CmoCh04G029850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G029850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	COX assembly mitochondrial protein
Location	Cmo_Chr04: 21066372 .. 21068454 (-)
RNA-Seq Expression	CmoCh04G029850
Synteny	CmoCh04G029850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAAAAGAATTCCAAGAGTGGGCTTCTAGTTCTAGCAAAACTAGGATTTAGGGTTCTTAGGGAAAAGATTGGAAAGAAGAGAAGCGACTAAAAACTGGGGAGTGGAATTGATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGGTATTTAATCCAATCTTGCTTTCGTCCTTTACCTGTTTAATCTGCTTTTGATTGCTGAGGAACATGATGCGTCTGTTCAATTTTTGAGTCTTGTATCTTGTATCTTGCAACTGCTGTTGAAACTTCTGGTGTGTTTCCAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGGTATGCCGAATGCGTCTACGCCAAAGCGTTATCTGTTGTTTTCAACTGTCGCAATCAAGCTTAAGAACTGAACGATTGCCTTCGCCAATAGTGAGTCTCTGATTATTTTGCTTAGCTTTTGGGTAGTTGTATTGAATTTCATCTGCATTTTGTTCGCATTGTTTGTTCGGCTTCTCTTCTGTTCATAACAATGTGCATTATCATCGTTCCTCACGCACCAATTATCATGTTTATCGAATTGTTACGATATTGTTGTCCTGTGAAAACATCTTCCTAGTAGACATTTAAAATCGTGAGGTTGATGACAATATGTAACGGGTCAAAACAGACAATATCTGTTAGCGGTGGGCTTGGGCGGTTACAAATGGTATCAGAGTTAGTCACCAGATGGTGTGCTAGCAAGGATGCTGGCCCCCAAGGGGGTGGGTTGTGAGATCTCACATTGGTTGGAGAGGGGAACAAAGCATTTCTTATAAGGGTGTGGAAACATTATCTCCCTACTAGACGCGTTTTAAAACCGTGAGGTTGAAGGCAATATATAACGGGCCAAAGTAGACAATATCTACTAGCAGTAGGCTTGAGCTGTTACAATTTGCCTTAGAATGAATTTTGAGCGGGGGGACAAAAATGGCCGTCCGTGAGCGTATTATGGCATGGGCGACGCCCATGAAACAAATATCTGATAGTGCCTCAACAGGAGGGAAAGGTGATGCTATACCACAAGATGGATGTTCAAGCAAGCCTTTATAAAGATGTAAGAGCTCATTGGTTGTTTATTGATACATGCCTACAGCCAAATGGTGGCACTTATGGGTACCCCAAGGTGAGGCAGTCTTATGCCAAGACTCATTTTGAGTGTAGTGAGTTGTAGAGTGTGTGGGCAACGGTGCATCCAGGATGCAATGGCCTTGTCTGCGTAGAGGCAAGATGAGCACCCTAAGGCTAAGCAGGCTATTGTTGGATCGAGAGTCTTTTGGGAGGATAAGCTTTAGACTAAGCCAACTATGGGCTAGAAGGAGCTCATTTTGAGTAGCTTGAATGAACGCAACAAAGTGAAGTTGGTATCAAAAGGAGTCTGGTGATACAACCATGGGCAGACCTAGCCAAGGACTCATGGGAAGTGGATTCTTAATCCTAATGGTCTCTTCTGTAGCGTTTTTTTATAGCTATAATAGAGTATGATACTATAGTTTATATAAGTTTCATTTATTCATGTATTGTTTGTTTACTATTAGTTTTTGGGTTAGAATATGCACATCCTTTGACTCGTATTTGACCTCTCCTAGCAAGATGAGAACCTTTTTATCTATGGTTATGGTACACATTCCTTTCAAAAACGAAAACATTATGCTATGGATGCACAAATAAAGGTAGAGGTCCTTCTACGATTCTTAACGAACGATTCCAACCAAGAGCTAGTTAAAGGTCTCTTGAATTTTCTTTATTTTGATTTTTGTAATTGCTCCTGGATCAGTGGTTAGATTCATATCATGTTTTCTTTTCATTTTCCAGCACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATTCATGGCTGTTAACATTCATTCTTAAAGGTCGGTCAAGATTCATAACCTTGACACTTCAAATGTATATACTTTTCTTATTAG

mRNA sequence

ATTAAAAAGAATTCCAAGAGTGGGCTTCTAGTTCTAGCAAAACTAGGATTTAGGGTTCTTAGGGAAAAGATTGGAAAGAAGAGAAGCGACTAAAAACTGGGGAGTGGAATTGATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGAACTGAACGATTGCCTTCGCCAATACACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATTCATGGCTGTTAACATTCATTCTTAAAGGTCGGTCAAGATTCATAACCTTGACACTTCAAATGTATATACTTTTCTTATTAG

Coding sequence (CDS)

