CmoCh04G029930 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G029930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRING-H2 finger protein
LocationCmo_Chr04: 21089533 .. 21091181 (-)
RNA-Seq ExpressionCmoCh04G029930
SyntenyCmoCh04G029930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATGTAATATGTAATGATGACTAATGTGGGGAAGGAATGGAAAGGCATTGTAATCTTAAAACCATATGATCCAAACTCAGGACATCAAATCTTGGCTCAGACTTGGCTTTTGGCTTGGTTCCACTGTTGAACTTGAAAGCAAATGGAAGAAGGGTAAGTAAGAGAGGGATTTTTGTGAGTGATAGGAACTTTCTACTTTCAATTTCTTTCGTGGTTCGATTTGTTCATCAATGAACTATGAGGTTAGGATTTCGCAAGTTTCTTTGAGGAATTTCATCGAACAGGTTCAAGATCTGAAGTAAATTACCTTTGGCGGAATCATTTCCTGGTGTTGTTTTGAGGTAGTGAGCAGCTCGTGTAGTTATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCAGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGTTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCCCAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGGTGAGATATCCATAACTGTAGATGAAATTAGCTGATTTCAAGGGTTTTGCATTAGCATTTGCACATAAATATTCTTTATTTGTTTGCAGTTCTTAGCTCGTTTTTTTTTATAATCATTTTGCAATAATCTGAATTATCATATAATCATGGAAGCATATAATTGATTAAATGGTAGTTAGATATATAATTATGTATTATTAAGCTTTTTCTCGAAATTTTATAAATCATAGGCACATCAAATTCACAATATAATATATCGTTACTATGTATATTAATTTCGTCTATAAAGTCGCCTATGCCAAAATTTACCATAAACTTACCTAATCTCCATCATCTCATTAATTTTCTTATATTAAATTAAAAATAAAGAAAAATCCTACCAAAATTAAAGGATTGGTTTGATAGAGGGTTCTTATCTTAACTTTCCTCTCTGTCATATCTAAACAAATAAAAAAGTCCGTATTTAACTAGAAATATCATTAAGTCATAATTAATTAATAATTAATGCAATATCGATCGTTATCTATCTATATATGTGAAAATCTAATTCAAAATTTAATCTAAATCTACTCGTAATTACTATGCTTAAATCTTATAACCTCGTGCAGTTAAAACTATACAGATTTACCTCGACCTACTTTCCATCAAATCAATCTCAGTTTCCATACAAGCTCCATCTCTGCTGATGAGTCAGCATTGTTATGCTGA

mRNA sequence

ACATGTAATATGTAATGATGACTAATGTGGGGAAGGAATGGAAAGGCATTGTAATCTTAAAACCATATGATCCAAACTCAGGACATCAAATCTTGGCTCAGACTTGGCTTTTGGCTTGGTTCCACTGTTGAACTTGAAAGCAAATGGAAGAAGGGTAAGTAAGAGAGGGATTTTTGTGAGTGATAGGAACTTTCTACTTTCAATTTCTTTCGTGGTTCGATTTGTTCATCAATGAACTATGAGGTTAGGATTTCGCAAGTTTCTTTGAGGAATTTCATCGAACAGGTTCAAGATCTGAAGTAAATTACCTTTGGCGGAATCATTTCCTGGTGTTGTTTTGAGGTAGTGAGCAGCTCGTGTAGTTATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCAGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGTTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCCCAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGATTTACCTCGACCTACTTTCCATCAAATCAATCTCAGTTTCCATACAAGCTCCATCTCTGCTGATGAGTCAGCATTGTTATGCTGA

Coding sequence (CDS)

ATGGCGTCCGATCACCACCCTCACCGTCTCCACCGTCTCCACCGCCTCCTCCTTGGCGTCGATGCGACGGCGCCGCCGTCCAATGGAACCAGAACCAAAAATTCGTACAGCAACGAAGCGAATTTCGACACGAACATGGTGATAATCCTTGCCGCGTTACTCTGCGCCTTGATTTGCGCTCTCGGATTGAACTCAATCGTTCGGTGTGCCCTCCGCTGTACTCGGCGGTTCACCTTCGAGAACGGTGGCGGCTCCGCCACGCGCCTCACTGCCGGAGGGCTGAAGAAAAGCGCATTACGCCAAATTCCTGTCGCTGTTTACGGGTCGGAGTCGGGTAAAGGGATCCGAGAAACGGATTGCCCTATCTGCCTTGGGGATTTCATCGTCGGTGAGAAAATCAAAGTTCTCCCAAAATGTAACCATGAATTTCACGTTCGATGTATCGACACCTGGTTGGTTTCCCACACGTCGTGTCCGACATGTCGTCAATCGCTTCTCGAACAACAGTCAAATCCCCAACCTGCGGAACCTGAAGTCGGAAACCAACCCGCCGGCAATTCATCGGCCGGCGGCCAAGATTTACCTCGACCTACTTTCCATCAAATCAATCTCAGTTTCCATACAAGCTCCATCTCTGCTGATGAGTCAGCATTGTTATGCTGA

Protein sequence

MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVGNQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC
Homology
[Close]
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-44
Identity = 99/166 (59.64%), Postives = 116/166 (69.88%), Query Frame = 0 

Query: 15  RLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCT 74
           RLLL   A AP +   + K    N+  FDTNMVIILAALLCALICAL LNS +RC LR T
Sbjct: 3   RLLLEPQANAPANANPKPKGGI-NDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 75  RRFTFE-------NGGGSATRLTAG-GLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 134
           RRFT +       N   +  RL A  GLKK AL+QIPV +YGS     ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 135 FIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNP 173
           F  GEK++VLPKCNH FHVRCIDTWL+S +SCPTCRQSLL +Q +P
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSP 166

[Close]
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.9e-43
Identity = 93/163 (57.06%), Postives = 112/163 (68.71%), Query Frame = 0 

Query: 15  RLLLGVDAT----APPSNGTRTKNSYSNE---ANFDTNMVIILAALLCALICALGLNSIV 74
           R LL   AT    A  +N     +S SN    A+ DT+MVIILAALLCALICALG+NS++
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVL 62

Query: 75  RCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDF 134
           RC LRCTRRFT            A G+KK AL+ IPV  Y  E    ++ T+C ICLGDF
Sbjct: 63  RCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDF 122

Query: 135 IVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQS 171
           + GE ++VLPKCNH FHV+CIDTWL+SH+SCPTCRQSLLE Q+
Sbjct: 123 VEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.4e-41
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 0 

Query: 13  LHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALR 72
           +HRLLL        ++G+   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+R
Sbjct: 1   MHRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMR 60

Query: 73  CTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEK 132
           C   F   +   + T     GLKK  L++ PVA YGS   K I  T+C ICLG+F  GE+
Sbjct: 61  C--GFGLSSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVK-IAATECAICLGEFADGER 120

Query: 133 IKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLE 168
           ++VLP CNH FH+ CIDTWLVSH+SCP CR SL+E
Sbjct: 121 VRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 0 

Query: 30  TRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGS-ATR 89
           T   + Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRC+     E GG +   R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 90  LTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCI 149
           LT  G+K+ AL+      Y +E      +T+C ICL +F+  E++K+LP C+H FHVRCI
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 159

Query: 150 DTWLVSHTSCPTCRQSLLE 168
           D WL SH+SCPTCR  L++
Sbjct: 160 DKWLSSHSSCPTCRHCLIQ 178

[Close]
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.4e-28
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 37  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFEN--GGGSATRLTAG-G 96
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR + RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 97  LKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLV 156
           +KK ALR  PV  Y  E      + +C ICL DF+ GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 157 SHTSCPTCRQSLLE 168
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

[Close]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match: A0A6J1HEW6 (RING-H2 finger protein ATL74-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.1e-123
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC 221
           NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC
Sbjct: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC 220

[Close]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match: A0A6J1JNU0 (RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487001 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 198/206 (96.12%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHP   HRLHRLLLGVDATAP SNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHP---HRLHRLLLGVDATAPQSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTA GLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTARGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQ+NPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQTNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSF 207
           N PAGNSSAGGQDLPR TFHQINLSF
Sbjct: 181 NGPAGNSSAGGQDLPRSTFHQINLSF 203

[Close]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match: A0A6J1HGR5 (RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.3e-106
Identity = 198/219 (90.41%), Postives = 203/219 (92.69%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALL 220
           NQPAGNSSAGGQ      +  + LS  + S+S    +LL
Sbjct: 181 NQPAGNSSAGGQVKTIQIYLDL-LSIKSISVSIQAPSLL 218

[Close]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match: A0A6J1HIP4 (RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111463337 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.2e-106
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQ 193
           NQPAGNSSAGGQ
Sbjct: 181 NQPAGNSSAGGQ 192

[Close]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match: A0A6J1JLN4 (RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487001 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.6e-99
Identity = 185/192 (96.35%), Postives = 186/192 (96.88%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHP   HRLHRLLLGVDATAP SNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHP---HRLHRLLLGVDATAPQSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTA GLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTARGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQ+NPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQTNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQ 193
           N PAGNSSAGGQ
Sbjct: 181 NGPAGNSSAGGQ 189

[Close]
BLAST of CmoCh04G029930 vs. NCBI nr
Match: XP_022963016.1 (RING-H2 finger protein ATL74-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC 221
           NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC
Sbjct: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALLC 220

[Close]
BLAST of CmoCh04G029930 vs. NCBI nr
Match: XP_023529295.1 (RING-H2 finger protein ATL74-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 417.2 bits (1071), Expect = 9.1e-113
Identity = 207/215 (96.28%), Postives = 207/215 (96.28%), Query Frame = 0 

Query: 1   MASDHHP---HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60
           MASDHHP   HRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL
Sbjct: 1   MASDHHPHCLHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCAL 60

Query: 61  ICALGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRE 120
           ICALGLNSIVRCALRCTRRFTFENGGGS TRLTA GLKKSALRQIPVAVYGSESGKGIRE
Sbjct: 61  ICALGLNSIVRCALRCTRRFTFENGGGSTTRLTARGLKKSALRQIPVAVYGSESGKGIRE 120

Query: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEP 180
           TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWL SHTSCPTCRQSLLEQQSNPQPAEP
Sbjct: 121 TDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLASHTSCPTCRQSLLEQQSNPQPAEP 180

Query: 181 EVGNQPAGNSSAGGQDLPRPTFHQINLSFHTSSIS 213
           EVGNQPAGNSSAG QDLPR TFHQINLSFHTSSIS
Sbjct: 181 EVGNQPAGNSSAGDQDLPRSTFHQINLSFHTSSIS 215

[Close]
BLAST of CmoCh04G029930 vs. NCBI nr
Match: XP_022989970.1 (RING-H2 finger protein ATL74-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 398.7 bits (1023), Expect = 3.3e-107
Identity = 198/206 (96.12%), Postives = 199/206 (96.60%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHP   HRLHRLLLGVDATAP SNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHP---HRLHRLLLGVDATAPQSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTA GLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTARGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQ+NPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQTNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSF 207
           N PAGNSSAGGQDLPR TFHQINLSF
Sbjct: 181 NGPAGNSSAGGQDLPRSTFHQINLSF 203

[Close]
BLAST of CmoCh04G029930 vs. NCBI nr
Match: XP_022963000.1 (RING-H2 finger protein ATL74-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 394.8 bits (1013), Expect = 4.8e-106
Identity = 198/219 (90.41%), Postives = 203/219 (92.69%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQDLPRPTFHQINLSFHTSSISADESALL 220
           NQPAGNSSAGGQ      +  + LS  + S+S    +LL
Sbjct: 181 NQPAGNSSAGGQVKTIQIYLDL-LSIKSISVSIQAPSLL 218

