CmoCh04G026270 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G026270
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description40S ribosomal protein S17
LocationCmo_Chr04: 19135282 .. 19137137 (-)
RNA-Seq ExpressionCmoCh04G026270
SyntenyCmoCh04G026270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTCTCTTATATCTCTCCCTCTCTCGCATTAGGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGGTCTGTTCTTCTAACTGGATTTTCTAATTCTCTTCTTGATGTGCCTTTGTATATAATTGCATGTTCTGTTCGCGTTGAGTTTTTCAGTTATCGAGTTTGTTGGATTCGTTCTTAGTTCTTCTGTTTCTGAAAATTTAATTAACCGTAGATTCATTCTGCTTTTTCCTTTTTTTTTTTTTTAGTTATCAGTAATTTTTTGAGAGGTTTTGTGAATCTGTTCAGTTGTTGATGAGAAAGAGAAGCATTTATCGCCATTGTTATGTTGCGGGCGTTTATTTTACTTTGGTTGCTATTCTGTGAATCATGACCCCTTTTAGATTTGGAGATGTTTGAGGTTATATGTTCTTTGTGATGATCAATGGATTTTAAGAAGCTTGTAGCTACCTGATGTTGGATGTACATTTTTCAAAAAATGTATGTCACAAGATGTTTATGCATTTTCTGTTTTTATTTATCAATGTTGTTCTTAAGTTTTTCTTCCAAGTGCAGAGCAGGGTTGGAAAAATGAAAAGGAAATCAAGGTCCATTTGTAGTTCTTGTGTGTGGAAAAATACCACCTAAATTCAAAGGGTTTTGAACTGAGTGAATTGATTCTTGATCTAGCTTAAGACCATTAGGATGTGTGTTTAGGATTTTGTTGGACACTGTCAGATCTTTTTCTGGTTGAAAAAACTCGTGCAAACTAGGGTAGGCTGCTGATTCTCATTGTTTTTCCCAGGTAAAGTTCGGTAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGGTGGCCCGAGGAGATACTAAGGTAATCAAGGTTACGCCACTGCTTTTGGGAATTAGAAGTTTTTTGTTATTCAATATCTTAAGGCCATGGACATTCTTGTTGCTAGTTCTCTTCAGATTTGTCCTTAAATTTGGTACTTGTCTTTTTAGTTTTGACTTTGAGTGGATGTTCAAATCATTCTGGACATGGATGATGATACTTTTGTTATAAGTATTGAATATTTCTGAAGTTAACATTTTGCTATTAGTCATTCTTCACAGCTGCAATTTCACTCTTATAATTCACTTTTCTAGTTTGTTCTGTTCATCAGGCATTTCGTTCTATTGTTTGTGTGGGATTTGTTTGATAACGATTTTGTTTGGAGTGATTGGTCTTTTAATTCGTATTTAAACTTTCTTAATATATATTTTTTGGTAGGTTTCTACTGGTTTCTTCAAGTATTTAACCACAATTTCTAAACCTTTTACTTCTTTTGATTATTCCTTGTGTTCTTTTTATCTCTACTTTTCAGTGAACAATTTGGTCAATTGGAAGTTATAA

mRNA sequence

ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTATAA

Coding sequence (CDS)

ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTATAA

Protein sequence

MDKIKKNTRNHTPEARNPKGSPFSLKSRRHHNFALSGTLQNPFVLSFQKMGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMAPLQAFGRGAVNNLVNWKL
Homology
[Close]
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 231.9 bits (590), Expect = 6.2e-60
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 229.6 bits (584), Expect = 3.1e-59
Identity = 120/136 (88.24%), Postives = 128/136 (94.12%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVE- 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKETLDML+A GMSD+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 170 -VEPQAMAPLQAFGRG 184
             EPQA+A L ++GRG
Sbjct: 121 AAEPQAVAALPSYGRG 136

[Close]
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 119/135 (88.15%), Postives = 126/135 (93.33%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           +P QAMAP+ AFG G
Sbjct: 121 DPQQAMAPIPAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 170 EP-QAMAPLQAFG 182
           EP QAMAP+ AFG
Sbjct: 121 EPQQAMAPIAAFG 133

[Close]
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID++KVDKETL+MLA+ GMSDI G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 170 E-PQAMAPLQAFGRGA 185
           E  QAMAP   FGR A
Sbjct: 121 ETQQAMAP-AVFGRPA 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1JIV8 (40S ribosomal protein S17-4 OS=Cucurbita maxima OX=3661 GN=LOC111487331 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAMAPLQAFGRGA
Sbjct: 121 EPQAMAPLQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1HBN9 (40S ribosomal protein S17-4 OS=Cucurbita moschata OX=3662 GN=LOC111461982 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAMAPLQAFGRGA
Sbjct: 121 EPQAMAPLQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A5D3CKV8 (40S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001050 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1BXJ2 (40S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGAV 186
           EPQAM P QAFGRGAV
Sbjct: 121 EPQAMIPPQAFGRGAV 136

[Close]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A1S3C4X5 (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. NCBI nr
Match: KAG7032927.1 (40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGAVNNLVNWKL 194
           EPQAMAPLQAFGRGAVNNLVNWKL
Sbjct: 121 EPQAMAPLQAFGRGAVNNLVNWKL 144

[Close]
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAMAPLQAFGRGA
Sbjct: 121 EPQAMAPLQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-64
Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGAV 186
           EPQAM P QAFGRGAV
Sbjct: 121 EPQAMIPPQAFGRGAV 136

[Close]
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal protein S17-3 [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 3.1e-64
Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_004140911.1 (40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_005187 [Cucumis sativus])

HSP 1 Score: 254.6 bits (649), Expect = 6.8e-64
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 170 EPQAMAPLQAFGRGA 185
           EPQAM P QAFGRGA
Sbjct: 121 EPQAMIPPQAFGRGA 135

[Close]
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61
Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 170 EP-QAMAPLQAFGRG 184
           EP QAMAP+ AFG G
Sbjct: 121 EPQQAMAPIAAFGGG 135

[Close]
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT2G05220.1 (Ribosomal S17 family protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0 

Query: 50  MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 109
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 110 IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 169
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETL+MLA+ GMSD  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 170 EP-QAMAPLQAFG 182
           EP QAMAP+ AFG
Sbjct: 121 EPQQAMAPIAAFG 133

The following BLAST results are available for this feature:
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LZ176.2e-6089.6340S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3[more]
P492153.1e-5988.2440S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3[more]
P492052.0e-5888.1540S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3[more]
Q9SJ362.0e-5889.4740S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3[more]
Q9SQZ12.2e-5787.5040S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3[more]
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JIV86.0e-66100.0040S ribosomal protein S17-4 OS=Cucurbita maxima OX=3661 GN=LOC111487331 PE=3 SV=... [more]
A0A6J1HBN96.0e-66100.0040S ribosomal protein S17-4 OS=Cucurbita moschata OX=3662 GN=LOC111461982 PE=3 S... [more]
A0A5D3CKV81.5e-6498.5240S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A6J1BXJ21.5e-6497.7940S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 ... [more]
A0A1S3C4X51.5e-6498.5240S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1[more]
BLAST of CmoCh04G026270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032927.11.5e-71100.0040S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_022961398.11.2e-65100.0040S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal p... [more]
XP_022134321.13.1e-6497.7940S ribosomal protein S17-4 [Momordica charantia][more]
XP_008456611.13.1e-6498.52PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal ... [more]
XP_004140911.16.8e-6497.7840S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein C... [more]
BLAST of CmoCh04G026270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G04800.14.4e-6189.63Ribosomal S17 family protein [more]
AT5G04800.24.4e-6189.63Ribosomal S17 family protein [more]
AT5G04800.34.4e-6189.63Ribosomal S17 family protein [more]
AT5G04800.44.4e-6189.63Ribosomal S17 family protein [more]
AT2G05220.11.4e-5989.47Ribosomal S17 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001210Ribosomal protein S17ePFAMPF00833Ribosomal_S17ecoord: 50..168
e-value: 1.7E-58
score: 195.8
IPR001210Ribosomal protein S17ePANTHERPTHR1073240S RIBOSOMAL PROTEIN S17coord: 50..185
IPR001210Ribosomal protein S17eHAMAPMF_00511Ribosomal_S17ecoord: 50..112
score: 19.921467
IPR036401Ribosomal protein S17e-like superfamilyGENE3D1.10.60.20coord: 50..111
e-value: 3.2E-32
score: 111.9
IPR036401Ribosomal protein S17e-like superfamilySUPERFAMILY116820Rps17e-likecoord: 50..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR10732:SF1340S RIBOSOMAL PROTEIN S17-4coord: 50..185
IPR018273Ribosomal protein S17e, conserved sitePROSITEPS00712RIBOSOMAL_S17Ecoord: 90..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G026270.1CmoCh04G026270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome