CmoCh04G027240 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G027240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 19743401 .. 19748716 (-)
RNA-Seq ExpressionCmoCh04G027240
SyntenyCmoCh04G027240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCTGAGCACAGATTTCAAGAATCTCAACTCTCTGGTACTTTCGTTTTCGGTTCTGTTTATAACTTTCTACTTCGATTCGTTTCTTTTCTCCCGTTTTCGCATTTGTTAATCTTAATTGCTGTGTTCTAAGTGAGTCGTGCGAGTATTAGAGCATCGAGAAAGCATGATTGTGAAACGTTATTTCTTGTTCTTCATCCGGAATGGAGTCGCACTGTAATTTCTTTACTATGATATGCGATTTTGATGAATAGTGGATTCGTTGACTCTGCAATTTTTTGTTTATGGCTTTTCTTCTGTTATATTTTCTCTTAGAAGTAACGATGATTACATGATTATATTTTCTTTAGAAGTAACGATGATTACATGATTATATTTTCTCTTGCTGTGTTCTGTACGCATCTTCTGAAATTTCATCTTCTCTTAGTTCTTGTGTAATAATTGTAATTGAATTTTGATTACCGTACGTTATACTTGGATAACAGAGATACTTGAATCTTGAATTGATTCTTTTATTGAATGATGATGTTGCTTACAAGCTTCTCAATCATGCAACTGTGAACGTTTCTTCTGTGCGCGATCGTTTGATGTTGAGCTTCGTTATGTCCAGGGGATGGTGATTTGGAATCTCCATTGTATTTACTCTTTATTAAAATTACAACGAATGGATGAAAACTGGAATTCTGCATATATTGTCTGGAATTACATCTTCTTTTCTTTCTTAATTATTATAGGATTTTGATTTTTATGTATCGTAATTGGATGAGACGGATGCTTGAACCTCGAATTGCTTTTCTTGTTGATTATGATTTGCGAAGAGATAATTCATGAAGAATGAAAAGCTCGAATCCGTTGTTATGTCCTCTGAGCACAGATTTCAAGAATCTCAACTCTCAGGTACTTTCGTTTTCGATTCTGTTTATAACTTTCTACTTCGATTCGTTTCTTTTCTCCCATTTTCGATTGGTAATCTTAATTGCTGTGTTCTAAGCGAGTCGTGCGACTATCAGAGCATCGAGAAAGCATAATTATGAAACTTAATTTCATGTTCTTCATCCGGAATGGAGTCGCACTGTTATTTCTTTGCTATGATAAGCCACTTTGATGAATAGTGGATTCGTTGACTCTGGAACTTTTTGTTTGTCGCTTTTCTCTGTTATATTTTCTCTTTGAAGTAACGATGAATGCATGTGGATACTCTTATTCTGTACGCATCTTCTGAAATTTCACCTTCTCTTAGTTCTTGTGTACTAATTGTAATTGAGTTTTGATTACCATACTTGTACTTGGATAATAGAGATACTTGAATCTTGAATTGATTCTTTTATTGAATGATGATGTTGCTTACAAGCTTCTCAATCTTGCAACTGTGAACGTTCTTCTGTGCGCGATCGTTTCCGTGTTGAGCTTCGTTATGTCTAGGGGTTGGTGGTTTGGAATCTCTATTGTATTTACTCTCTATTAAAATTACAAGGAATGGATTGTTGAAATATCATCACTAGCTCAATAGAGTCAAGCCCAATAATTGTACTAGCCCAATAGAGTCAAGCCCAATAATTGTACGAGCCCAGTATATTTATTTTAGTAGAGATTTTAGGAGAAAGAGATCTAAATATTTTAGGAGAAAGATTTAGATTTGTTAGGTCTAGATTTAGATTGGTTAAATATAGATGGTTTAGGCTCAGTATAAATACCCCACCCTACCTAGGTTATTCATCCAAGAAATCTAAAAACAATAAAAAAGCAGAAGTATTCTACAGAGTGTCTTGTATTCTCTTCTCGATTGGTCTTAATAAAGAGAGCGAGTGTTTCCCACAGTGAGTTGTGTTCAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCCACAAAAGACGGTGGAGCAAATTGTACACATTTGCTTAAGTGCTGATATGCCTGAAGATTCAAGTGACACTAGTGTTGGTGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAAAAATAATCCTAAAGGCAAATCCAGAGTGTGCCAACGCAGTAGAAGACGAAGTTAATGAGCCGGAGACATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCGATGGAGGAAGAAACTATAGCCCTGGAACAAAATCAGACTTGGGAATTAGTGCCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTTAGGGTTCTCTAAAGAATATGGACTAGACTATGATGAAACGTTTAGTCCAATGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCATGGAGAGTTAAACAGAGAGTTCTACATGAACCAATCGAAGAAATTCGAAAATAAAGTTGGTGTCATTGATCAATATATGCAAAATCCGAAGAAGGCTCATTTGGATGCGTCTCGACGAACCTTGAGATATGTCAAAGGTACAATCAATTACGATCGTTTATACAAAAGAAGCAAAGACTGGAAGCTAGCTGGATATAGTGATGCTGACTATGCAGGAGACCATGATACTTGGAGGCCAACCACTGGGTATGTGTTCAAGTTTGGTTCGGGAACAATTTCTTGGTGTAGCAAGAGACAACCAACAGTATCATTATCAACTACAGAAGCAGAGTATAGAGCAGCTCAGGAAAATACATGGTTAAAACTTTTGATGGAAGATTGGCACCAGAAAATTGAGTATCCAATACCACTTCATTGCGACAACCAATCTGCGATTCGCCTAGCAGAAAATCCGGTGTTTCGTGCTAGAACAAAGCTTGTGGAGGTGCACTACCATTTCATTAGAGAGAAGGTCCTAAAGGAAGAAATCGAGATGCAGCAGATCAAGACAGATGACCAAGTAGCAGACTTGTTTACAAAAGGGCTGAATATTGGCAAACGTGAGAGCTTTCACTGTCAGCTCAACATGATGCAGCGAATGAGGACTAGTGCTGAGGGGGAGTGTTGAAATATCATCACTAGCTCAATAGAGTCAAGCCCAATAATTGTACTAGCCCAATAGAGTCAAGCCCAATAATTGTACGAGCCCAGTATATTTATTTTAGTAGAGATTTTAGGAGAAAGAGATCTAAATATTTTAGGAGAAAGATTTAGATTTGTTAGGTCTAGATTTAGATTGGTTAAATATAGATGGTTTAGGCTCAGTATAAATACCCCACCCTACCTAGGTTATTCATCCAAGAAATCTAAAAACAATAAAAAAGCATAAGCATAAGAGTGTCTTGTATTCTCTTCTCGATTGGTCTTAATAAAGAGAGCGAGTGTTTCCCACAGTGAGTTGTGTTCAACATTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGCCTCATACCAATGAAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACATGGATGAGACGGATGCTTGAATTTGATGTACCGTAATTGGATGAGACGGATGCTTGAACCTCGAATTGCTTTTCTTGTTGATTATGATGTAGACTACGAGCTTCTCATTTCGCCTCTGATTGCTGTTTGGAATTTATACTTAGAAACTCGGATTCTGAACATATCGAGTGGTGTTTCATAATCTCTTGCGTCCTAATGGCTATAGAACCTTTATTTTTATACATCGTACTTGGATCACATAGATGCTTGAATCTTGAACTGATCTTTTATTGATTAGATGCGGCTTCCAAGCTTTCTAGTCTTGCTTCCGTGCACGTTTCTTTTGTGCGCGATCGCTGCAGCGCTGAGCTTCCTTATGTCAGGGTAGGATCGCCAGTAGTTTGCTATGTTCGCACTAAATGAAAATTCCAAGGAACAGGTGTTACCGGATTCCAAGTGTAATCGGCGCATGATTCCAGGTATGGCCTATTGGCTCATAGTCTACATTCTCTGTGCAAACCTATATATAGTTCATTTGATTTCATTTATTGAAACTCGATGAATTCAAGGAATTATGATAATGTGGTTAACATGCTGAGGAAATAGGAACGTCTCTTAAGTATCTTCTCAATCGCTAGAACCAAACACTAACAGCAAAGCTGAAAATCACAACTTCATTAAGAGCTTAGCTACAGACTTTTCACCGGCGAAGGTATGCTGCAACCTTGATGATTATTGCACCGGCTAATAGTATGCCGTTTGTTTCTTTGAAAAAATGGATGGCTTAATCTGTTCGATTAAATGTTCTTTCCTGTATTTCAGGAGAGTTTTGAACCCTTTTGAATTGGCCGTTGATGATGAAGTTTGGTCTATGGAAGTCCAATAGTCTCTTATAGAGCGAAGATTCCTCATTAACCAAATTTCTTCTAGTGGTGAAGTAGGAAGACCAGG

mRNA sequence

ATGTCCTCTGAGCACAGATTTCAAGAATCTCAACTCTCTGACTACGAGCTTCTCATTTCGCCTCTGATTGCTGTTTGGAATTTATACTTAGAAACTCGGATTCTGAACATATCGAGTGATGCGGCTTCCAAGCTTTCTAGTCTTGCTTCCGTGCACGTTTCTTTTGTGCGCGATCGCTGCAGCGCTGAGCTTCCTTATGTCAGGACTTTTCACCGGCGAAGGAGAGTTTTGAACCCTTTTGAATTGGCCGTTGATGATGAAGTTTGGTCTATGGAAGTCCAATAGTCTCTTATAGAGCGAAGATTCCTCATTAACCAAATTTCTTCTAGTGGTGAAGTAGGAAGACCAGG

Coding sequence (CDS)

ATGTCCTCTGAGCACAGATTTCAAGAATCTCAACTCTCTGACTACGAGCTTCTCATTTCGCCTCTGATTGCTGTTTGGAATTTATACTTAGAAACTCGGATTCTGAACATATCGAGTGATGCGGCTTCCAAGCTTTCTAGTCTTGCTTCCGTGCACGTTTCTTTTGTGCGCGATCGCTGCAGCGCTGAGCTTCCTTATGTCAGGACTTTTCACCGGCGAAGGAGAGTTTTGAACCCTTTTGAATTGGCCGTTGATGATGAAGTTTGGTCTATGGAAGTCCAATAG

Protein sequence

MSSEHRFQESQLSDYELLISPLIAVWNLYLETRILNISSDAASKLSSLASVHVSFVRDRCSAELPYVRTFHRRRRVLNPFELAVDDEVWSMEVQ
Homology
[Close]
BLAST of CmoCh04G027240 vs. NCBI nr
Match: KAG6602335.1 (hypothetical protein SDJN03_07568, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 42/94 (44.68%), Postives = 49/94 (52.13%), Query Frame = 0 

Query: 1  MSSEHRFQESQLSDYELLISPLIAVWNLYLETRILNISSDAASKLSSLASVHVSFVRDRC 60
          MSSEHRFQESQL                          SDAASK   L  +  +F+    
Sbjct: 11 MSSEHRFQESQL--------------------------SDAASK--HLVLLPCTFLLCAI 70

Query: 61 SAELPYVRTFHRRRRVLNPFELAVDDEVWSMEVQ 95
          +A L ++ +     RVLNPFELAVDDEVWSMEVQ
Sbjct: 71 AAALSFLMS----GRVLNPFELAVDDEVWSMEVQ 72

The following BLAST results are available for this feature:
BLAST of CmoCh04G027240 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027240 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G027240 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602335.11.3e-0444.68hypothetical protein SDJN03_07568, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G027240 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G027240.1CmoCh04G027240.1mRNA