[Close]
BLAST of CmoCh04G029930 vs. NCBI nr
Match: XP_022963009.1 (RING-H2 finger protein ATL74-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 393.7 bits (1010), Expect = 1.1e-105
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0 

Query: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60
           MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA
Sbjct: 1   MASDHHPHRLHRLHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICA 60

Query: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120
           LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC
Sbjct: 61  LGLNSIVRCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDC 120

Query: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180
           PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG
Sbjct: 121 PICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNPQPAEPEVG 180

Query: 181 NQPAGNSSAGGQ 193
           NQPAGNSSAGGQ
Sbjct: 181 NQPAGNSSAGGQ 192

[Close]
BLAST of CmoCh04G029930 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-45
Identity = 99/166 (59.64%), Postives = 116/166 (69.88%), Query Frame = 0 

Query: 15  RLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCT 74
           RLLL   A AP +   + K    N+  FDTNMVIILAALLCALICAL LNS +RC LR T
Sbjct: 3   RLLLEPQANAPANANPKPKGGI-NDTYFDTNMVIILAALLCALICALSLNSALRCVLRIT 62

Query: 75  RRFTFE-------NGGGSATRLTAG-GLKKSALRQIPVAVYGSESGKGIRETDCPICLGD 134
           RRFT +       N   +  RL A  GLKK AL+QIPV +YGS     ++ T+C ICLGD
Sbjct: 63  RRFTSDDQVSNASNANANLGRLAAATGLKKQALKQIPVGLYGS-GIIDMKATECLICLGD 122

Query: 135 FIVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQSNP 173
           F  GEK++VLPKCNH FHVRCIDTWL+S +SCPTCRQSLL +Q +P
Sbjct: 123 FEDGEKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLLLEQPSP 166

[Close]
BLAST of CmoCh04G029930 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 175.3 bits (443), Expect = 5.6e-44
Identity = 93/163 (57.06%), Postives = 112/163 (68.71%), Query Frame = 0 

Query: 15  RLLLGVDAT----APPSNGTRTKNSYSNE---ANFDTNMVIILAALLCALICALGLNSIV 74
           R LL   AT    A  +N     +S SN    A+ DT+MVIILAALLCALICALG+NS++
Sbjct: 3   RFLLATQATPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVL 62

Query: 75  RCALRCTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDF 134
           RC LRCTRRFT            A G+KK AL+ IPV  Y  E    ++ T+C ICLGDF
Sbjct: 63  RCVLRCTRRFTPNEDPVDTNANVAKGIKKRALKVIPVDSYSPE--LKMKATECLICLGDF 122

Query: 135 IVGEKIKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLEQQS 171
           + GE ++VLPKCNH FHV+CIDTWL+SH+SCPTCRQSLLE Q+
Sbjct: 123 VEGETVRVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSLLEHQT 163

[Close]
BLAST of CmoCh04G029930 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 168.7 bits (426), Expect = 5.2e-42
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 0 

Query: 13  LHRLLLGVDATAPPSNGTRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALR 72
           +HRLLL        ++G+   + Y+ + NFD NMVIILAALLCALI ALGLNSI+RCA+R
Sbjct: 1   MHRLLLESHGGGNETSGSGGGDGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMR 60

Query: 73  CTRRFTFENGGGSATRLTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEK 132
           C   F   +   + T     GLKK  L++ PVA YGS   K I  T+C ICLG+F  GE+
Sbjct: 61  C--GFGLSSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVK-IAATECAICLGEFADGER 120

Query: 133 IKVLPKCNHEFHVRCIDTWLVSHTSCPTCRQSLLE 168
           ++VLP CNH FH+ CIDTWLVSH+SCP CR SL+E
Sbjct: 121 VRVLPPCNHSFHMSCIDTWLVSHSSCPNCRHSLIE 152

[Close]
BLAST of CmoCh04G029930 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 148.3 bits (373), Expect = 7.3e-36
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 0 

Query: 30  TRTKNSYSNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFENGGGS-ATR 89
           T   + Y  + NFD N+V++L+ LLCAL+C+LGLNSI+RCALRC+     E GG +   R
Sbjct: 40  TPAPSPYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVR 99

Query: 90  LTAGGLKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCI 149
           LT  G+K+ AL+      Y +E      +T+C ICL +F+  E++K+LP C+H FHVRCI
Sbjct: 100 LTNTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 159

Query: 150 DTWLVSHTSCPTCRQSLLE 168
           D WL SH+SCPTCR  L++
Sbjct: 160 DKWLSSHSSCPTCRHCLIQ 178

[Close]
BLAST of CmoCh04G029930 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-29
Identity = 62/134 (46.27%), Postives = 87/134 (64.93%), Query Frame = 0 

Query: 37  SNEANFDTNMVIILAALLCALICALGLNSIVRCALRCTRRFTFEN--GGGSATRLTAG-G 96
           ++E N   N++++L+ L+C +IC LGL+ I+RCALR + RF         S+TR ++  G
Sbjct: 49  THENNLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKG 108

Query: 97  LKKSALRQIPVAVYGSESGKGIRETDCPICLGDFIVGEKIKVLPKCNHEFHVRCIDTWLV 156
           +KK ALR  PV  Y  E      + +C ICL DF+ GE++++LPKCNH FHVRCID WL 
Sbjct: 109 IKKKALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQ 168

Query: 157 SHTSCPTCRQSLLE 168
            H +CP CR  L+E
Sbjct: 169 QHLTCPKCRNCLVE 182

The following BLAST results are available for this feature:
BLAST of CmoCh04G029930 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SG963.2e-4459.64RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1[more]
Q9FLC67.9e-4357.06RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1[more]
Q9LZV87.4e-4154.84RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1[more]
Q6NQG71.0e-3448.92RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1[more]
P0C0341.4e-2846.27RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1[more]
BLAST of CmoCh04G029930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HEW66.1e-123100.00RING-H2 finger protein ATL74-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1JNU01.6e-10796.12RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
A0A6J1HGR52.3e-10690.41RING-H2 finger protein ATL74-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1HIP45.2e-106100.00RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LO... [more]
A0A6J1JLN41.6e-9996.35RING-H2 finger protein ATL74-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1... [more]
BLAST of CmoCh04G029930 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022963016.11.3e-122100.00RING-H2 finger protein ATL74-like isoform X3 [Cucurbita moschata][more]
XP_023529295.19.1e-11396.28RING-H2 finger protein ATL74-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022989970.13.3e-10796.12RING-H2 finger protein ATL74-like isoform X1 [Cucurbita maxima][more]
XP_022963000.14.8e-10690.41RING-H2 finger protein ATL74-like isoform X1 [Cucurbita moschata][more]
XP_022963009.11.1e-105100.00RING-H2 finger protein ATL74-like isoform X2 [Cucurbita moschata][more]
BLAST of CmoCh04G029930 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10910.12.3e-4559.64RING/U-box superfamily protein [more]
AT5G05280.15.6e-4457.06RING/U-box superfamily protein [more]
AT5G01880.15.2e-4254.84RING/U-box superfamily protein [more]
AT1G49230.17.3e-3648.92RING/U-box superfamily protein [more]
AT1G49220.11.0e-2946.27RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 120..161
e-value: 3.2E-7
score: 40.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 119..162
e-value: 3.1E-12
score: 46.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 120..162
score: 11.972923
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 84..167
e-value: 5.5E-22
score: 79.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 169..194
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 14..180
NoneNo IPR availablePANTHERPTHR45798:SF44RING-H2 FINGER PROTEIN ATL74coord: 14..180
NoneNo IPR availableCDDcd16486mRING-H2-C3H2C2D_ZSWM2coord: 120..162
e-value: 3.90796E-17
score: 70.3333
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 115..173

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G029930.1CmoCh04G029930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane