CmoCh04G025760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G025760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 18845704 .. 18846464 (-)
RNA-Seq ExpressionCmoCh04G025760
SyntenyCmoCh04G025760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATGTACAGTAACACTATGACAGGGCAACCAAGTCTCACCTATCTTGTTATCCAGTCGTGTCGGTTTTTTTACGTTATAAACCCGTCGTATTTCAGTGATTGGTCTAGCTCATGTAATTTGGCTCTTTCTTACATGAAATGAGTTAAGAGTAGCTTGAACTTGCAGGGATTTCATCTACTGTGGTTCTTGTTTCTCTAGGTAACTGCATATGTTACCCCCATTTGATTCCTAGTTATTATCGACCCGGTCGGTTTTGCAGCTACGAAAAGTTTAAGGGTTTTCAGGTTCATATATTTTGTTCATGCCATGCTGTCGTTGGTTTTGGTTGTTTAGTTGGAGCAAAATATTTTGAGGAAGACATGTTGATTTGTCTACATTTAGTTCAACCAATGAGGCTATCGATAGGAAGGCCGACCTCGGCCGACCTCGGCTGCCACGTGACCCTGACATTTGGTGCCCTTTTCTTCTTCGGGTCGAGGTGTACACTTTTGAAGCTAACCATCAGCCCGAAGCAGGCAAGGAGATCGGACTTGTAAGTACTGTTTACCAGGTTTTGCCAATTTGCTGAAACCTATGAGATATGAAATGAGTCCTATTTTTACCATTTGTATCTCTGCTCTAATTATGACCCTACAAACGTAGGATCTATAATATATATAGAGAGAGTATTTATTATAATATTATTATTCTTTTGAAACAATTAAAATGATATTCTAGTTTTAAGAAAAAAAAATTCAAAGTTAATGAAAGTGGAC

mRNA sequence

ATGATCATGTACAGTAACACTATGACAGGGCAACCAAGTCTCACCTATCTTGTTATCCAGTCGTGTCGGTTTTTTTACGTTATAAACCCGTCGTATTTCAGGATTTCATCTACTGTGGTTCTTGTTTCTCTAGGTAACTGCATATGTTACCCCCATTTGATTCCTAGTTATTATCGACCCGGTCGGTTTTGCAGCTACGAAAAGTTTAAGGGTTTTCAGGTTCATATATTTTGTTCATGCCATGCTGTCGTTGGTTTTGGTTGTTTAGTTGGAGCAAAATATTTTGAGGAAGACATGTTGATTTGTCTACATTTAGTTCAACCAATGAGGCTATCGATAGGAAGGCCGACCTCGGCCGACCTCGGCTGCCACGTGACCCTGACATTTGGTGCCCTTTTCTTCTTCGGGTCGAGGTGTACACTTTTGAAGCTAACCATCAGCCCGAAGCAGGCAAGGAGATCGGACTTGTAAGTACTGTTTACCAGGTTTTGCCAATTTGCTGAAACCTATGAGATATGAAATGAGTCCTATTTTTACCATTTGTATCTCTGCTCTAATTATGACCCTACAAACGTAGGATCTATAATATATATAGAGAGAGTATTTATTATAATATTATTATTCTTTTGAAACAATTAAAATGATATTCTAGTTTTAAGAAAAAAAAATTCAAAGTTAATGAAAGTGGAC

Coding sequence (CDS)

ATGATCATGTACAGTAACACTATGACAGGGCAACCAAGTCTCACCTATCTTGTTATCCAGTCGTGTCGGTTTTTTTACGTTATAAACCCGTCGTATTTCAGGATTTCATCTACTGTGGTTCTTGTTTCTCTAGGTAACTGCATATGTTACCCCCATTTGATTCCTAGTTATTATCGACCCGGTCGGTTTTGCAGCTACGAAAAGTTTAAGGGTTTTCAGGTTCATATATTTTGTTCATGCCATGCTGTCGTTGGTTTTGGTTGTTTAGTTGGAGCAAAATATTTTGAGGAAGACATGTTGATTTGTCTACATTTAGTTCAACCAATGAGGCTATCGATAGGAAGGCCGACCTCGGCCGACCTCGGCTGCCACGTGACCCTGACATTTGGTGCCCTTTTCTTCTTCGGGTCGAGGTGTACACTTTTGAAGCTAACCATCAGCCCGAAGCAGGCAAGGAGATCGGACTTGTAA

Protein sequence

MIMYSNTMTGQPSLTYLVIQSCRFFYVINPSYFRISSTVVLVSLGNCICYPHLIPSYYRPGRFCSYEKFKGFQVHIFCSCHAVVGFGCLVGAKYFEEDMLICLHLVQPMRLSIGRPTSADLGCHVTLTFGALFFFGSRCTLLKLTISPKQARRSDL
Homology
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BLAST of CmoCh04G025760 vs. NCBI nr
Match: KAG6602197.1 (Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.0 bits (367), Expect = 2.8e-31
Identity = 71/79 (89.87%), Postives = 71/79 (89.87%), Query Frame = 0 

Query: 1    MIMYSNTMTGQPSLTYLVIQSCRFFYVINPSYFR------ISSTVVLVSLGNCICYPHLI 60
            MIMYSNTMTGQPSLTYLVIQSCRFFYVINPSYF       ISSTVVLVSLGNCICYPHLI
Sbjct: 1179 MIMYSNTMTGQPSLTYLVIQSCRFFYVINPSYFSDWSSSWISSTVVLVSLGNCICYPHLI 1238

Query: 61   PSYYRPGRFCSYEKFKGFQ 74
            PSYYRPGRFCSYEK KGFQ
Sbjct: 1239 PSYYRPGRFCSYEKLKGFQ 1257

The following BLAST results are available for this feature:
BLAST of CmoCh04G025760 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025760 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6602197.12.8e-3189.87Protein GIGANTEA, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of CmoCh04G025760 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025760.1CmoCh04G025760.1mRNA