CmoCh04G027990 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G027990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 20117223 .. 20117645 (-)
RNA-Seq Expression	CmoCh04G027990
Synteny	CmoCh04G027990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

mRNA sequence

ATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Coding sequence (CDS)

ATGCCGGACCTCGACACAACCGCGCCGCCAGGCAAGTTCCGGTACCGGAGGCTGAGATACAGCGAGGAATTTGAGGAGGCGTTTGGAAGATCGAGGCGAGGAGAAGCGAGGAGGAGGAGGAGATTCGTCGGAAGATCGAAGCGGTGGTTCAGAATCAGAAGGGCTTCGATTGGGAGGAGGTTGAAGAAGCTCAGAGTTCCAAGCCTGAGAAAGCTGTTGAGAAGGAAATCGCGGCTGGTGACGGCCATGAGAGGCTCGATTGCGAAGGTTGTGAAGAGGTTTAGGGAAGGGGAAGCGTATTTGGGGGATCTTTTTGCTGGAAATTATTTGTTTCTTCAGGTGAATCCCAGCTCCATCAAATGCCATAAAAATCACCATTCTGCCCTTCAAAATTTCGCCCCAACTTATTCCCTCAACCTCTAA

Protein sequence

MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIKCHKNHHSALQNFAPTYSLNL

Homology

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BLAST of CmoCh04G027990 vs. ExPASy TrEMBL
Match: A0A6J1E2Z5 (uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC111430312 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.2e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR
Sbjct: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136

Query: 121 CHKNHHSALQNFAPTYSLNL 141
           CHKNHHSALQNFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156

[Close]

BLAST of CmoCh04G027990 vs. ExPASy TrEMBL
Match: A0A6J1JM01 (uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.2e-65
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE  RRRRFVGRSKRWF+IRRASIGRR
Sbjct: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE-ERRRRFVGRSKRWFKIRRASIGRR 60

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 61  LKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120

Query: 121 CHKNHHSALQNFAPTYSLNL 141
           CHKNHHSAL NFAPTYSLNL
Sbjct: 121 CHKNHHSALPNFAPTYSLNL 139

[Close]

BLAST of CmoCh04G027990 vs. ExPASy TrEMBL
Match: A0A0A0KSD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.3e-41
Identity = 106/151 (70.20%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIR------R 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR G     R+   R + WFR+R       
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSS 60

Query: 61  ASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQV 120
            SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQV
Sbjct: 61  LSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQV 120

Query: 121 NPSSIKCHKNHHSALQ-------NFAPTYSL 139
           NPSS+KC KNHH   Q       NF  TYSL
Sbjct: 121 NPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmoCh04G027990 vs. ExPASy TrEMBL
Match: A0A1S4E272 (uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.8e-40
Identity = 105/149 (70.47%), Postives = 118/149 (79.19%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKR-WFRIR------ 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR G    R+R+  R++R WFR+R      
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSRGGGGGIRKRW--RTRRWWFRMRMRKGSS 60

Query: 61  RASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQ 120
             SIGRRLKKLR+PSLRKL+RRK RLV AMRGSIAKV+KRFR+GEAYLGDLFAGNYLFLQ
Sbjct: 61  SLSIGRRLKKLRIPSLRKLMRRKWRLVNAMRGSIAKVLKRFRDGEAYLGDLFAGNYLFLQ 120

Query: 121 VNPSSIKCHKNHHSA----LQNFAPTYSL 139
           VNPSS+KC KNHH      ++NF  TYSL
Sbjct: 121 VNPSSMKCMKNHHQQHGFDVRNFTQTYSL 146

[Close]

BLAST of CmoCh04G027990 vs. ExPASy TrEMBL
Match: A0A6J1FMJ7 (uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC111445317 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.6e-38
Identity = 99/139 (71.22%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           M DL+  A   KFRYRRLR+S+E E AF RSR GE   +RRF G     FR+RRASIGRR
Sbjct: 53  MADLE-IASAAKFRYRRLRHSDELESAFARSRLGE---QRRFGG-----FRMRRASIGRR 112

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLR+PSLRKL  RKSRLV AM GSI+KV+KRFR+GEAYLGDLFAGNYLFLQ+NPSSIK
Sbjct: 113 LKKLRIPSLRKLF-RKSRLVNAMGGSISKVLKRFRDGEAYLGDLFAGNYLFLQINPSSIK 172

Query: 121 CHKNHHS-ALQNFAPTYSL 139
           C  NHH   LQNF PT+SL
Sbjct: 173 CLANHHQYPLQNFPPTFSL 181

[Close]

BLAST of CmoCh04G027990 vs. NCBI nr
Match: XP_022922294.1 (uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothetical protein SDJN02_07132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 8.7e-69
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR
Sbjct: 17  MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 76

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 77  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 136

Query: 121 CHKNHHSALQNFAPTYSLNL 141
           CHKNHHSALQNFAPTYSLNL
Sbjct: 137 CHKNHHSALQNFAPTYSLNL 156

[Close]

BLAST of CmoCh04G027990 vs. NCBI nr
Match: XP_022990096.1 (uncharacterized protein LOC111487096 [Cucurbita maxima])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE  RRRRFVGRSKRWF+IRRASIGRR
Sbjct: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGE-ERRRRFVGRSKRWFKIRRASIGRR 60

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAM+GSI+KVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 61  LKKLRVPSLRKLLRRKSRLVTAMKGSISKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120

Query: 121 CHKNHHSALQNFAPTYSLNL 141
           CHKNHHSAL NFAPTYSLNL
Sbjct: 121 CHKNHHSALPNFAPTYSLNL 139

[Close]

BLAST of CmoCh04G027990 vs. NCBI nr
Match: XP_023551709.1 (uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256.1 bits (653), Expect = 1.7e-64
Identity = 136/140 (97.14%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRR 60
           MPDLDTTA PGKFRYRRLRYSEEFEEAFGRSR GE  RRRRFVGRSKRWFRIRRASIGRR
Sbjct: 1   MPDLDTTAAPGKFRYRRLRYSEEFEEAFGRSRGGE-ERRRRFVGRSKRWFRIRRASIGRR 60

Query: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120
           LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK
Sbjct: 61  LKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSIK 120

Query: 121 CHKNHHSALQNFAPTYSLNL 141
           CHKNHHSALQNFAPTYSLNL
Sbjct: 121 CHKNHHSALQNFAPTYSLNL 139

[Close]

BLAST of CmoCh04G027990 vs. NCBI nr
Match: XP_038889218.1 (uncharacterized protein LOC120079105 [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 8.8e-45
Identity = 108/140 (77.14%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRA-SIGR 60
           M DL+ TAP  KFRYRRL YSEEFEEAFGR R GE     R + RSKRWFRIR+A SIGR
Sbjct: 1   MADLE-TAPAAKFRYRRLSYSEEFEEAFGRYRGGE-----RILKRSKRWFRIRKASSIGR 60

Query: 61  RLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSI 120
           RLKKLR+PSLRKLLRRKS+LV AMRGSI+K++KRFR+GEAYLGDLFAGNYLFLQVNPSS+
Sbjct: 61  RLKKLRIPSLRKLLRRKSQLVNAMRGSISKILKRFRDGEAYLGDLFAGNYLFLQVNPSSM 120

Query: 121 KCHKNHHS-ALQNFAPTYSL 139
           KC KNHH   LQNF  TYSL
Sbjct: 121 KCLKNHHRFPLQNFPQTYSL 134

[Close]

BLAST of CmoCh04G027990 vs. NCBI nr
Match: XP_011655383.1 (uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical protein Csa_009087 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.7e-40
Identity = 106/151 (70.20%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MPDLDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIR------R 60
           M DL+ TA  GKFRYRRLRYSEEFEEAFGRSR G     R+   R + WFR+R       
Sbjct: 1   MADLE-TASAGKFRYRRLRYSEEFEEAFGRSREGGGEGIRKRWRRRRWWFRMRMRKGSSS 60

Query: 61  ASIGRRLKKLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQV 120
            SIGRRLKKLR+PSLRKLLRRK RLV AMRGSIAKVVKRFR+GEAYLGDLFAGNYLFLQV
Sbjct: 61  LSIGRRLKKLRIPSLRKLLRRKWRLVNAMRGSIAKVVKRFRDGEAYLGDLFAGNYLFLQV 120

Query: 121 NPSSIKCHKNHHSALQ-------NFAPTYSL 139
           NPSS+KC KNHH   Q       NF  TYSL
Sbjct: 121 NPSSMKCLKNHHHHQQQHGFDVRNFPQTYSL 150

[Close]

BLAST of CmoCh04G027990 vs. TAIR 10
Match: AT5G14410.1 (unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-07
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 0


Query: 4   LDTTAPPGKFRYRRLRYSEEFEEAFGRSRRGEARRRRRFVGRSKRWFRIRRASIGRRLK- 63
           +D++       Y+RL      ++ FG +     RRR  F   S R+ R+      RR++ 
Sbjct: 1   MDSSPKITNLPYKRLSLE---DDVFGET----TRRRSSFY--SYRFKRVVSLGGRRRIRV 60

Query: 64  KLRVPSLRKLLRRKSRLVTAMRGSIAKVVKRFREGEAYLGDLFAGNYLFLQVNPSSI 120
           ++++  LR  +R+K+  V   +  I K++KR +E +++ GDLFAGNYLF+QVNPSS+
Sbjct: 61  RVKIRRLRGFVRKKANRV---KTGILKILKRLKESQSHFGDLFAGNYLFMQVNPSSL 105

The following BLAST results are available for this feature:

BLAST of CmoCh04G027990 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G027990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2Z5	4.2e-69	100.00	uncharacterized protein LOC111430312 OS=Cucurbita moschata OX=3662 GN=LOC1114303...	[more]
A0A6J1JM01	8.2e-65	95.71	uncharacterized protein LOC111487096 OS=Cucurbita maxima OX=3661 GN=LOC111487096...	[more]
A0A0A0KSD1	8.3e-41	70.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G517900 PE=4 SV=1	[more]
A0A1S4E272	1.8e-40	70.47	uncharacterized protein LOC107991631 OS=Cucumis melo OX=3656 GN=LOC107991631 PE=...	[more]
A0A6J1FMJ7	8.6e-38	71.22	uncharacterized protein LOC111445317 OS=Cucurbita moschata OX=3662 GN=LOC1114453...	[more]

BLAST of CmoCh04G027990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922294.1	8.7e-69	100.00	uncharacterized protein LOC111430312 [Cucurbita moschata] >KAG7033079.1 hypothet...	[more]
XP_022990096.1	1.7e-64	95.71	uncharacterized protein LOC111487096 [Cucurbita maxima]	[more]
XP_023551709.1	1.7e-64	97.14	uncharacterized protein LOC111809563 [Cucurbita pepo subsp. pepo]	[more]
XP_038889218.1	8.8e-45	77.14	uncharacterized protein LOC120079105 [Benincasa hispida]	[more]
XP_011655383.1	1.7e-40	70.20	uncharacterized protein LOC105435522 [Cucumis sativus] >KGN51342.1 hypothetical ...	[more]

BLAST of CmoCh04G027990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14410.1	2.0e-07	35.04	unknown protein; Has 23 Blast hits to 23 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36795	OS01G0938400 PROTEIN	coord: 8..128
None	No IPR available	PANTHER	PTHR36795:SF2	OS01G0938400 PROTEIN	coord: 8..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G027990.1	CmoCh04G027990.1	mRNA