPGAAAAAAP 131

[Close]
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.8e-48
Identity = 96/129 (74.42%), Postives = 108/129 (83.72%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RRR+D P+  +PG     
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 GAGAGAPPP 130
             GA AP P
Sbjct: 121 PGGAAAPAP 128

[Close]
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-37
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR R PP RF  +R    +PG PG  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match: A0A6J1JRW7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.4e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGAGAPPPRP 132
           GAGAGAPPPRP
Sbjct: 121 GAGAGAPPPRP 131

[Close]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match: A0A6J1E9V7 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.4e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGAGAPPPRP 132
           GAGAGAPPPRP
Sbjct: 121 GAGAGAPPPRP 131

[Close]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGAGAPP 129
           GAG GAPP
Sbjct: 121 GAGPGAPP 128

[Close]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGAGAPP 129
           GAG GAPP
Sbjct: 121 GAGPGAPP 128

[Close]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.2e-63
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]
BLAST of CmoCh04G029960 vs. NCBI nr
Match: XP_022923523.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023529343.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 9.0e-68
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120

Query: 121 GAGAGAPPPRP 132
           GAGAGAPPPRP
Sbjct: 121 GAGAGAPPPRP 131

[Close]
BLAST of CmoCh04G029960 vs. NCBI nr
Match: KAG6602587.1 (40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.6 bits (675), Expect = 4.5e-67
Identity = 130/131 (99.24%), Postives = 130/131 (99.24%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPG APRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGPAPRV 120

Query: 121 GAGAGAPPPRP 132
           GAGAGAPPPRP
Sbjct: 121 GAGAGAPPPRP 131

[Close]
BLAST of CmoCh04G029960 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 254.6 bits (649), Expect = 4.6e-64
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRR+D PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRREDAPKPGQPGQAPRV 120

Query: 121 GAGAGAPP 129
           GAG GAPP
Sbjct: 121 GAGPGAPP 128

[Close]
BLAST of CmoCh04G029960 vs. NCBI nr
Match: XP_038884330.1 (40S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosomal protein S26-3-like [Benincasa hispida])

HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63
Identity = 125/128 (97.66%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAGAGAPP 129
           GAG GAPP
Sbjct: 121 GAG-GAPP 127

[Close]
BLAST of CmoCh04G029960 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 249.6 bits (636), Expect = 1.5e-62
Identity = 121/123 (98.37%), Postives = 122/123 (99.19%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKR+PPQRFIRRRDD PKPGQPGQAPRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPKPGQPGQAPRV 120

Query: 121 GAG 124
           GAG
Sbjct: 121 GAG 123

[Close]
BLAST of CmoCh04G029960 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.4e-55
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPRP 120

Query: 121 GAGAGAPP 129
             GA A P
Sbjct: 121 AGGAPAAP 128

[Close]
BLAST of CmoCh04G029960 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 212.2 bits (539), Expect = 2.5e-55
Identity = 107/129 (82.95%), Postives = 113/129 (87.60%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 VGAGAGAPP 129
            G GA A P
Sbjct: 121 AGPGAAAAP 129

[Close]
BLAST of CmoCh04G029960 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 210.3 bits (534), Expect = 9.3e-55
Identity = 107/131 (81.68%), Postives = 113/131 (86.26%), Query Frame = 0 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDMPKPGQPGQAPR- 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 --VGAGAGAPP 129
              GA A A P
Sbjct: 121 AGPGAAAAAAP 131

The following BLAST results are available for this feature:
BLAST of CmoCh04G029960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LYK92.0e-5482.8140S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1[more]
P492063.5e-5482.9540S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2[more]
Q8LPJ71.3e-5381.6840S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2[more]
P492162.8e-4874.4240S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2... [more]
O454991.7e-3766.9540S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1[more]
BLAST of CmoCh04G029960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JRW74.4e-68100.0040S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111487002 PE=3 SV=1[more]
A0A6J1E9V74.4e-68100.0040S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111431192 PE=3 SV=... [more]
A0A6J1K0V72.2e-6496.8840S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1[more]
A0A6J1FIL82.2e-6496.8840S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=... [more]
A0A6J1BXZ87.2e-6398.3740S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV... [more]
BLAST of CmoCh04G029960 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923523.19.0e-68100.0040S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022989973.1 40S riboso... [more]
KAG6602587.14.5e-6799.2440S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022939944.14.6e-6496.8840S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso... [more]
XP_038884330.15.1e-6397.6640S ribosomal protein S26-3-like [Benincasa hispida] >XP_038884435.1 40S ribosom... [more]
XP_022134511.11.5e-6298.3740S ribosomal protein S26-1-like [Momordica charantia][more]
BLAST of CmoCh04G029960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56340.11.4e-5582.81Ribosomal protein S26e family protein [more]
AT2G40590.12.5e-5582.95Ribosomal protein S26e family protein [more]
AT2G40510.19.3e-5581.68Ribosomal protein S26e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038551Ribosomal protein S26e superfamilyGENE3D3.30.1740.20Ribosomal protein S26ecoord: 1..114
e-value: 2.0E-58
score: 197.8
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 1..105
e-value: 1.4E-54
score: 183.1
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 1..126
IPR000892Ribosomal protein S26ePROSITEPS00733RIBOSOMAL_S26Ecoord: 73..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availablePANTHERPTHR12538:SF1840S RIBOSOMAL PROTEIN S26coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G029960.1CmoCh04G029960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004784 superoxide dismutase activity