ATGCTGCTAATTCCTGTGCTCCTATGGCTTTCTAAGATGGGTTACTTGCAGGATGCTCGAGAGAATCATGTGAAGAAGAAAGCAGAGGAAGCTTTGCGTAGCAAAATGAAGCAGAAGGCGTTGAGGGAGTGCGATCATTACGCCTCGAGAACTGAACGATTGCCTTCGCCAATACACCAACGACGACATGTTGGAAGAGATGAAGCAGCAGGAGTATGCACTTCAACAAAATGGCAAGCCGTGAGGAAGAGTATAACATCATTCATGGCTGTTAACATTCATTCTTAA

Protein sequence

MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASRTERLPSPIHQRRHVGRDEAAGVCTSTKWQAVRKSITSFMAVNIHS

Homology

[Close]

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL
Match: A0A6J1BW91 (COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC111006094 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYASR
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASR 38

[Close]

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL
Match: A0A1S3CA82 (COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS+
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL
Match: A0A6P3ZNL2 (COX assembly mitochondrial protein OS=Ziziphus jujuba OX=326968 GN=LOC107416569 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.3e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS+
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL
Match: A0A6J1K100 (COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKA++ECDHYAS+
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL
Match: A0A1R3JIT5 (COX assembly mitochondrial protein OS=Corchorus olitorius OX=93759 GN=COLO4_16183 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGYLQ+ARENHVKKK EEALRSKMKQKAL+ECDHY S+
Sbjct: 1  MGYLQEARENHVKKKVEEALRSKMKQKALKECDHYTSK 38

[Close]

BLAST of CmoCh04G029850 vs. NCBI nr
Match: KAG6602577.1 (hypothetical protein SDJN03_07810, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASRT 52
          MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYAS T
Sbjct: 1  MLLIPVLLWLSKMGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASST 51

[Close]

BLAST of CmoCh04G029850 vs. NCBI nr
Match: XP_022133533.1 (uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncharacterized protein DDB_G0275933 [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-09
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYASR
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASR 38

[Close]

BLAST of CmoCh04G029850 vs. NCBI nr
Match: XP_008459466.1 (PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 5.3e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS+
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKALKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. NCBI nr
Match: XP_015880562.1 (uncharacterized protein DDB_G0275933 [Ziziphus jujuba])

HSP 1 Score: 70.9 bits (172), Expect = 6.9e-09
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKAL+ECDHYAS+
Sbjct: 1  MGYVQEARENHVKKKVEEALRSKMKQKALKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. NCBI nr
Match: KAG6578501.1 (hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 9.0e-09
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 13 MGYLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          MGY+Q+ARENHVKKK EEALRSKMKQKA++ECDHYAS+
Sbjct: 1  MGYIQEARENHVKKKVEEALRSKMKQKAMKECDHYASK 38

[Close]

BLAST of CmoCh04G029850 vs. TAIR 10
Match: AT5G16060.1 (Cytochrome c oxidase biogenesis protein Cmc1-like )

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 15 YLQDARENHVKKKAEEALRSKMKQKALRECDHYASR 51
          Y++ ARENHVKKK EEALRSKMK KAL ECD Y S+
Sbjct: 4  YVEQARENHVKKKVEEALRSKMKAKALMECDQYVSK 39

The following BLAST results are available for this feature:

BLAST of CmoCh04G029850 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G029850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BW91	1.1e-09	89.47	COX assembly mitochondrial protein OS=Momordica charantia OX=3673 GN=LOC11100609...	[more]
A0A1S3CA82	2.6e-09	86.84	COX assembly mitochondrial protein OS=Cucumis melo OX=3656 GN=LOC103498594 PE=3 ...	[more]
A0A6P3ZNL2	3.3e-09	86.84	COX assembly mitochondrial protein OS=Ziziphus jujuba OX=326968 GN=LOC107416569 ...	[more]
A0A6J1K100	4.4e-09	84.21	COX assembly mitochondrial protein OS=Cucurbita maxima OX=3661 GN=LOC111489669 P...	[more]
A0A1R3JIT5	4.4e-09	86.84	COX assembly mitochondrial protein OS=Corchorus olitorius OX=93759 GN=COLO4_1618...	[more]

BLAST of CmoCh04G029850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602577.1	2.4e-17	98.04	hypothetical protein SDJN03_07810, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022133533.1	2.4e-09	89.47	uncharacterized protein DDB_G0275933 [Momordica charantia] >XP_022133534.1 uncha...	[more]
XP_008459466.1	5.3e-09	86.84	PREDICTED: uncharacterized protein DDB_G0275933 [Cucumis melo]	[more]
XP_015880562.1	6.9e-09	86.84	uncharacterized protein DDB_G0275933 [Ziziphus jujuba]	[more]
KAG6578501.1	9.0e-09	84.21	hypothetical protein SDJN03_22949, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh04G029850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G16060.1	1.3e-08	75.00	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029850.1	CmoCh04G029850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion