CmoCh04G026510 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G026510
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RRM domain-containing protein
Location	Cmo_Chr04: 19272894 .. 19275853 (-)
RNA-Seq Expression	CmoCh04G026510
Synteny	CmoCh04G026510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGTTCACTTTCCGCTTACAATTTGCTGTGTCTGCACCGAGAAGTTTGTGGCAGTTTAGGGAATTCTAGGGGTTGATTCCCTTTTGCTTGAATTCAATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGGTATGTATGTTCGTCGTACTGTTCATCAACCCCTTCGATTCGGATTTGGTTATTACATCTCTTAATCTCTCTAGGGTTTCATGCACTTATTCCTCTCTCTTGTCTCTGATTTTCTTATGCTCTCTGTTTTTAAGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCACATGGTTTCTTTGAGAAGGAGATGGAAGGTTTGGCAGCTCACATTTTACATTCAATGAATGAAGTATGAGTCTATTGTTATCTTGTCTGCTACGTACGTCTTAACCCCTACAGTTTTTTGCAGGGTTTTTCGGACAGTTTGGGAAAGTCAAACGATTAAGAATTGCACGGAATAAAAAAGTAAGTCTCTTATCTGCAAAGGGTTTTTCCATAAAGAAAATATGTTCATGGGAGAGTATTGCGTTACAATAATCGCTAGATTCTGTGCTTTGTGGCGGTTTGGATTGAGTTCAACAATATGATTTTTAGAGATGTGGAGTAGTCTTGATTGAGTTTGAGAGGTAGTTAGGTTTAATGCCTCTTTGTAGACATTGATCACTAGGCCTTATTGTAATTGTAGTCTTGGTTGATTTTGTTTGATTGGAATCCCTTTTTGTAGCTGTTTTGGGACGTTTGTTGGGCTTAGTTTTTTGTTTGCCCTTATACATTCTTTTATCTTTCTCAATGAAAGTTCGACTTCTTTGAAGAAAAAAAACACCAGATTTTACTGATAATCATAACTTCTTGACTTAATTTAACGTTCTTTTAAAGTATCTTCATCTTTGTTTTAATCTATTATGATATATACTTTTTCTGTATGCAGACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTGCTATTATCTATTTTGGGACGTTTGTGCAGATTGTTTTCTTAGTTTTAGTTTTTCATATTATCCAAAATTTGGATTTTGTGAGCACAGGTAGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTGTAAGTAATCGATTGCATTTCTGCTGCTAGAATTTTCTTCCACCATGTGTTGACAGACATGGTTGTTGAATATGTCAACCGACATTGTTTATTTTTCGCTCAATTGTTATCATGACATATTTACAGATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCATAACAAGGTATCAACTATCAAGTTTGGAGAATTATCTTGTAATAAACAAACATATTTTTTTTACATATTTTTGGATAATTTTCAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTAAGCATTTTCTTTTTCCTGAAATTATTAATATTGGTATCGATATTTAGCCCATTCCTCAGTTTTATTGGCTGATTTCTGCTTTGTGATTGAACAATTCCCATGCCATAAGAAACTTGGGGGCTTTTGCTGTGTTTTTCTTTTAAAAAAAACTAGAACTTCCGTTGAGATAAATTAACGAAAAAAATGGGTTTTAGAAAGGGGCAGTCCAAAAAGGAGCTAAACAAAACTAAACCTGAAAAAGAAAAGATGGCTCCAATCCTAAAGAATATGGCTAAGAGGATGATTCTCACGAACTCAGGAGCTCACATTGGTATTGTATTGTACAGCCTGTGTGAGCCACTTCACTTGTATTGCACCTCACTTTTCATGATTCCCATGTGAAAATGGTCTTATATAGACAATTTAAGGATATGATATTTAGGTAATCCTCTTCATCAATTCGTATATTTTCTATAGTTGAAGTGATGTTTAGTTTTATCAGAGTGCACTGCTAAACCTGTTTAGCTTCATGTGCTTGTGCATGCCTTGTTAGAACTTAGCAACATACGATGCCCCGTCCCCCTTCTCATGGAATCCGGTTGGTCACACCAAAATGTTTCTTGATTTGAGATTCAATGTCGGTATTTTAACGCCGAAATAGTGCAGGAAGGGGCTTCTTCCCTCCACCTCCATTTGTTTTTCTGCTGAATTTGGAAAATTTGCAGGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTTGACGAAGATTAGAAGGAGCATCGAGTTCATTAAAGCTATAATATTGTCACAATAGAGAGGAAGGATGGAAGAATGACGAGCCAGCCATTGCATCTTTCCAGTTTCTTATATGCTCTGGGAGGTAACCTTCTTGAATCTCCAAATTTTGATCTTTGAAATTTTGTGTTGAACCCTTTTGTTTCTAAGAAACAGGAACTGAAATAGTATATTGTAGTTAGTTATTAATCTCCATTAGTAATAAATGTATGCCTATAAATGATAATCTTTAAAGTAGTTTAGCCATTAAGACTTGACTCATTCAAAGTGCTTGCCATGCCATTATGAACCCAACGGTTTGATGTGATATAACCTTTTAGTTTTTGAAAATTCTGTTTATATATAAATTGAAATAGAAATTTAAGAAAAATAAGTGGGCCATGATTTAGTTAAATGCAAAGTGGGTTCATAAAATTAGTCACGGTGTTTGAAGCAATAAAGTAAGTGGTGGTTTTCTTTCATTTTCTTCTTAATTCAACGGCAACCCTCTTCTTATAATTGGTGAC

mRNA sequence

CATTGTTCACTTTCCGCTTACAATTTGCTGTGTCTGCACCGAGAAGTTTGTGGCAGTTTAGGGAATTCTAGGGGTTGATTCCCTTTTGCTTGAATTCAATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCACATGGTTTCTTTGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTCAAACGATTAAGAATTGCACGGAATAAAAAAACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTAGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCATAACAAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTTGACGAAGATTAGAAGGAGCATCGAGTTCATTAAAGCTATAATATTGTCACAATAGAGAGGAAGGATGGAAGAATGACGAGCCAGCCATTGCATCTTTCCAGTTTCTTATATGCTCTGGGAGGTAACCTTCTTGAATCTCCAAATTTTGATCTTTGAAATTTTGTGTTGAACCCTTTTGTTTCTAAGAAACAGGAACTGAAATAGTATATTGTAGTTAGTTATTAATCTCCATTAGTAATAAATGTATGCCTATAAATGATAATCTTTAAAGTAGTTTAGCCATTAAGACTTGACTCATTCAAAGTGCTTGCCATGCCATTATGAACCCAACGGTTTGATGTGATATAACCTTTTAGTTTTTGAAAATTCTGTTTATATATAAATTGAAATAGAAATTTAAGAAAAATAAGTGGGCCATGATTTAGTTAAATGCAAAGTGGGTTCATAAAATTAGTCACGGTGTTTGAAGCAATAAAGTAAGTGGTGGTTTTCTTTCATTTTCTTCTTAATTCAACGGCAACCCTCTTCTTATAATTGGTGAC

Coding sequence (CDS)

ATGGGGGCTAAGGCGAAGAAAGCTATGAAGAAGAAACTCAATAAGGCTACTTCTCTGTTATCCAACAAGAAGGAATCTGCCGATTTCTTGCCATTGGAGGGTGGTCCTGGGCGTAAGTTACCGGCACAAAAGCCATTGGAAAGTACTGCTACTGTTCTTTACATTGCTCGCATACCACATGGTTTCTTTGAGAAGGAGATGGAAGGGTTTTTCGGACAGTTTGGGAAAGTCAAACGATTAAGAATTGCACGGAATAAAAAAACTGGGAAGTCGAGGCATTTTGGCTACATTGAGTTCGATTCTCCAGAGGTAGCAAAAATTGTAGCTGATTCTATGCATAACTATTTGTTGTACGAACACATTCTGAAAGTTCATCTAATTGCTCCCGAACATGTTCATCCCAAACTATGGAAAGGTTTTAACTATCGCCACATTCCCTTAAACTGGTCTGAACTTGAACGTAAAAAGCATAACAAGGAAAGGACATTGGGTGAGCACAGGAAGTTGGTGGAGAGGATCTTGAAGCGGAATCAGGCTAGACAGAAGAGGATAAGAGCTGCTGGGATTGATTACGAGTGCCCAGAAATTGTGGGTAGTGTCCAACCAACTCCCAAGAAGATCAAGTTTGACGAAGATTAG

Protein sequence

MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED

Homology

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BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot
Match: Q8JIY8 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=nifk PE=2 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 0


Query: 19  LLSNKKESADFLPLEGGPGRKLPAQKPLESTAT-----VLYIARIPHGFFEKEMEGFFGQ 78
           L  N KE A+F        +K+   K    T       VLY+  +P G FE +++ +F Q
Sbjct: 15  LALNPKEDAEF-------QKKVQQVKKRPQTGQTLSPGVLYVGHLPRGLFEPQLKSYFEQ 74

Query: 79  FGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVH 138
           FGKV RLR++R+KKTG S+ +G++EF+  EVAKIVA++M+NYL+ E I+K H+I PE VH
Sbjct: 75  FGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCHVIPPEKVH 134

Query: 139 PKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYEC 198
            KL+ G         +  + R  +NK  T  + +K+  ++L +    +KR+ A GIDY+ 
Sbjct: 135 EKLFVGSIAGFKKPKYPAVTR--YNKTHTEDDVKKVGTKLLSKESKLRKRLAAKGIDYDF 192

Query: 199 PEIVGSV 201
           P     +
Sbjct: 195 PGFAAQI 192

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BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot
Match: O74978 (Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC1827.05c PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.5e-27
Identity = 59/155 (38.06%), Postives = 101/155 (65.16%), Query Frame = 0


Query: 38  RKLPAQKPLESTATVLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYI 97
           +K+   K L+    VLY+ R+PHGF+EK+M  +F QFG V RLR++RN+KTG S+H+ +I
Sbjct: 92  KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151

Query: 98  EFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKH 157
           EF+S +VA +VA++MHNYLLY  +L+  +I  + VH  ++KG +     +  + + R +H
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQH 211

Query: 158 NKERTLGEHRKLVERILKRNQARQKRIRAAGIDYE 193
            K  +  +  KL+ R  ++ + ++++++  GI  E
Sbjct: 212 EKPLSKEKADKLITRHNRKLKLKKRKLKELGITLE 246

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BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot
Match: Q6GL69 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis OX=8364 GN=nifk PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-26
Identity = 60/143 (41.96%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 52  VLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADS 111
           V+YI  IP   +E ++  +F QFG V RLR++R+KKTG S+ + Y+EF+  EVAKIVAD+
Sbjct: 42  VIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEFECDEVAKIVADT 101

Query: 112 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVE 171
           M+NYL  E +LK   + PE VHP+L+ G   +        + R  +NK R+  E +K+ +
Sbjct: 102 MNNYLFCERLLKCEFVPPEKVHPRLFIGCTAKFRKPTKPAVSR--YNKRRSEAEQKKMTQ 161

Query: 172 RILKRNQARQKRIRAAGIDYECP 195
           R+L +    +KR+   GIDY+ P
Sbjct: 162 RMLSKENKVRKRLAEKGIDYDFP 182

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BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot
Match: Q3SZM1 (MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=NIFK PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.4e-26
Identity = 68/185 (36.76%), Postives = 109/185 (58.92%), Query Frame = 0


Query: 16  ATSLLS-NKKESADFLPLEGGPGRKLPAQKPLES-TATVLYIARIPHGFFEKEMEGFFGQ 75
           A  LLS N +E A F        R+   Q+  +  T  V+Y+  +P   +E ++  +F Q
Sbjct: 8   AKPLLSLNPQEDAKFKKEVAQVRRRATKQQEKQKPTPGVIYVGHLPPTLYETQIRAYFSQ 67

Query: 76  FGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLIAPEHVH 135
           FG V R R++R+KKTG S+ +G++EF+S +VAKI A++M+NYL  E +LK H I PE VH
Sbjct: 68  FGTVTRFRLSRSKKTGNSKGYGFVEFESEDVAKIAAETMNNYLFGERLLKCHFIPPEKVH 127

Query: 136 PKLWKGFNYRHIPLNWSELER-KKHNKERTLGEHRKLVERILKRNQARQKRIRAAGIDYE 195
            +L++ +   H+P         K++N+ R+L +  ++ ER  K+ +  +KR+   GIDY 
Sbjct: 128 EELFREW---HMPFKRPSYPAVKRYNQNRSLVQKLRMEERFKKKEKLLRKRLAKKGIDYN 187

Query: 196 CPEIV 198
            P +V
Sbjct: 188 FPSLV 189

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BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot
Match: Q7SYS2 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=8355 GN=nifk PE=2 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 2.4e-25
Identity = 71/187 (37.97%), Postives = 108/187 (57.75%), Query Frame = 0


Query: 9   MKKKLNKATSLLS-NKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPHGFFEKEM 68
           M ++L ++  LLS + K   DF        RK   +K    T  V+YI  IP    E ++
Sbjct: 1   MAEELVQSEKLLSLDPKLQEDFQQKVHDIRRK---RKANALTPGVIYIGHIPKSLIEPQL 60

Query: 69  EGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEHILKVHLI 128
           + +F QFG V RLR++R+KKTG S+ + Y+E++  EVAKIVAD+M+NYL  E +LK   +
Sbjct: 61  QEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFV 120

Query: 129 APEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQARQKRIRAA 188
            PE VHP+L+ G N R        + R  +N +R   E +K+ +R++ +    +KR+   
Sbjct: 121 TPEKVHPRLFIGCNTRFRKPTKPAVTR--YNSKRNKEEVKKMTQRMISKEYKLRKRLAEK 180

Query: 189 GIDYECP 195
           GIDY+ P
Sbjct: 181 GIDYDFP 182

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BLAST of CmoCh04G026510 vs. ExPASy TrEMBL
Match: A0A6J1E350 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662 GN=LOC111430401 PE=4 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 9.1e-116
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. ExPASy TrEMBL
Match: A0A6J1JIS9 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111487311 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.6e-112
Identity = 205/212 (96.70%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL+KATSL+SN+ ESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLISNQTESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERK+HNKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKRHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAA IDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAARIDYECPEIVGSVQPTPKKIKFDED 212

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BLAST of CmoCh04G026510 vs. ExPASy TrEMBL
Match: A0A1S3C4U7 (uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC103496493 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.4e-108
Identity = 198/212 (93.40%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRH PLNWSELERK+HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. ExPASy TrEMBL
Match: A0A6J1JZE0 (uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 GN=LOC111489660 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.7e-107
Identity = 194/212 (91.51%), Postives = 207/212 (97.64%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL+KATS LS+KKESADFLPLEGGPGRKLPAQKPLE+TATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSSLSDKKESADFLPLEGGPGRKLPAQKPLENTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKR+RIARN+KTGKSRHFGYIEF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRIRIARNRKTGKSRHFGYIEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           +LKVHLI+PEHVHPKLWKGFNYRH PL+WSELERK+HNKERTL EH+KLVERILKR+QAR
Sbjct: 121 LLKVHLISPEHVHPKLWKGFNYRHKPLDWSELERKQHNKERTLDEHKKLVERILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +KRIRAAGIDYECPEIVGSVQP PKKIKFDED
Sbjct: 181 KKRIRAAGIDYECPEIVGSVQPAPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. ExPASy TrEMBL
Match: A0A0A0KCE3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.5e-106
Identity = 194/212 (91.51%), Postives = 202/212 (95.28%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKA+KAMKKKLNKAT L S+KKESADFLPLEGGPGRKL  QKPLESTATVLYI RIPH
Sbjct: 74  MGAKARKAMKKKLNKATPLSSDKKESADFLPLEGGPGRKLSVQKPLESTATVLYIGRIPH 133

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 134 GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYVEFESPEVAKIVADSMHNYLLYEH 193

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLI PEHVHPKLWKGFNYRH PLNWSELERK HNKERTL EH+KLV+RILKR+QAR
Sbjct: 194 ILKVHLIDPEHVHPKLWKGFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQAR 253

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVG VQPTPKKIKFDED
Sbjct: 254 QKRIRAAGIDYECPEIVGGVQPTPKKIKFDED 285

[Close]

BLAST of CmoCh04G026510 vs. NCBI nr
Match: XP_022922397.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata])

HSP 1 Score: 426.0 bits (1094), Expect = 1.9e-115
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. NCBI nr
Match: XP_023525015.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 422.9 bits (1086), Expect = 1.6e-114
Identity = 211/212 (99.53%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKK NKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKQNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. NCBI nr
Match: KAG6602267.1 (MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 419.9 bits (1078), Expect = 1.3e-113
Identity = 209/212 (98.58%), Postives = 211/212 (99.53%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL+KATSL+SNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLISNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKF ED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFVED 212

[Close]

BLAST of CmoCh04G026510 vs. NCBI nr
Match: XP_022990457.1 (uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima])

HSP 1 Score: 414.1 bits (1063), Expect = 7.4e-112
Identity = 205/212 (96.70%), Postives = 210/212 (99.06%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL+KATSL+SN+ ESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH
Sbjct: 1   MGAKAKKAMKKKLSKATSLISNQTESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKS+HFGYIEFDSPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSKHFGYIEFDSPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERK+HNKERTLGEHRKLVERILKRNQAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKRHNKERTLGEHRKLVERILKRNQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAA IDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAARIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. NCBI nr
Match: XP_008456579.1 (PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo])

HSP 1 Score: 401.4 bits (1030), Expect = 5.0e-108
Identity = 198/212 (93.40%), Postives = 205/212 (96.70%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATSLLSNKKESADFLPLEGGPGRKLPAQKPLESTATVLYIARIPH 60
           MGAKAKKAMKKKL KAT L S+KKESADFLPLEGGPGRKLP QKPLESTATVLYI RIPH
Sbjct: 1   MGAKAKKAMKKKLKKATPLSSDKKESADFLPLEGGPGRKLPVQKPLESTATVLYIGRIPH 60

Query: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSMHNYLLYEH 120
           GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGY+EF+SPEVAKIVADSMHNYLLYEH
Sbjct: 61  GFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYVEFESPEVAKIVADSMHNYLLYEH 120

Query: 121 ILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVERILKRNQAR 180
           ILKVHLIAPEHVHPKLWKGFNYRH PLNWSELERK+HNKERTL EH+KLV+RILKR+QAR
Sbjct: 121 ILKVHLIAPEHVHPKLWKGFNYRHTPLNWSELERKQHNKERTLVEHKKLVDRILKRDQAR 180

Query: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED
Sbjct: 181 QKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 212

[Close]

BLAST of CmoCh04G026510 vs. TAIR 10
Match: AT5G04600.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.4e-71
Identity = 132/221 (59.73%), Postives = 172/221 (77.83%), Query Frame = 0


Query: 1   MGAKAKKAMKKKLNKATS--------LLSNKKESADFLPLEGGPGRKLP-AQKPLESTAT 60
           MGAKAKKA+KK + K  +        L  N K SADFLPLEGGP RK P    PL++ AT
Sbjct: 1   MGAKAKKALKKNMKKVAASASSSQLPLPQNPKPSADFLPLEGGPARKAPVTTPPLQNKAT 60

Query: 61  VLYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADS 120
           VLYI RIPHGF+E E+E FF QFG VKR+R+ARNKKTGKS+HFG+I+F+ PEVA+I A +
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 121 MHNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKKHNKERTLGEHRKLVE 180
           M++YLL EH+LKVH+I PE+V P LW+GF     P++  ++ER++ NKERTL EHRK+++
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 181 RILKRNQARQKRIRAAGIDYECPEIVGSVQPTPKKIKFDED 213
           +I+K++Q R+KRI AAGI+YECPE+VG+ QP PK+IKF E+
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYECPELVGNTQPVPKRIKFSEE 221

[Close]

BLAST of CmoCh04G026510 vs. TAIR 10
Match: AT1G03457.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 37  GRKLPAQKPLESTATV-LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFG 96
           G  +P+    E  A   L+I  IP  F ++E+   F  FGKV   ++  +K TG S+ FG
Sbjct: 315 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 374

Query: 97  YIEFDSPEVAKIVADSMHNYLLYEHILKVHL 127
           +I +DS   A+   ++M+   L    LKV L
Sbjct: 375 FISYDSQAAAQNAINTMNGCQLSGKKLKVQL 405

[Close]

BLAST of CmoCh04G026510 vs. TAIR 10
Match: AT1G03457.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0


Query: 37  GRKLPAQKPLESTATV-LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFG 96
           G  +P+    E  A   L+I  IP  F ++E+   F  FGKV   ++  +K TG S+ FG
Sbjct: 324 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383

Query: 97  YIEFDSPEVAKIVADSMHNYLLYEHILKVHL 127
           +I +DS   A+   ++M+   L    LKV L
Sbjct: 384 FISYDSQAAAQNAINTMNGCQLSGKKLKVQL 414

[Close]

BLAST of CmoCh04G026510 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-06
Identity = 31/110 (28.18%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 41  PAQKPLESTATV--LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIE 100
           P ++ +ES + +  L+I  I     E+ ++ +FG++G +    I R++ TG++R FG+I 
Sbjct: 3   PEEQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIV 62

Query: 101 FDSPEVAKIVADSMH-----------------NYLLYEHILKVHLIAPEH 132
           F  P VA+ V    H                   +L  H   +HLI+P H
Sbjct: 63  FADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112

[Close]

BLAST of CmoCh04G026510 vs. TAIR 10
Match: AT3G52660.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 49.3 bits (116), Expect = 4.5e-06
Identity = 29/104 (27.88%), Postives = 53/104 (50.96%), Query Frame = 0


Query: 53  LYIARIPHGFFEKEMEGFFGQFGKVKRLRIARNKKTGKSRHFGYIEFDSPEVAKIVADSM 112
           +Y+  IP    E +++GF G  G+V  +RI R K +G  + + ++ F S ++A    D++
Sbjct: 94  VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153

Query: 113 HNYLLYEHILKVHLIAPEHVHPKLWKGFNYRHIPLNWSELERKK 157
           +N       +K      +H   +L+ G    ++P NW E + KK
Sbjct: 154 NNTDFRGKRIKCSTTQAKH---RLFLG----NVPRNWMESDIKK 190

The following BLAST results are available for this feature:

BLAST of CmoCh04G026510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8JIY8	4.5e-27	37.97	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Danio rerio OX=7955 GN=...	[more]
O74978	4.5e-27	38.06	Uncharacterized RNA-binding protein C1827.05c OS=Schizosaccharomyces pombe (stra...	[more]
Q6GL69	2.2e-26	41.96	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus tropicalis...	[more]
Q3SZM1	8.4e-26	36.76	MKI67 FHA domain-interacting nucleolar phosphoprotein OS=Bos taurus OX=9913 GN=N...	[more]
Q7SYS2	2.4e-25	37.97	MKI67 FHA domain-interacting nucleolar phosphoprotein-like OS=Xenopus laevis OX=...	[more]

BLAST of CmoCh04G026510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E350	9.1e-116	100.00	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita moschata OX=3662...	[more]
A0A6J1JIS9	3.6e-112	96.70	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A1S3C4U7	2.4e-108	93.40	uncharacterized RNA-binding protein C1827.05c OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1JZE0	7.7e-107	91.51	uncharacterized RNA-binding protein C1827.05c-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A0A0KCE3	6.5e-106	91.51	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G044030 PE=4 SV...	[more]

BLAST of CmoCh04G026510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022922397.1	1.9e-115	100.00	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita moschata]	[more]
XP_023525015.1	1.6e-114	99.53	MKI67 FHA domain-interacting nucleolar phosphoprotein [Cucurbita pepo subsp. pep...	[more]
KAG6602267.1	1.3e-113	98.58	MKI67 FHA domain-interacting nucleolar phosphoprotein-like protein, partial [Cuc...	[more]
XP_022990457.1	7.4e-112	96.70	uncharacterized RNA-binding protein C1827.05c-like [Cucurbita maxima]	[more]
XP_008456579.1	5.0e-108	93.40	PREDICTED: uncharacterized RNA-binding protein C1827.05c [Cucumis melo]	[more]

BLAST of CmoCh04G026510 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04600.1	1.4e-71	59.73	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.1	2.6e-06	34.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G03457.2	2.6e-06	34.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	2.6e-06	28.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52660.1	4.5e-06	27.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 52..125 e-value: 3.3E-18 score: 76.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 53..120 e-value: 3.3E-12 score: 46.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 51..129 score: 14.317041
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 3..126 e-value: 3.0E-20 score: 74.4
None	No IPR available	PANTHER	PTHR46754	MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN	coord: 1..212
None	No IPR available	PANTHER	PTHR46754:SF9	SUBFAMILY NOT NAMED	coord: 1..212
None	No IPR available	CDD	cd12307	RRM_NIFK_like	coord: 52..125 e-value: 8.80932E-42 score: 134.239
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G026510.1	CmoCh04G026510.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding