CmoCh04G028870 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G028870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Transcription factor protein
Location	Cmo_Chr04: 20548745 .. 20553197 (-)
RNA-Seq Expression	CmoCh04G028870
Synteny	CmoCh04G028870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAAGTATGTAAACCTCTCTCTAATATATGCATTTTAAAATCGTGAAACTAACGACGATAATGGTGTGTATTAATTCTACAAATCGTATAATACTATGCATGCAATCCACGACATTGAATATAAAAAACATATAATGAGATAAGGAGATTAGTGAAGCATGAAGATAAAGATGAAGAATACAATATTTTATAATTTTTGTATATAAAAAGCAATAAATTGGGTTAGACATGAAATAAATGATGAGTATGATAGAACCCCATATGTCATATATTCTACCATGGCCCTCCAATAACTGATTAACAAGGACAACATGCTTTGCTTTGCTTTGCTTGCTTGCTTGCTTCTACTTTACACCCTCATTAACTCCCACACAATTAATGCAAAAGGGAAATCTCATTCATAAATTTCAAGATAAGAGTTTTCATTCCCCTACAACTCTCTTAAATCATTCATGTATGACCTCTGTTGAAAATAATGTGAAATTCAATAGTAGAACGAAGTATTTTTTATAAAGATGTGGAAACCTCTCCTTAGTAAATTCGTTTTAAAACCATGAGACTTACAATAATATGTAACGGGCTAAAGTGGACAATATCTGTTTACGGTGGGTTTGAGCTATTATTACAAATGATATCAGAGTTAGGCACTAAGCAATGTGCTAGCGAAGAGTGGATTGTGGGATCCCACATCGGTTAGAGAGAAGAACGAAACATTATTTATAAGTGTGTGAAAACCTCTCCCTAGTAGACACGTTTTAAAACTCGTAGAAGTGATTTGTTTTTTTAGGGTGGGGGAGGGAAAGTGTGGGTGCCCTACAAATGAACAAGTTGGTGGTTAATGGCAAAATAATAAAATTGGTTTTTAGTCGTGGCAACAAATTAATAATGGAGAGATTAGAGGGGGGAGGGTGAGAGGCACGTGAGGATGCTAGAGAAAAGTATGGAAATTTCACATCTATGCTTGTGTTTAGAAATATGTTCCCTTTTTTATTTAAAAAAAAAATAAATACTAAAACATAAGGCATGCCACGTGGCACGTCGTTTTCTCTTAGGAAATTGCATGTGACTTTGCCCTTTCACAATCTTATGCAAATCTATCTCTTCTCTCACCTACTAATGTCTCACTCATCAAACCTTCCAATATTTTTTAAAAAATTATTATTATATGATTTTAAAAAAAAATTTAACTATAGTTTAGGGACACAGATGTCAAGTGTGCATCTTATTTTATGGTCACATGAGAAATAGTAAATGAAAATAAATGTTGACAAACGTGAAACGATAAGGAGAATCTTAGGCAAATTTAAATATTTTATTAGAGTCAAATAAATACCATTGGAGAGAAAAAGAACAAAACAATAGTTATCAAATAAAATTCATATAGAAAGTCGATGAAAACTATAAATAATTTCGACTTAAATTTAAATTTAAAAAAACTTTAAAATGGGAGAAAATAAATAAATAAAAAGTGTGGTAAATGTACCGATATTTATAAAATTAAAATATTATAAAAAGTTAGATATTGAAGATATTATAAACCACTCATCTAACATATTGTAATATCTTGTTGATGATAAATAGTGGTAGAAATATATGCATCAATTTACATCACAATAATTGTTTAATATTAATTTGAGATATTATATATTTTTAGATTTTTAAAATGGTAATTCATTAATTAATCATTTAAAATATTGCAAAGGAATAAACATTCAATAAAAAAATCTGAATATTTTTTTTTTAGTACACTCGTATTTATTGTAAAAATTTTGGTTGGAAGAGAATTTATTATGAAAAAAGATTGTATAAAGTCATAACGCATTTAAATTTTATTTAATCCACTCTCATTAATTAGACTCCCCATTAAATGTATATCCCTATGTCGCTTTCTTTTTATTTAATTTTCTTATCTATTTCATCCTCTTACCTTCTCTGTACGGTATTTATATATTTATATTATACTTTCCAATACCCTTTAATTCAAAATAAAATATCTTATCAGGAACGTTTCGTTCTCCAACCAACAAATATTGTCCATTTTGACCCGTTGCATATCATTGTAAGCTTCAAGGTCTTAAAACGTGTTTGTTAAGGAGATGTTTCCACACCATTATTAGGAATTCTCCATTCTTCTTTCCAACCATAAATTTCTCAATTCACCCCCTTAGGATTTGAACGTTGTCGTTGGCATACTACCTCATGTCTGGCTCTAATATCATTTGTAAAAACTCAAGCTCATCGCTAACAGATATTGTTCATTTTAGCCTGTTACTTATCCTCGTCAATCTCACAATTCTAAAACACGTCTGTTAGGGAGAAGTTTCCACACTTTTATAAAGAATGCTACGTTCTCCTCTTCAAACAATATGGGATCTCACAATCCACTCCCTTTAGAAGGCCAACAACATCGTTGGCACACTGTTCTGTATCTGGTTCTGATGCCATTTGTAAAAACCCGAGTCCACCGCTAACAGATATTGTCCACTTTGGCCCGTAACGTATCATCGTCAGCCTCACGATTTTAAAATGCATATGTTAGAGAGAGGTTTCCACACCCTTACGAGGAAAGCTTCTCCCTTTGTGAGCCGTTGTTATTTCTCTGTTGCTTGTTTATATAACGTCTCTTTCAAAAATCTCTCTTTGCCCTCGTTTTCTAAAACCTTCTCTTAAAACCGAGGTCAGAGGTTCGAACATACGTTGCTTGGTCATAGACGACGCAAGAACGAATTGGCTTAGCTCATTTGTCGTTGGAAAGTGAGTGCCGCACAATCGCAAGTCTGCTGCCATCAAAAGTGTGATTGTGAGTGACAAGCGTTCCTCTCTCTGTGTGAGGGAGGGGTAAAAGGGGGGAGGAGGGGTAAAGAAACGTGGCAAGATGTGATTGGTGAGAGAAGTATGTGTAAGAGAGAAATGGAGAGGGAAATGAGTGAGTGTGGTTAAGGAAATGGGGAAATCACATGGAGTTGTGGATTGAGACATAAACAAGAAAGGCCCACTGTGTTAAGGGAAGAACAAACACATTTGTTGAAGCCCACTTGAGTTGAATCCCTAACTTGGGAACACAAAAACAGACTACACAAACTCTCTTCCCCTTCCTATAACACTAACCCAACTCCCACTCCTTTCTCCCAACCATTTGTCTTCTTCATATCCAACACTTCCACCACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTTCCTCTTTATAACTCTTATCACTTCCCCTCCCTCCCCCTTCAACCCCAACTTCTTCTCTCATCAACTCAACACTCACACCATATCTACCCGGAGATCAAGGCAGCCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTACAACTCCCCTCCTCACAACTTCTTATACTCAAATCTACATTTTTGGGGGAAAAAGAGAAAAAAAAAATCAAATGTTTGTGTTGCTTTAAGCTAAAGATTCTGATTGTCGTGATGGGAGGTGTTCATATTTGACTCTATTATTATTATTATTATTATTATTATACACTTAATTCATGGCACTGATTGGAAATGTACGGTCGGTGGAAACAAACTCCATTGGTGAGTCTAAGTCAATTAAAGAATTTAACAATAACGTTAGCTAAGTAAAGTAATTCAAAAGTTTTGGATTTTAATTGGGGTTTCCACAAAACATATAATTAAATCAAACCCACTTCATTCAAAATGGCCTAAACAAACAAACCTAAAGTACATCCAAGTGTTTGCTTTTTGTTTAATTTCAGATTTGACATTATTATTATTATTATTATTATTTAATATTTTAATTTGTTCTTATCTGTTCTTCAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACAAGAACCAGGCAGTTGGGTTTGGTAATGCTATATATATATATAAATATATAAATATATATTTTTATAATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTGATATTCCCTTTTCTAGGTTTTTGGTGGCTTAGATGAAAAAAAGGGAAATTTAAAAAAGGGTGTATTTTTCCATGAAAAGAGAAGCTTCCCTTTTATTATTATTATAGGGATGTAACCAAAATGTATAATAAAAGGAGTTGCATTAGCAAACCCTTTTATTATTTCTATAAAGTTGTACAAATACACCCAAAAAATGTACCATCTTCTCGCTTTTATTTGAGAGAGAGAGAGAGAAATTAATATCATCAATTTAGCTTTTC

mRNA sequence

ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAGGGAAAGAACAAGAACAAGAACCAGGCAGTTGGGTTTGGTAATGCTATATATATATATAAATATATAAATATATATTTTTATAATATAAGATATGATGTTACTATGTTATTTATATGGGTTTTTGATATTCCCTTTTCTAGGTTTTTGGTGGCTTAGATGAAAAAAAGGGAAATTTAAAAAAGGGTGTATTTTTCCATGAAAAGAGAAGCTTCCCTTTTATTATTATTATAGGGATGTAACCAAAATGTATAATAAAAGGAGTTGCATTAGCAAACCCTTTTATTATTTCTATAAAGTTGTACAAATACACCCAAAAAATGTACCATCTTCTCGCTTTTATTTGAGAGAGAGAGAGAGAAATTAATATCATCAATTTAGCTTTTC

Coding sequence (CDS)

ATGTTACGAATGGTTGGAGAGGAAAACGAAACATTCATTATAAAACCCGGTGCTTCCCGAATCTCCGACGACCAAATCATCGAACTCATTTCCAAGCTTCGACACCTTGTCCCCGAGATTCGCCATCGCCGCTCCGACAAGGTTTCAGCCTCAAAAGTCCTCCAAGAGACCTGCAATTACATTAGAAACTTACACAGGGAGGTGGATGACCTAAGTGAAAGGCTCTCTCAGCTCTTGTCTACAATAGATGCTGATAGTGCAGAGGCAGCCATAATTAGGAGCTTAATTATGCAATAG

Protein sequence

MLRMVGEENETFIIKPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQLLSTIDADSAEAAIIRSLIMQ

Homology

[Close]

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.8e-29
Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS
Sbjct: 13 GSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLS 72

Query: 77 QLLSTIDADSAEAAIIRSLI 97
          +LL++ D +SAEAAIIRSL+
Sbjct: 73 ELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q9LJX1 (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.9e-26
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 77
          ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLS
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 78 QLLSTIDADSAEAAIIRSLIM 98
          QLL ++D DS EAA+IRSL+M
Sbjct: 72 QLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-25
Identity = 60/81 (74.07%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 77
          A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLS
Sbjct: 12 APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLS 71

Query: 78 QLLSTIDADSAEAAIIRSLIM 98
          QLL ++D DS EAA+IRSL+M
Sbjct: 72 QLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS
Sbjct: 12 GSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQEVDDLSERLS 71

Query: 77 QLLSTIDADSAEAAIIRSLIM 98
          +LL+T D  SA+AAIIRSL+M
Sbjct: 72 ELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-23
Identity = 55/81 (67.90%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G+SRI+D+QI +L+SKL+ L+PE R R +D+V +S+VLQETCNYIR+LH+EVDDLSERLS
Sbjct: 12 GSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQEVDDLSERLS 71

Query: 77 QLLSTIDADSAEAAIIRSLIM 98
          +LL+T D  SA+AAIIRSL+M
Sbjct: 72 ELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A6J1GKQ6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 15  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 74
           +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER
Sbjct: 67  QPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 126

Query: 75  LSQLLSTIDADSAEAAIIRSLIMQ 99
           LSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 127 LSQLLSTIDADSAEAAIIRSLIMQ 150

[Close]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A6J1BY51 (transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.5e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS
Sbjct: 10 GGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 69

Query: 77 QLLSTIDADSAEAAIIRSLIMQ 99
          QLLSTIDADSAEAAIIRSLIMQ
Sbjct: 70 QLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A5A7T970 (Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold33818G00010 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 77
          ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQ
Sbjct: 11 ASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 70

Query: 78 LLSTIDADSAEAAIIRSLIMQ 99
          LLSTID+DSAEAAIIRSLIMQ
Sbjct: 71 LLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A0A0KXB9 (Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 77
          ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQ
Sbjct: 11 ASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 70

Query: 78 LLSTIDADSAEAAIIRSLIMQ 99
          LLSTID+DSAEAAIIRSLIMQ
Sbjct: 71 LLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL
Match: A0A1S3CB29 (transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.4e-32
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 77
          ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQ
Sbjct: 11 ASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 70

Query: 78 LLSTIDADSAEAAIIRSLIMQ 99
          LLSTID+DSAEAAIIRSLIMQ
Sbjct: 71 LLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_023548992.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transcription factor PRE5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 15 KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 74
          +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER
Sbjct: 8  QPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 67

Query: 75 LSQLLSTIDADSAEAAIIRSLIMQ 99
          LSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 68 LSQLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_022952488.1 (transcription factor PRE6-like, partial [Cucurbita moschata])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 15  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 74
           +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER
Sbjct: 67  QPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 126

Query: 75  LSQLLSTIDADSAEAAIIRSLIMQ 99
           LSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 127 LSQLLSTIDADSAEAAIIRSLIMQ 150

[Close]

BLAST of CmoCh04G028870 vs. NCBI nr
Match: KAG7033162.1 (Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.6e-35
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 15  KPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 74
           +PGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER
Sbjct: 46  QPGASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSER 105

Query: 75  LSQLLSTIDADSAEAAIIRSLIMQ 99
           LSQLLSTIDADSAEAAIIRSLIMQ
Sbjct: 106 LSQLLSTIDADSAEAAIIRSLIMQ 129

[Close]

BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_022134204.1 (transcription factor PRE6 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 9.2e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G SRISDDQIIEL+SKLR LVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS
Sbjct: 10 GGSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 69

Query: 77 QLLSTIDADSAEAAIIRSLIMQ 99
          QLLSTIDADSAEAAIIRSLIMQ
Sbjct: 70 QLLSTIDADSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. NCBI nr
Match: XP_004151201.2 (transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcription factor PRE6 [Cucumis melo] >KAA0038157.1 transcription factor PRE6 [Cucumis melo var. makuwa] >KGN52451.1 hypothetical protein Csa_009099 [Cucumis sativus] >TYK02197.1 transcription factor PRE6 [Cucumis melo var. makuwa])

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-31
Identity = 77/81 (95.06%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 77
          ASRISDDQIIEL+SKLR LVPEIRHRR DKVSASKVLQETCNYIRNLHREVDDLSERLSQ
Sbjct: 11 ASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLSQ 70

Query: 78 LLSTIDADSAEAAIIRSLIMQ 99
          LLSTID+DSAEAAIIRSLIMQ
Sbjct: 71 LLSTIDSDSAEAAIIRSLIMQ 91

[Close]

BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 128.6 bits (322), Expect = 2.7e-30
Identity = 64/80 (80.00%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIRHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 76
          G+SRISDDQI +L+SKL+HL+PE+R RRSDKVSASKVLQETCNYIRNLHREVDDLS+RLS
Sbjct: 13 GSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLS 72

Query: 77 QLLSTIDADSAEAAIIRSLI 97
          +LL++ D +SAEAAIIRSL+
Sbjct: 73 ELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 77
          ASRISDDQ+I+L+SKLR  +PEI   RRSDKVSASKVLQETCNYIR LHREVD+LS+RLS
Sbjct: 12 ASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLS 71

Query: 78 QLLSTIDADSAEAAIIRSLIM 98
          QLL ++D DS EAA+IRSL+M
Sbjct: 72 QLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.1e-26
Identity = 60/81 (74.07%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEI-RHRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 77
          A RISD+Q+I+L+SKLR ++PEI + RRSDK SASKVLQETCNYIRNL+REVD+LSERLS
Sbjct: 12 APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLS 71

Query: 78 QLLSTIDADSAEAAIIRSLIM 98
          QLL ++D DS EAA+IRSL+M
Sbjct: 72 QLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 18 ASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERLS 77
          +SRISDDQI +LISKLR  +PEIR +RRS+ VSASKVLQETCNYIRNL++E DDLS+RL+
Sbjct: 13 SSRISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLT 72

Query: 78 QLLSTIDADSAEAAIIRSLI 97
          QLL +ID +S +AA+IRSLI
Sbjct: 73 QLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CmoCh04G028870 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 58/83 (69.88%), Postives = 74/83 (89.16%), Query Frame = 0


Query: 17 GASRISDDQIIELISKLRHLVPEIR-HRRSDKVSASKVLQETCNYIRNLHREVDDLSERL 76
          G SRIS+DQI +LI KL+ L+PE+R  RRSDKVSA++VLQ+TCNYIRNLHREVDDLSERL
Sbjct: 13 GTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERL 72

Query: 77 SQLLSTIDADSAEAAIIRSLIMQ 99
          S+LL+  ++D+A+AA+IRSL+ Q
Sbjct: 73 SELLA--NSDTAQAALIRSLLTQ 93

The following BLAST results are available for this feature:

BLAST of CmoCh04G028870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	3.8e-29	80.00	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q9LJX1	3.9e-26	76.54	Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1	[more]
Q9FLE9	4.3e-25	74.07	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]
B8APB5	1.4e-23	67.90	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	1.4e-23	67.90	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]

BLAST of CmoCh04G028870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GKQ6	1.3e-35	98.81	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111455160 PE=...	[more]
A0A6J1BY51	4.5e-33	96.34	transcription factor PRE6 OS=Momordica charantia OX=3673 GN=LOC111006522 PE=4 SV...	[more]
A0A5A7T970	6.4e-32	95.06	Transcription factor PRE6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KXB9	6.4e-32	95.06	Transcription regulator OS=Cucumis sativus OX=3659 GN=Csa_5G635950 PE=4 SV=1	[more]
A0A1S3CB29	6.4e-32	95.06	transcription factor PRE6 OS=Cucumis melo OX=3656 GN=LOC103498476 PE=4 SV=1	[more]

BLAST of CmoCh04G028870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548992.1	2.6e-35	98.81	transcription factor PRE6-like [Cucurbita pepo subsp. pepo] >KAG6602487.1 Transc...	[more]
XP_022952488.1	2.6e-35	98.81	transcription factor PRE6-like, partial [Cucurbita moschata]	[more]
KAG7033162.1	2.6e-35	98.81	Transcription factor PRE5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022134204.1	9.2e-33	96.34	transcription factor PRE6 [Momordica charantia]	[more]
XP_004151201.2	1.3e-31	95.06	transcription factor PRE6 [Cucumis sativus] >XP_008459306.1 PREDICTED: transcrip...	[more]

BLAST of CmoCh04G028870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	2.7e-30	80.00	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G28857.1	2.8e-27	76.54	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	3.1e-26	74.07	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G15160.1	1.7e-24	72.50	BANQUO 2	[more]
AT1G74500.1	3.7e-24	69.88	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 61..81
None	No IPR available	PANTHER	PTHR46446:SF28	TRANSCRIPTION REGULATOR	coord: 17..97
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 15..81 e-value: 5.20689E-24 score: 84.6623
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 25..65 e-value: 2.8E-5 score: 24.0
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 10..64 score: 8.778139
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 24..93 e-value: 4.3E-9 score: 38.3
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 25..83
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 17..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G028870.1	CmoCh04G028870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity