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CmoCh04G028870 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAAGTATGTAAACCTCTCTCTAATATATGCATTTTAAAATCGTGAAACTAACGACGATAATGGTGTGTATTAATTCTACAAATCGTATAATACTATGCATGCAATCCACGACATTGAATATAAAAAACATATAATGAGATAAGGAGATTAGTGAAGCATGAAGATAAAGATGAAGAATACAATATTTTATAATTTTTGTATATAAAAAGCAATAAATTGGGTTAGACATGAAATAAATGATGAGTATGATAGAACCCCATATGTCATATATTCTACCATGGCCCTCCAATAACTGATTAACAAGGACAACATGCTTTGCTTTGCTTTGCTTGCTTGCTTGCTTCTACTTTACACCCTCATTAACTCCCACACAATTAATGCAAAAGGGAAATCTCATTCATAAATTTCAAGATAAGAGTTTTCATTCCCCTACAACTCTCTTAAATCATTCATGTATGACCTCTGTTGAAAATAATGTGAAATTCAATAGTAGAACGAAGTATTTTTTATAAAGATGTGGAAACCTCTCCTTAGTAAATTCGTTTTAAAACCATGAGACTTACAATAATATGTAACGGGCTAAAGTGGACAATATCTGTTTACGGTGGGTTTGAGCTATTATTACAAATGATATCAGAGTTAGGCACTAAGCAATGTGCTAGCGAAGAGTGGATTGTGGGATCCCACATCGGTTAGAGAGAAGAACGAAACATTATTTATAAGTGTGTGAAAACCTCTCCCTAGTAGACACGTTTTAAAACTCGTAGAAGTGATTTGTTTTTTTAGGGTGGGGGAGGGAAAGTGTGGGTGCCCTACAAATGAACAAGTTGGTGGTTAATGGCAAAATAATAAAATTGGTTTTTAGTCGTGGCAACAAATTAATAATGGAGAGATTAGAGGGGGGAGGGTGAGAGGCACGTGAGGATGCTAGAGAAAAGTATGGAAATTTCACATCTATGCTTGTGTTTAGAAATATGTTCCCTTTTTTATTTAAAAAAAAAATAAATACTAAAACATAAGGCATGCCACGTGGCACGTCGTTTTCTCTTAGGAAATTGCATGTGACTTTGCCCTTTCACAATCTTATGCAAATCTATCTCTTCTCTCACCTACTAATGTCTCACTCATCAAACCTTCCAATATTTTTTAAAAAATTATTATTATATGATTTTAAAAAAAAATTTAACTATAGTTTAGGGACACAGATGTCAAGTGTGCATCTTATTTTATGGTCACATGAGAAATAGTAAATGAAAATAAATGTTGACAAACGTGAAACGATAAGGAGAATCTTAGGCAAATTTAAATATTTTATTAGAGTCAAATAAATACCATTGGAGAGAAAAAGAACAAAACAATAGTTATCAAATAAAATTCATATAGAAAGTCGATGAAAACTATAAATAATTTCGACTTAAATTTAAATTTAAAAAAACTTTAAAATGGGAGAAAATAAATAAATAAAAAGTGTGGTAAATGTACCGATATTTATAAAATTAAAATATTATAAAAAGTTAGATATTGAAGATATTATAAACCACTCATCTAACATATTGTAATATCTTGTTGATGATAAATAGTGGTAGAAATATATGCATCAATTTACATCACAATAATTGTTTAATATTAATTTGAGATATTATATATTTTTAGATTTTTAAAATGGTAATTCATTAATTAATCATTTAAAATATTGCAAAGGAATAAACATTCAATAAAAAAATCTGAATATTTTTTTTTTAGTACACTCGTATTTATTGTAAAAATTTTGGTTGGAAGAGAATTTATTATGAAAAAAGATTGTATAAAGTCATAACGCATTTAAATTTTATTTAATCCACTCTCATTAATTAGACTCCCCATTAAATGTATATCCCTATGTCGCTTTCTTTTTATTTAATTTTCTTATCTATTTCATCCTCTTACCTTCTCTGTACGGTATTTATATATTTATATTATACTTTCCAATACCCTTTAATTCAAAATAAAATATCTTATCAGGAACGTTTCGTTCTCCAACCAACAAATATTGTCCATTTTGACCCGTTGCATATCATTGTAAGCTTCAAGGTCTTAAAACGTGTTTGTTAAGGAGATGTTTCCACACCATTATTAGGAATTCTCCATTCTTCTTTCCAACCATAAATTTCTCAATTCACCCCCTTAGGATTTGAACGTTGTCGTTGGCATACTACCTCATGTCTGGCTCTAATATCATTTGTAAAAACTCAAGCTCATCGCTAACAGATATTGTTCATTTTAGCCTGTTACTTATCCTCGTCAATCTCACAATTCTAAAACACGTCTGTTAGGGAGAAGTTTCCACACTTTTATAAAGAATGCTACGTTCTCCTCTTCAAACAATATGGGATCTCACAATCCACTCCCTTTAGAAGGCCAACAACATCGTTGGCACACTGTTCTGTATCTGGTTCTGATGCCATTTGTAAAAACCCGAGTCCACCGCTAACAGATATTGTCCACTTTGGCCCGTAACGTATCATCGTCAGCCTCACGATTTTAAAATGCATATGTTAGAGAGAGGTTTCCACACCCTTACGAGGAAAGCTTCTCCCTTTGTGAGCCGTTGTTATTTCTCTGTTGCTTGTTTATATAACGTCTCTTTCAAAAATCTCTCTTTGCCCTCGTTTTCTAAAACCTTCTCTTAAAACCGAGGTCAGAGGTTCGAACATACGTTGCTTGGTCATAGACGACGCAAGAACGAATTGGCTTAGCTCATTTGTCGTTGGAAAGTGAGTGCCGCACAATCGCAAGTCTGCTGCCATCAAAAGTGTGATTGTGAGTGACAAGCGTTCCTCTCTCTGTGTGAGGGAGGGGTAAAAGGGGGGAGGAGGGGTAAAGAAACGTGGCAAGATGTGATTGGTGAGAGAAGTATGTGTAAGAGAGAAATGGAGAGGGAAATGAGTGAGTGTGGTTAAGGAAATGGGGAAATCACATGGAGTTGTGGATTGAGACATAAACAAGAAAGGCCCACTGTGTTAAGGGAAGAACAAACACATTTGTTGAAGCCCACTTGAGTTGAATCCCTAACTTGGGAACACAAAAACAGACTACACAAACTCTCTTCCCCTTCCTATAACACTAACCCAACTCCCACTCCTTTCTCCCAACCATTTGTCTTCTTCATATCCAACACTTCCACCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTCCTCTTTATAACTCTTATCACTTCCCCTCCCTCCCCCTTCAACCCCAACTTCTTCTCTCATCAACTCAACACTCACACCATATCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTACAACTCCCCTCCTCACAACTTCTTATACTCAAATCTACATTTTTGGGGGAAAAAGAGAAAAAAAAAATCAAATGTTTGTGTTGCTTTAAGCTAAAGATTCTGATTGTCGTGATGGGAGGTGTTCATATTTGACTCTATTATTATTATTATTATTATTATTATACACTTAATTCATGGCACTGATTGGAAATGTACGGTCGGTGGAAACAAACTCCATTGGTGAGTCTAAGTCAATTAAAGAATTTAACAATAACGTTAGCTAAGTAAAGTAATTCAAAAGTTTTGGATTTTAATTGGGGTTTCCACAAAACATATAATTAAATCAAACCCACTTCATTCAAAATGGCCTAAACAAACAAACCTAAAGTACATCCAAGTGTTTGCTTTTTGTTTAATTTCAGATTTGACATTATTATTATTATTATTATTATTTAATATTTTAATTTGTTCTTATCTGTTCTTCAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACAAGAACCAGGCAGTTGGGTTTGGTAATGCTATATATATATATAAATATATAAATATATATTTTTATAATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTGATATTCCCTTTTCTAGGTTTTTGGTGGCTTAGATGAAAAAAAGGGAAATTTAAAAAAGGGTGTATTTTTCCATGAAAAGAGAAGCTTCCCTTTTATTATTATTATAGGGATGTAACCAAAATGTATAATAAAAGGAGTTGCATTAGCAAACCCTTTTATTATTTCTATAAAGTTGTACAAATACACCCAAAAAATGTACCATCTTCTCGCTTTTATTTGAGAGAGAGAGAGAGAAATTAATATCATCAATTTAGCTTTTC ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACAAGAACCAGGCAGTTGGGTTTGGTAATGCTATATATATATATAAATATATAAATATATATTTTTATAATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTGATATTCCCTTTTCTAGGTTTTTGGTGGCTTAGATGAAAAAAAGGGAAATTTAAAAAAGGGTGTATTTTTCCATGAAAAGAGAAGCTTCCCTTTTATTATTATTATAGGGATGTAACCAAAATGTATAATAAAAGGAGTTGCATTAGCAAACCCTTTTATTATTTCTATAAAGTTGTACAAATACACCCAAAAAATGTACCATCTTCTCGCTTTTATTTGAGAGAGAGAGAGAGAAATTAATATCATCAATTTAGCTTTTC ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG MLRMVGEENETFIIKPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ Homology
BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 3.8e-29 Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 3.9e-26 Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 4.3e-25 Identity = 60/81 (74.07%), Postives = 73/81 (90.12%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23 Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23 Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A6J1GKQ6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=4 SV=1) HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35 Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 4.5e-33 Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32 Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32 Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32 Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35 Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_022952488.1 (transcription factor PRE6-like, partial [Cucurbita moschata]) HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35 Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. NCBI nr
Match: KAG7033162.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35 Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia]) HSP 1 Score: 150.2 bits (378), Expect = 9.2e-33 Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0
BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa]) HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31 Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0
BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein ) HSP 1 Score: 128.6 bits (322), Expect = 2.7e-30 Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0
BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27 Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0
BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein ) HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26 Identity = 60/81 (74.07%), Postives = 73/81 (90.12%), Query Frame = 0
BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 ) HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24 Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 0
BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 ) HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24 Identity = 58/83 (69.88%), Postives = 74/83 (89.16%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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