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CmoCh04G026270 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTCTCTTATATCTCTCCCTCTCTCGCATTAGGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGGTCTGTTCTTCTAACTGGATTTTCTAATTCTCTTCTTGATGTGCCTTTGTATATAATTGCATGTTCTGTTCGCGTTGAGTTTTTCAGTTATCGAGTTTGTTGGATTCGTTCTTAGTTCTTCTGTTTCTGAAAATTTAATTAACCGTAGATTCATTCTGCTTTTTCCTTTTTTTTTTTTTTAGTTATCAGTAATTTTTTGAGAGGTTTTGTGAATCTGTTCAGTTGTTGATGAGAAAGAGAAGCATTTATCGCCATTGTTATGTTGCGGGCGTTTATTTTACTTTGGTTGCTATTCTGTGAATCATGACCCCTTTTAGATTTGGAGATGTTTGAGGTTATATGTTCTTTGTGATGATCAATGGATTTTAAGAAGCTTGTAGCTACCTGATGTTGGATGTACATTTTTCAAAAAATGTATGTCACAAGATGTTTATGCATTTTCTGTTTTTATTTATCAATGTTGTTCTTAAGTTTTTCTTCCAAGTGCAGAGCAGGGTTGGAAAAATGAAAAGGAAATCAAGGTCCATTTGTAGTTCTTGTGTGTGGAAAAATACCACCTAAATTCAAAGGGTTTTGAACTGAGTGAATTGATTCTTGATCTAGCTTAAGACCATTAGGATGTGTGTTTAGGATTTTGTTGGACACTGTCAGATCTTTTTCTGGTTGAAAAAACTCGTGCAAACTAGGGTAGGCTGCTGATTCTCATTGTTTTTCCCAGGTAAAGTTCGGTAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGGTGGCCCGAGGAGATACTAAGGTAATCAAGGTTACGCCACTGCTTTTGGGAATTAGAAGTTTTTTGTTATTCAATATCTTAAGGCCATGGACATTCTTGTTGCTAGTTCTCTTCAGATTTGTCCTTAAATTTGGTACTTGTCTTTTTAGTTTTGACTTTGAGTGGATGTTCAAATCATTCTGGACATGGATGATGATACTTTTGTTATAAGTATTGAATATTTCTGAAGTTAACATTTTGCTATTAGTCATTCTTCACAGCTGCAATTTCACTCTTATAATTCACTTTTCTAGTTTGTTCTGTTCATCAGGCATTTCGTTCTATTGTTTGTGTGGGATTTGTTTGATAACGATTTTGTTTGGAGTGATTGGTCTTTTAATTCGTATTTAAACTTTCTTAATATATATTTTTTGGTAGGTTTCTACTGGTTTCTTCAAGTATTTAACCACAATTTCTAAACCTTTTACTTCTTTTGATTATTCCTTGTGTTCTTTTTATCTCTACTTTTCAGTGAACAATTTGGTCAATTGGAAGTTATAA ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTATAA ATGGATAAGATAAAAAAAAATACACGAAATCATACTCCAGAGGCAAGAAACCCTAAAGGTAGCCCGTTTTCTCTCAAGTCGCGGCGGCACCACAACTTCGCTCTCTCTGGTACTCTTCAGAACCCTTTCGTCCTCTCCTTCCAGAAGATGGGTCGTGTTCGTACCAAGACTGTGAAGAAATCTTCACGCCAGGTTATTGAGAGATACTACTCTAAAATGACACTGGATTTCCACACTAACAAGAAGATCTTGGAAGAGGTTGCGATCATCCCATCTAAGAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAACGTCGTATGGATTTCGTTCCAGACGAATCAGCCATTAAGATTGATGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCTTTTGGCATGTCAGACATTCCTGGACTCGTTGAGGTCGAGCCGCAGGCTATGGCTCCACTCCAAGCTTTCGGTAGGGGTGCAGTGAACAATTTGGTCAATTGGAAGTTATAA MDKIKKNTRNHTPEARNPKGSPFSLKSRRHHNFALSGTLQNPFVLSFQKMGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEVEPQAMAPLQAFGRGAVNNLVNWKL Homology
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3) HSP 1 Score: 231.9 bits (590), Expect = 6.2e-60 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3) HSP 1 Score: 229.6 bits (584), Expect = 3.1e-59 Identity = 120/136 (88.24%), Postives = 128/136 (94.12%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3) HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58 Identity = 119/135 (88.15%), Postives = 126/135 (93.33%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3) HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58 Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3) HSP 1 Score: 223.4 bits (568), Expect = 2.2e-57 Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1JIV8 (40S ribosomal protein S17-4 OS=Cucurbita maxima OX=3661 GN=LOC111487331 PE=3 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1HBN9 (40S ribosomal protein S17-4 OS=Cucurbita moschata OX=3662 GN=LOC111461982 PE=3 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A5D3CKV8 (40S ribosomal protein S17-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G001050 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64 Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A6J1BXJ2 (40S ribosomal protein S17-4 OS=Momordica charantia OX=3673 GN=LOC111006610 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64 Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0
BLAST of CmoCh04G026270 vs. ExPASy TrEMBL
Match: A0A1S3C4X5 (40S ribosomal protein S17-3 OS=Cucumis melo OX=3656 GN=LOC103496520 PE=3 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 1.5e-64 Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of CmoCh04G026270 vs. NCBI nr
Match: KAG7032927.1 (40S ribosomal protein S17-4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 280.0 bits (715), Expect = 1.5e-71 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 260.4 bits (664), Expect = 1.2e-65 Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia]) HSP 1 Score: 255.8 bits (652), Expect = 3.1e-64 Identity = 133/136 (97.79%), Postives = 134/136 (98.53%), Query Frame = 0
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal protein S17-3 [Cucumis melo var. makuwa]) HSP 1 Score: 255.8 bits (652), Expect = 3.1e-64 Identity = 133/135 (98.52%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of CmoCh04G026270 vs. NCBI nr
Match: XP_004140911.1 (40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_005187 [Cucumis sativus]) HSP 1 Score: 254.6 bits (649), Expect = 6.8e-64 Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein ) HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein ) HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein ) HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein ) HSP 1 Score: 231.9 bits (590), Expect = 4.4e-61 Identity = 121/135 (89.63%), Postives = 127/135 (94.07%), Query Frame = 0
BLAST of CmoCh04G026270 vs. TAIR 10
Match: AT2G05220.1 (Ribosomal S17 family protein ) HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59 Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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