CmoCh04G027770 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G027770
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 20038821 .. 20041026 (-)
RNA-Seq ExpressionCmoCh04G027770
SyntenyCmoCh04G027770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAGTGATTACAAGTTCATTTATTGTCCCTAGCGTCTAGGAACAGAACACTGGATGATTTCTTTGGTGCATAATTGTAAGAACGATTTGAATAGAGTTTTATCTAATGTGGAAATGCTTTGAACACAATGGGTAAGGGATGATCATTTGTTTGACATAACAGAAATGAAGATTACATATGGCTGTTAAGCCTTTCCTGAGAGAATGAATAGCAAATTCCCCTCACTTGCATCTGCATACTACTTAGATTAGATGGGCAGCAAGTAACGAAACTCGGATTCATAAGGTTGAATTTCCACCATTTTATGGATGGGAGATTTAGTTTCGCCGTTTAAACACTCCATTATCGTCCTCTTCAAGCTTGCAGAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTGGTGTATACACCCTTAACTTCATAAAGTTTCAACAGTCCGTCAATTTCTTTCAAAGATTCATTGATGCTCATAAAATATGCAGAAAAAGTAAGATACTTACTGCAGGAGAAGACCAACTGCCCCTGCAGAGAGCAAATGTCACATTTGGTTCTGGATATCCTAAGCCATAGGCATGTCGAAGCAACATTTCCTTCTCATCCACAGGCTTCAAAGGGAACAACATATGCAATGAACCATCGTCATGTACTGATAGTAGTTTTGAAATATAAACTACAAGACAGGTAGCGCTTACATATTTCGTTTCATTTTGATGCCGAAGAATGAAATGTTCAATAGCCAGAGCATTGAGAACTACCCCCCCAACGTTAAGAGCAGCCTGCAGGACGGAAAAATCACATAAAGCTTCAGAGTTGTTTTGGTATTTAGGACTTGGGACATTGGCATATACCTTGTTCATCAAAGCCAAGAGTTTATCAGTTGTCGATGGCAGCCCATGTTCAAGAAATGCCTGAAATTTTGGTGATTACAGTCAGTATATTCAAATAGGATCATAGCTGCAATTCATCTGTGTCTTACATGTCTTACAGTACATGCATTATAGAGGAGTTATAAATGTTTATCCAGAATGCCAACTTCTGTTTGTACGTCAAAAAGGTCAACTCCACATTGCTCAGCTTATGAATAAGAATCCTGCAAAGATCAGGAAGCAAAAGAACAATTTGAAGTTTCAACGCTATGTGGCAATCTGGTTAAACAGGCTGCTACTCACCTCAACTTTCTGATTGACGTCGAGCACTCGGGCAGTCTACCGATGTCGAAAGACGTTCTCGTAATGTGGATGAAGTTCTTATAAGGGCCAAAGTTCCTCACACCGCCTTCTGAGTCGAGCAGTAGTATACTATAAGGATTGGGATTGGACGAGGTATAATCAAAAGACAAAGTGAGCTGAGGCGCTTTGCAACTGAAGCTGGTTTTTGCAATACAGCGCTTTGAGCTGATGCAGGAAAGGCCATGTTTTGGTATATTGGGTGAAGTTTTGCTGCTGTATGAAGGCTGATTTAGATCAACATAAATGCCAATGAGACACTTAATCAACTGTTCTGAAAGCTCATTTGGTGTTTCACTGCAAGTTTCTTTCTCTAATTGGCTCTGCTTTCGGCTTCTCGTTGCATTCTTCCTTGGTGGAAGACACTGGATGTCAGAAGCAGCACTTGAAGAGAATCTCCTCTCACTCAGCATTATATCTTTTCTAAGTTCATCATAATGGTGGGATCTGGATCGCTGGCCAGTAAGAACAGAGCTGTTATTAATTTGAGGTCCATTCAAGAGCAGGTTGTGCTGCCAAAGGCATCTAAGCCTCTGCTGAATTTCCCACTCCTTATTCTGTTCCCTCTCTTTGTACAAGTTCAACTTCAGCTCTTCAACCTTTCTTTCTAGCCTTTCAATCTCTCTCTCCACAACTCCCAATTCTTCCATGAGCACCTGCATCTACAAAGAACAGAGAATCAAGAAATCCCTTATGCATTACTATTGCTTAAACCAATGCAAAATGGATGTACCTGAGGTGGTAAAGAAGAGGAAACATGGGGATGGGACAGGAAAGGGCCGTGAAGAGCCCAATGCAGAGCCTTATTGA

mRNA sequence

ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTGGAGAAGACCAACTGCCCCTGCAGAGAGCAAATGTCACATTTGGTTCTGGATATCCTAAGCCATAGGCATGTCGAAGCAACATTTCCTTCTCATCCACAGGCTTCAAAGGGAACAACATATGCAATGAACCATCGTCATTTCAACTTCAGCTCTTCAACCTTTCTTTCTAGCCTTTCAATCTCTCTCTCCACAACTCCCAATTCTTCCATGAGCACCTGCATCTACAAAGAACAGAGAATCAAGAAATCCCTTATGCATTACTATTGCTTAAACCAATGCAAAATGGATGTACCTGAGGTGGTAAAGAAGAGGAAACATGGGGATGGGACAGGAAAGGGCCGTGAAGAGCCCAATGCAGAGCCTTATTGA

Coding sequence (CDS)

ATGGAGACTGGTTGTCTGTACCCCAACTCTTTAAGCGAGGAAGTTGGCTATAAATCCACTCCAACAGTGATTCCATGTCGTCTGCAAAATCTTTCATGTGCCATTGAAGAAGCTTCGGCACCATTATCTTCTTCTTGCTCGTCATCCCCACCGACGCTTCCAGATACTCGACTTTTGCCATCCCCAACTCGTTCACCACTTCCTCTGGAGAAGACCAACTGCCCCTGCAGAGAGCAAATGTCACATTTGGTTCTGGATATCCTAAGCCATAGGCATGTCGAAGCAACATTTCCTTCTCATCCACAGGCTTCAAAGGGAACAACATATGCAATGAACCATCGTCATTTCAACTTCAGCTCTTCAACCTTTCTTTCTAGCCTTTCAATCTCTCTCTCCACAACTCCCAATTCTTCCATGAGCACCTGCATCTACAAAGAACAGAGAATCAAGAAATCCCTTATGCATTACTATTGCTTAAACCAATGCAAAATGGATGTACCTGAGGTGGTAAAGAAGAGGAAACATGGGGATGGGACAGGAAAGGGCCGTGAAGAGCCCAATGCAGAGCCTTATTGA

Protein sequence

METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLPSPTRSPLPLEKTNCPCREQMSHLVLDILSHRHVEATFPSHPQASKGTTYAMNHRHFNFSSSTFLSSLSISLSTTPNSSMSTCIYKEQRIKKSLMHYYCLNQCKMDVPEVVKKRKHGDGTGKGREEPNAEPY
Homology
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BLAST of CmoCh04G027770 vs. NCBI nr
Match: KAG7033059.1 (hypothetical protein SDJN02_07112, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP 60
          METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP
Sbjct: 1  METGCLYPNSLSEEVGYKSTPTVIPCRLQNLSCAIEEASAPLSSSCSSSPPTLPDTRLLP 60

Query: 61 SPTRSPLPL 70
          SPTRSPLPL
Sbjct: 61 SPTRSPLPL 69

The following BLAST results are available for this feature:
BLAST of CmoCh04G027770 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027770 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027770 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033059.14.1e-29100.00hypothetical protein SDJN02_07112, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh04G027770 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G027770.1CmoCh04G027770.1mRNA