CmoCh04G027330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G027330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L23, chloroplastic
Location	Cmo_Chr04: 19796533 .. 19798521 (+)
RNA-Seq Expression	CmoCh04G027330
Synteny	CmoCh04G027330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTTCGCAACTGCGGAAACCTAGCCTTCCAGATAGCAGCTGTTCGTCTGGGTAAGGACCTTTTATCTGCTTCACTTCCTCCTAAAATATCGATAGCTGATTGTTCGTTCTTAGTGTTTTTGAGTTTGTATATGCTGCCATTACTTGGATTCGTATGCATAGTCTAAGATTTCGTTAGTATTTCTCTTGTTAATTTGTTGAGAGTTTTCTGCAATCCTTGATATATATTTCCGTCGTTTCTATTCTCAATAGGTTGGAGTAGTGATTAGGTAGAGGATTCTGCAATGGCTCCAAAAGGTAAGTTATCGATTTCTCTCTCAAACAGTTATCGGTGGCTCTGTTTATAACATTGTGTATTTAGAGTTGGATATCTGCTACACATTCTTTTCCGTCTAATTTCATTTCTCATGACCGCCGTTCGATATTAACCAGATATTATCGTAAGAACAAAATAACAAGATCTGAGTAATCTGTTTAGACTTTAGTCAGCGGGTTACTGACTTCAAACAAAAGGTTTGCTTGATTCTCATAGTCTCGCCTGTTTTCTTTTCTGGTCTGGTTAGCTCATTATTCCAAACAGATTGTGTAGGGCCAAAATCGCAAAATGGCGATTTGAAGTTTATTAATAGTTTTATCATTTTTATTAACTATGTTATTAAGTCTAATAAAATTTGTAGAAGATAGGTGTTCTAGTTATCAAGTGGTAGGTTTGTGAGATATTGAGTTTTATGGACTAAATTAATTATATTATTTTTATGAAATGGATGCGCTATGACTTTGCTGAAGTAAGTTTTATTTAATAAATTACTCGGTTTAATGAAATTAATATCAAATTGATACTATCAAATGAGTGGATAACCTGCTCTTTTTTTGAATATCCTAGGTCCAGTTTGACAAAAACTTAAGCATAATTTTTCAAAACCAAAAACCCATTGGTTATCGAACATGGCCGTGTTTCCTTATCTTTTCTTCATTATTTGATACATTTTGCCTGCGTTTCTCCAGAAATTTATGTCTTTGATCTGAAATTTTTTTCCTTCTGAAATAGGATTGTTTTTTAAAACTGTTACTCATTAATAGAATAGTACGCATGCATGGTGGAACTTGGCCTAATCAAGTTGAATTGGATTTTTTTCTATCATAATAAGAGATTGGGGTGCATGATAATGATAATCAGTCATTTATATGTGGTTCCATTGGGTAACAAACATCTTTACCACATGCATCTACGGTTGAAATCAAGAACGCCCACCTAAGAAATCGGATACGTGATTAGTTTTAAGTGATTAAATCAGGCCTGATAGATACCTATCTTTTCCCTCAGCTGACAGCTCCAAGAAGGCCGATCCTAAGGCTCAAGCCTTGAAAGCTGCGAAGGCAGTTAAATCAGGTCCAACATTTAAGAAAGCAAAGAAGATCAGGACATCTGTCACATTTCACCGGCCGAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATATCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAAGACAACAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGTGAACACGTTGATCAGGTAATCTTATTCAAGCATTCCCATAGTTTCTTCTTAGAATATTGAGTTGGGCTGTCTTGTTGATAATAAGCTGATTAGGCAGTCTCATTTTATCACCATATGTTTGCGAGTCACCTTATGAATAAAATTAAACACTTTGATGATGATGATCGTATAACTGTAATTTATATTGAAGTTGTGTTACACCTTGATGACTGTGTTTTATATAATAATTGCAGGCCTGATGGAACCAAGAAGGCGTATGTTAGGCTGACTCCCGATTACGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

mRNA sequence

CGTCTTCGCAACTGCGGAAACCTAGCCTTCCAGATAGCAGCTGTTCGTCTGGGTTGGAGTAGTGATTAGGTAGAGGATTCTGCAATGGCTCCAAAAGCTGACAGCTCCAAGAAGGCCGATCCTAAGGCTCAAGCCTTGAAAGCTGCGAAGGCAGTTAAATCAGGTCCAACATTTAAGAAAGCAAAGAAGATCAGGACATCTGTCACATTTCACCGGCCGAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATATCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAAGACAACAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGCAGTCTCATTTTATCACCATATGTTTGCGAGTCACCTTATGAATAAAATTAAACACTTTGATGATGATGATCGTATAACTGTAATTTATATTGAAGTTGTGTTACACCTTGATGACTGTGTTTTATATAATAATTGCAGGCCTGATGGAACCAAGAAGGCGTATGTTAGGCTGACTCCCGATTACGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Coding sequence (CDS)

ATGGCTCCAAAAGCTGACAGCTCCAAGAAGGCCGATCCTAAGGCTCAAGCCTTGAAAGCTGCGAAGGCAGTTAAATCAGGTCCAACATTTAAGAAAGCAAAGAAGATCAGGACATCTGTCACATTTCACCGGCCGAAGACATTGAAGAAGGATAGAAATCCCAAGTATCCACGTATTAGTGCTACTCCAAGGAACAAGTTGGACCAGTATCAGATTCTTAAATATCCTTTGACTACTGAGTCTGCAATGAAGAAGATCGAAGACAACAATACTTTGGTTTTCATTGTGGACATTCGTGCTGATAAGAAGAAGATCAAGGATGCCGTGAAGAAGATGTATGACATCCAGACCAAGAAAGCAGTCTCATTTTATCACCATATGTTTGCGAGTCACCTTATGAATAAAATTAAACACTTTGATGATGATGATCGTATAACTGTAATTTATATTGAAGTTGTGTTACACCTTGATGACTGTGTTTTATATAATAATTGCAGGCCTGATGGAACCAAGAAGGCGTATGTTAGGCTGACTCCCGATTACGATGCTTTGGATGTTGCAAACAAGATTGGAATCATCTAA

Protein sequence

MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPDYDALDVANKIGII

Homology

[Close]

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot
Match: Q9AT35 (60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.0e-59
Identity = 135/195 (69.23%), Postives = 141/195 (72.31%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPT-FKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KK+D KAQALK AKAVKSG T FKK KKIRTSVTFHRP+TL KDRNPKYPR
Sbjct: 1   MSPAKVDVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+KKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot
Match: Q07761 (60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.3e-57
Identity = 134/195 (68.72%), Postives = 139/195 (71.28%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP KAD SKK+DPKAQA K AKAVKSG T  KK++KIRT VTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPAKADPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA  RNKLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISAPGRNKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot
Match: O22644 (60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.9e-57
Identity = 133/195 (68.21%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTF--KKAKKIRTSVTFHRPKTLKKDRNPKYPR 60
           MAP A  +KK D KAQALK AKAVKSG +   KKAKKIRTSVTFHRPKTLKKDRNPKYPR
Sbjct: 1   MAPPAKVAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPR 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISA PRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIK AVKKMYDIQTK
Sbjct: 61  ISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALD+ANKIGII
Sbjct: 181 PDYDALDIANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot
Match: Q8LD46 (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-56
Identity = 132/195 (67.69%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot
Match: Q9M3C3 (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.2e-56
Identity = 132/195 (67.69%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL
Match: A0A6J1JN21 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487327 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 147/193 (76.17%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL
Match: A0A6J1E3W3 (50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430563 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 1.3e-65
Identity = 147/193 (76.17%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL
Match: A0A6J1JKM4 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487755 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 5.6e-64
Identity = 142/193 (73.58%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD++KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGI+
Sbjct: 181 YDALDVANKIGIV 152

[Close]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL
Match: A0A6J1K8U2 (50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111491145 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.6e-64
Identity = 146/194 (75.26%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVKSGPTF KKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 AVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTP 180
             +                                           RPDGTKKAYVRLTP
Sbjct: 121 VNTL-----------------------------------------IRPDGTKKAYVRLTP 153

Query: 181 DYDALDVANKIGII 194
           DYDALDVANKIGII
Sbjct: 181 DYDALDVANKIGII 153

[Close]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL
Match: A0A0A0KQU4 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264270 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.6e-64
Identity = 143/193 (74.09%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD +KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. NCBI nr
Match: XP_022922609.1 (60S ribosomal protein L23a-like [Cucurbita moschata] >XP_022990476.1 60S ribosomal protein L23a-like isoform X1 [Cucurbita maxima] >XP_023541243.1 60S ribosomal protein L23a-like [Cucurbita pepo subsp. pepo] >KAG7033024.1 60S ribosomal protein L23a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 259.2 bits (661), Expect = 2.8e-65
Identity = 147/193 (76.17%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. NCBI nr
Match: KAG6602342.1 (60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 257.7 bits (657), Expect = 8.1e-65
Identity = 146/193 (75.65%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKADSSKKADPKAQALKAAKAVKSGPTFKK KKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKTKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. NCBI nr
Match: XP_022991052.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 253.8 bits (647), Expect = 1.2e-63
Identity = 142/193 (73.58%), Postives = 147/193 (76.17%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD++KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRP+TLKKDRNPKYPRIS
Sbjct: 1   MAPKADNTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPRTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
           ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGI+
Sbjct: 181 YDALDVANKIGIV 152

[Close]

BLAST of CmoCh04G027330 vs. NCBI nr
Match: XP_004140408.1 (60S ribosomal protein L23a isoform X1 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 143/193 (74.09%), Postives = 145/193 (75.13%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60
           MAPKAD +KKADPKAQALK AKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS
Sbjct: 1   MAPKADMTKKADPKAQALKTAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRIS 60

Query: 61  ATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKA 120
            TPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 
Sbjct: 61  VTPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKV 120

Query: 121 VSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTPD 180
            +                                           RPDGTKKAYVRLTPD
Sbjct: 121 NTL-----------------------------------------IRPDGTKKAYVRLTPD 152

Query: 181 YDALDVANKIGII 194
           YDALDVANKIGII
Sbjct: 181 YDALDVANKIGII 152

[Close]

BLAST of CmoCh04G027330 vs. NCBI nr
Match: XP_022995723.1 (60S ribosomal protein L23a [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 146/194 (75.26%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MAPKADSSKKADPKAQALKAAKAVKSGPTF-KKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           MAPKADSSKKADPKAQALK AKAVKSGPTF KKAKKIRTSVTFHRPKTLKKDRNPKYPRI
Sbjct: 1   MAPKADSSKKADPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 AVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTP 180
             +                                           RPDGTKKAYVRLTP
Sbjct: 121 VNTL-----------------------------------------IRPDGTKKAYVRLTP 153

Query: 181 DYDALDVANKIGII 194
           DYDALDVANKIGII
Sbjct: 181 DYDALDVANKIGII 153

[Close]

BLAST of CmoCh04G027330 vs. TAIR 10
Match: AT2G39460.1 (ribosomal protein L23AA )

HSP 1 Score: 221.1 bits (562), Expect = 7.8e-58
Identity = 132/195 (67.69%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. TAIR 10
Match: AT2G39460.2 (ribosomal protein L23AA )

HSP 1 Score: 221.1 bits (562), Expect = 7.8e-58
Identity = 132/195 (67.69%), Postives = 138/195 (70.77%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKKA-KKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D++KKADPKA+ALKAAKAVKSG  FKK  KKIRT VTFHRPKTL K R  KYP+
Sbjct: 1   MSPAKVDTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. TAIR 10
Match: AT3G55280.1 (ribosomal protein L23AB )

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-57
Identity = 132/195 (67.69%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. TAIR 10
Match: AT3G55280.2 (ribosomal protein L23AB )

HSP 1 Score: 219.5 bits (558), Expect = 2.3e-57
Identity = 132/195 (67.69%), Postives = 137/195 (70.26%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKK-AKKIRTSVTFHRPKTLKKDRNPKYPR 60
           M+P K D +KKADPKA+ALKAAKAVKSG   KK AKKIRT VTFHRPKTL   R PKYP+
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPK 60

Query: 61  ISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120
           ISATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK
Sbjct: 61  ISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTK 120

Query: 121 KAVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLT 180
           K  +                                           RPDGTKKAYVRLT
Sbjct: 121 KVNTL-----------------------------------------IRPDGTKKAYVRLT 154

Query: 181 PDYDALDVANKIGII 194
           PDYDALDVANKIGII
Sbjct: 181 PDYDALDVANKIGII 154

[Close]

BLAST of CmoCh04G027330 vs. TAIR 10
Match: AT3G55280.3 (ribosomal protein L23AB )

HSP 1 Score: 212.2 bits (539), Expect = 3.6e-55
Identity = 128/194 (65.98%), Postives = 133/194 (68.56%), Query Frame = 0


Query: 1   MAP-KADSSKKADPKAQALKAAKAVKSGPTFKKAKKIRTSVTFHRPKTLKKDRNPKYPRI 60
           M+P K D +KKADPKA+ALKAAKAVKSG       KIRT VTFHRPKTL   R PKYP+I
Sbjct: 1   MSPAKVDVTKKADPKAKALKAAKAVKSGQI-----KIRTKVTFHRPKTLTVPRKPKYPKI 60

Query: 61  SATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120
           SATPRNKLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK
Sbjct: 61  SATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKK 120

Query: 121 AVSFYHHMFASHLMNKIKHFDDDDRITVIYIEVVLHLDDCVLYNNCRPDGTKKAYVRLTP 180
             +                                           RPDGTKKAYVRLTP
Sbjct: 121 VNTL-----------------------------------------IRPDGTKKAYVRLTP 148

Query: 181 DYDALDVANKIGII 194
           DYDALDVANKIGII
Sbjct: 181 DYDALDVANKIGII 148

The following BLAST results are available for this feature:

BLAST of CmoCh04G027330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AT35	9.0e-59	69.23	60S ribosomal protein L23a OS=Daucus carota OX=4039 GN=RPL23A PE=2 SV=1	[more]
Q07761	1.3e-57	68.72	60S ribosomal protein L23a OS=Nicotiana tabacum OX=4097 GN=RPL23A PE=2 SV=1	[more]
O22644	2.9e-57	68.21	60S ribosomal protein L23A OS=Fritillaria agrestis OX=64177 GN=RPL23A PE=2 SV=1	[more]
Q8LD46	1.1e-56	67.69	60S ribosomal protein L23a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL23AA PE=2 SV=...	[more]
Q9M3C3	3.2e-56	67.69	60S ribosomal protein L23a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL23AB PE=2 SV=...	[more]

BLAST of CmoCh04G027330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JN21	1.3e-65	76.17	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1E3W3	1.3e-65	76.17	50S ribosomal protein L23, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JKM4	5.6e-64	73.58	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1K8U2	9.6e-64	75.26	50S ribosomal protein L23, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A0A0KQU4	9.6e-64	74.09	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_5G264...	[more]

BLAST of CmoCh04G027330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922609.1	2.8e-65	76.17	60S ribosomal protein L23a-like [Cucurbita moschata] >XP_022990476.1 60S ribosom...	[more]
KAG6602342.1	8.1e-65	75.65	60S ribosomal protein L23a, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022991052.1	1.2e-63	73.58	60S ribosomal protein L23a [Cucurbita maxima]	[more]
XP_004140408.1	2.0e-63	74.09	60S ribosomal protein L23a isoform X1 [Cucumis sativus]	[more]
XP_022995723.1	2.0e-63	75.26	60S ribosomal protein L23a [Cucurbita maxima]	[more]

BLAST of CmoCh04G027330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39460.1	7.8e-58	67.69	ribosomal protein L23AA	[more]
AT2G39460.2	7.8e-58	67.69	ribosomal protein L23AA	[more]
AT3G55280.1	2.3e-57	67.69	ribosomal protein L23AB	[more]
AT3G55280.2	2.3e-57	67.69	ribosomal protein L23AB	[more]
AT3G55280.3	3.6e-55	65.98	ribosomal protein L23AB	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..193 e-value: 2.4E-44 score: 152.3
IPR005633	Ribosomal protein L23/L25, N-terminal	PFAM	PF03939	Ribosomal_L23eN	coord: 14..61 e-value: 4.1E-19 score: 68.5
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 72..181 e-value: 2.7E-11 score: 43.6
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 1..121
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 165..193
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 165..193
None	No IPR available	PANTHER	PTHR11620:SF78	60S RIBOSOMAL PROTEIN L23A-2	coord: 1..121
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 171..186
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 70..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G027330.1	CmoCh04G027330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome