CmoCh04G028490 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G028490
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NHL domain protein
Location	Cmo_Chr04: 20339956 .. 20340414 (+)
RNA-Seq Expression	CmoCh04G028490
Synteny	CmoCh04G028490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTCCTCAATCTCCTGACCTTTCTTCCGACGTTAATGGCTTCCACACCGATGACCTTCTTCATGAGGCTGCCTTCGCCAGCCGTGGCTGCTGCTTCTGGCTTCCTTGCCTGAGGTCTAATCCATCGAAGTCCTGGTGGGAGAGGATTAGGGCTGCCGATAATGACGACGAGTGGTGGCTTCGAGGCTGGAAGAGGTTCCGCGATTGGTCCGAAATCGTTGCCGGCCCTAAATGGAAGACGTTCATTCGTCAATTTCACAAGAATCGCCATCGCCAATCTACTTACCGTTACGATCCGCTCAGTTACGCTCTCAACTTCGACGAAGGTCCAGCTCTCGACGATCCTTTCAGTGAGGACTTCATGCGCCGCGACTTCTCCATGCGATTCGCCTCCATTCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCAAGGATGGACCGTCCTTCATTTGA

mRNA sequence

ATGTCTGTTCCTCAATCTCCTGACCTTTCTTCCGACGTTAATGGCTTCCACACCGATGACCTTCTTCATGAGGCTGCCTTCGCCAGCCGTGGCTGCTGCTTCTGGCTTCCTTGCCTGAGGTCTAATCCATCGAAGTCCTGGTGGGAGAGGATTAGGGCTGCCGATAATGACGACGAGTGGTGGCTTCGAGGCTGGAAGAGGTTCCGCGATTGGTCCGAAATCGTTGCCGGCCCTAAATGGAAGACGTTCATTCGTCAATTTCACAAGAATCGCCATCGCCAATCTACTTACCGTTACGATCCGCTCAGTTACGCTCTCAACTTCGACGAAGGTCCAGCTCTCGACGATCCTTTCAGTGAGGACTTCATGCGCCGCGACTTCTCCATGCGATTCGCCTCCATTCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCAAGGATGGACCGTCCTTCATTTGA

Coding sequence (CDS)

ATGTCTGTTCCTCAATCTCCTGACCTTTCTTCCGACGTTAATGGCTTCCACACCGATGACCTTCTTCATGAGGCTGCCTTCGCCAGCCGTGGCTGCTGCTTCTGGCTTCCTTGCCTGAGGTCTAATCCATCGAAGTCCTGGTGGGAGAGGATTAGGGCTGCCGATAATGACGACGAGTGGTGGCTTCGAGGCTGGAAGAGGTTCCGCGATTGGTCCGAAATCGTTGCCGGCCCTAAATGGAAGACGTTCATTCGTCAATTTCACAAGAATCGCCATCGCCAATCTACTTACCGTTACGATCCGCTCAGTTACGCTCTCAACTTCGACGAAGGTCCAGCTCTCGACGATCCTTTCAGTGAGGACTTCATGCGCCGCGACTTCTCCATGCGATTCGCCTCCATTCCGGCCTCCGCCAAGTCGTCCATGGACCTCGGCAAGGATGGACCGTCCTTCATTTGA

Protein sequence

MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEWWLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIPASAKSSMDLGKDGPSFI

Homology

[Close]

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL
Match: A0A6J1HFG4 (uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC111462557 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 7.5e-88
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW
Sbjct: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL
Match: A0A6J1JTQ3 (uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.2e-85
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSV QSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSK+WWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKTWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFD+GPALDDPF E
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDDGPALDDPFRE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL
Match: A0A0A0KRY7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.4e-72
Identity = 125/152 (82.24%), Postives = 140/152 (92.11%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MS+  SPDLSSD NGF  +D LH+A FA+RGCC W+PCLRSN S+SWWERIRAADNDDEW
Sbjct: 1   MSLAHSPDLSSDENGFLHNDDLHDAVFATRGCCLWIPCLRSNSSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WL+GWKRFR+WSEIVAGPKWKTFIRQFHKNR+RQST+RYDPLSY+LNFDEGPA DDPF++
Sbjct: 61  WLKGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFTD 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DF+RRDFS RFA+IPASAKSSMDLGKD PSFI
Sbjct: 121 DFVRRDFSTRFAAIPASAKSSMDLGKDSPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL
Match: A0A1S4E267 (uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.2e-70
Identity = 123/152 (80.92%), Postives = 139/152 (91.45%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MS+ QSPD SSD NGFH++D LH+A FA+ GCCFW+PCLRSN S+SWWERIRAADNDDEW
Sbjct: 1   MSLAQSPDFSSDENGFHSND-LHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFR+WSEIVAGPKWKTFIRQFHKNR+RQST+RYDPLSY+LNFDEGPA +D F++
Sbjct: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTD 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DF+RRDFS RFA+IPASAKSSMDL KD PS I
Sbjct: 121 DFVRRDFSTRFAAIPASAKSSMDLVKDSPSLI 151

[Close]

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL
Match: A0A5A7T228 (Putative NHL domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00830 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.7e-68
Identity = 120/147 (81.63%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MS+ QSPD SSD NGFH++D LH+A FA+ GCCFW+PCLRSN S+SWWERIRAADNDDEW
Sbjct: 1   MSLAQSPDFSSDENGFHSND-LHDAVFATHGCCFWIPCLRSNSSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFR+WSEIVAGPKWKTFIRQFHKNR+RQST+RYDPLSY+LNFDEGPA +D F++
Sbjct: 61  WLRGWKRFREWSEIVAGPKWKTFIRQFHKNRNRQSTFRYDPLSYSLNFDEGPAHEDSFTD 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKD 148
           DF+RRDFS RFA+IPASAKSSMDL KD
Sbjct: 121 DFVRRDFSTRFAAIPASAKSSMDLVKD 146

[Close]

BLAST of CmoCh04G028490 vs. NCBI nr
Match: XP_022961939.1 (uncharacterized protein LOC111462557 [Cucurbita moschata])

HSP 1 Score: 332.8 bits (852), Expect = 1.6e-87
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW
Sbjct: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. NCBI nr
Match: KAG6602448.1 (hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033131.1 hypothetical protein SDJN02_07184, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 329.7 bits (844), Expect = 1.3e-86
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSV QSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. NCBI nr
Match: XP_023533538.1 (uncharacterized protein LOC111795380 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 5.0e-86
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSV QSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRS+PSKSWWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSSPSKSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. NCBI nr
Match: XP_022990588.1 (uncharacterized protein LOC111487422 [Cucurbita maxima])

HSP 1 Score: 325.5 bits (833), Expect = 2.5e-85
Identity = 148/152 (97.37%), Postives = 150/152 (98.68%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MSV QSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSK+WWERIRAADNDDEW
Sbjct: 1   MSVSQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKTWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFD+GPALDDPF E
Sbjct: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDDGPALDDPFRE 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI
Sbjct: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 152

[Close]

BLAST of CmoCh04G028490 vs. NCBI nr
Match: XP_038889212.1 (uncharacterized protein LOC120079097 [Benincasa hispida])

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 129/152 (84.87%), Postives = 141/152 (92.76%), Query Frame = 0


Query: 1   MSVPQSPDLSSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSNPSKSWWERIRAADNDDEW 60
           MS+ QSPDLSSD N FH DD LH+AAF SRGCC WLPCLRSNPS+SWWERIRAADNDDEW
Sbjct: 1   MSLAQSPDLSSDENAFHGDD-LHDAAFVSRGCCLWLPCLRSNPSQSWWERIRAADNDDEW 60

Query: 61  WLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHRQSTYRYDPLSYALNFDEGPALDDPFSE 120
           WLRGWKRFR+WSEI+AGPKWKTFIRQF+KNR+RQST+RYDPLSY+LNFDEGPA DDPFS+
Sbjct: 61  WLRGWKRFREWSEIIAGPKWKTFIRQFNKNRNRQSTFRYDPLSYSLNFDEGPAHDDPFSD 120

Query: 121 DFMRRDFSMRFASIPASAKSSMDLGKDGPSFI 153
           D +RRDFS RFA+IPASAKSSMDLGKDGP FI
Sbjct: 121 DLVRRDFSTRFAAIPASAKSSMDLGKDGPPFI 151

[Close]

BLAST of CmoCh04G028490 vs. TAIR 10
Match: AT5G14890.1 (NHL domain-containing protein )

HSP 1 Score: 141.0 bits (354), Expect = 8.1e-34
Identity = 75/160 (46.88%), Postives = 96/160 (60.00%), Query Frame = 0


Query: 10  SSDVNGFHTDDLLHEAAFASRGCCFWLPCLRSN----PSKS-WWERIRAADN---DDEWW 69
           S  ++     D +HEA FA RGCCF LPCL S+    P+ S WW+RIR  D    D+ WW
Sbjct: 588 SFPISEMDATDEMHEAMFAKRGCCFILPCLGSSQPSGPNGSVWWQRIRTVDKLEPDERWW 647

Query: 70  LRGWKRFRDWSEIVAGPKWKTFIRQFHK------------NRHRQSTYRYDPLSYALNFD 129
           + GW + R+WSEIVAGPKWKTFIR+F +            NR    ++RYD  SY+LNFD
Sbjct: 648 VSGWMKMREWSEIVAGPKWKTFIRRFGRNHCCNGGIDGGCNRPEHVSFRYDSWSYSLNFD 707

Query: 130 EGPALDDPFSEDFMRRDFSMRFA--SIPASAKSSMDLGKD 148
           +G      F ++F  RD+SMRFA  S+P S K S+D   D
Sbjct: 708 DGKQTGH-FEDEFPYRDYSMRFAAPSLPVSTKCSIDFDND 746

[Close]

BLAST of CmoCh04G028490 vs. TAIR 10
Match: AT3G01430.1 (BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-32
Identity = 71/165 (43.03%), Postives = 94/165 (56.97%), Query Frame = 0


Query: 18  TDDLLHEAAFASRGCCFWLPCLRSNPSKS-----WWERIRAADN---DDEWWLRGWKRFR 77
           TDD +HEA FA RGCCF +PCL S+   +     WW+RI   D    D+ WW+RGW+R R
Sbjct: 14  TDD-MHEALFAKRGCCFLMPCLASSQPSTRGGSVWWQRITTVDKLEPDERWWIRGWRRMR 73

Query: 78  DWSEIVAGPKWKTFIRQFHKNR-------------------------HRQSTYRYDPLSY 137
           +WSE+VAGP+WKT+IR+F ++                            Q  +RYD LSY
Sbjct: 74  EWSELVAGPRWKTYIRRFGRSNCCGGGGGRVGNSSGGCGGGAMPNRSSDQGKFRYDQLSY 133

Query: 138 ALNFDEGPALDDPFSEDFMRRDFSMRFA--SIPASAKSSMDLGKD 148
           +LNFD+G      F ++F  RD+SMRFA  S+P S K S+D   D
Sbjct: 134 SLNFDDGNQTGH-FDDEFPYRDYSMRFAAPSLPVSTKCSIDFDSD 176

[Close]

BLAST of CmoCh04G028490 vs. TAIR 10
Match: AT3G48020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-20
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 0


Query: 38  CLRSNPSKSWWERI-RAADNDDEWWLRGWKRFRDWSEIVAGPKWKTFIRQFHKNRHR--- 97
           C  +    SWW+RI R    +  WW+R + + R+WSEIVAGP+WKTFIR+F+++  R   
Sbjct: 15  CCSTTVKSSWWQRIHRNNHQEPRWWVRAFLKIREWSEIVAGPRWKTFIRRFNRDPRRGQD 74

Query: 98  ---QSTYRYDPLSYALNFDEGPALDDPFSEDFMRRDFSMRFASIP-ASAKSSMDLGKD 148
                 +RYDP+SY L+F++    DD  +     R FSMR+AS+P AS KS   +  D
Sbjct: 75  WDDSDKFRYDPVSYTLSFEDEDKDDDDEAGVGGVRSFSMRYASVPVASGKSPAVISVD 132

[Close]

BLAST of CmoCh04G028490 vs. TAIR 10
Match: AT5G62865.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). )

HSP 1 Score: 90.9 bits (224), Expect = 9.6e-19
Identity = 53/136 (38.97%), Postives = 74/136 (54.41%), Query Frame = 0


Query: 24  EAAFASRGCCFWLPCLRSNPSK-----SWWERIRAAD---------NDDEWWLRGWKRFR 83
           +  +  R CCF  P  R + S      S W RIR  D         ++  WW+R   + R
Sbjct: 13  DTRYDQRCCCF--PSFRRSRSSTAVGYSSWGRIRTVDDSNHSGDHGDEPRWWIRASLKIR 72

Query: 84  DWSEIVAGPKWKTFIRQFHKNRHR------QSTYRYDPLSYALNFDEGPALDDPFSEDFM 136
           +WSEIVAGP+WKTFIR+F+++  R         ++YDPLSY+LNFD     DD   ++++
Sbjct: 73  EWSEIVAGPRWKTFIRRFNRDPRRGRDWDASEKFQYDPLSYSLNFD-----DDDEEDEYV 132

[Close]

BLAST of CmoCh04G028490 vs. TAIR 10
Match: AT5G25240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-08
Identity = 38/126 (30.16%), Postives = 54/126 (42.86%), Query Frame = 0


Query: 9   LSSDVNGFHTDDLLHEAAFASRGCCF--------WLPCLRSNPSKSWWERIRAADNDDEW 68
           +++D     +DD    AAF   GC +        W      + S+  W      +    W
Sbjct: 1   MATDRENLLSDDYEETAAFC--GCGYFRSFSFTRWRRGDDESRSRGGWSGCLQEERRGNW 60

Query: 69  WLRGWKRFRDWSEIVAGPKWKTFIRQF---HKNRHRQSTYRYDPLSYALNFDEGPALDDP 124
                K  ++ SE +AGPKWK FIR F    K   R   + YD  +Y+LNFD+G    D 
Sbjct: 61  GSEKLKGLKEISEKIAGPKWKNFIRSFSSGRKKMRRDVDFTYDLKNYSLNFDDGGDGKDS 120

The following BLAST results are available for this feature:

BLAST of CmoCh04G028490 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G028490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HFG4	7.5e-88	100.00	uncharacterized protein LOC111462557 OS=Cucurbita moschata OX=3662 GN=LOC1114625...	[more]
A0A6J1JTQ3	1.2e-85	97.37	uncharacterized protein LOC111487422 OS=Cucurbita maxima OX=3661 GN=LOC111487422...	[more]
A0A0A0KRY7	4.4e-72	82.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G630870 PE=4 SV=1	[more]
A0A1S4E267	3.2e-70	80.92	uncharacterized protein LOC107991628 OS=Cucumis melo OX=3656 GN=LOC107991628 PE=...	[more]
A0A5A7T228	1.7e-68	81.63	Putative NHL domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]

BLAST of CmoCh04G028490 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961939.1	1.6e-87	100.00	uncharacterized protein LOC111462557 [Cucurbita moschata]	[more]
KAG6602448.1	1.3e-86	99.34	hypothetical protein SDJN03_07681, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023533538.1	5.0e-86	98.68	uncharacterized protein LOC111795380 [Cucurbita pepo subsp. pepo]	[more]
XP_022990588.1	2.5e-85	97.37	uncharacterized protein LOC111487422 [Cucurbita maxima]	[more]
XP_038889212.1	2.8e-73	84.87	uncharacterized protein LOC120079097 [Benincasa hispida]	[more]

BLAST of CmoCh04G028490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14890.1	8.1e-34	46.88	NHL domain-containing protein	[more]
AT3G01430.1	2.6e-32	43.03	BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:...	[more]
AT3G48020.1	1.0e-20	42.37	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G62865.1	9.6e-19	38.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G25240.1	4.5e-08	30.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47076	NHL DOMAIN PROTEIN	coord: 18..151
None	No IPR available	PANTHER	PTHR47076:SF1	NHL DOMAIN PROTEIN	coord: 18..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G028490.1	CmoCh04G028490.1	mRNA