CmoCh04G025690 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G025690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr04: 18798509 .. 18801076 (-)
RNA-Seq Expression	CmoCh04G025690
Synteny	CmoCh04G025690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGATATGGTGGTTGGATTCTACGCTTCGAGTCGTGTTCCTCGTCAGCGGAACATCGTTACTGACAGAATGGAAGGTATTGTGTGGAAGCTTTGACAATTGGTAAGCATACTGATCTTCCTCATCTGATTACTTTATTACAGAGATCTGATATTGATTTGGTCATCCTCAGGAGATCCGCTAAGATTGAGGATGCTGACCCTTGAAGGAAGGAGTTTGACAACTTGGTCAGCTAAATGGTAAGAATTATTCTTACACTTTTGGTCAAAGTTACTCGACCGTGTTTGACTCAGAAAATTTATCCCCACCGTGTTTGACTCTCCCCTTTCTCCACAACATTTTTTTACAGTGATAGTCATAAAGTTACTCCATACGCTGCATTGAGAGTCTGAGTCTTGGAGCTTTCAGCTGCTTTGTTTGTTGTCAAGAATCGAGGTAAGACCTTGTCTCACGCTACTGTTGGTAGTTGAAATTCATGTTTTTTCTTGTTGGGTTCATCCAGGGCTGTTTATTCATTCCTTGTCTGGTTGTGGTTGGTTCTTTGTTTGCTTTAGTTATGATGATGCTTCTCTGTTTTGTTTAATTACCCTTTTGGATGTTTTGTTTAATCTCCCAAAAGCTTTCTTCCCATTTGAATGCTCTGTGTTTCTTTCTGCCTCTGCCTTGCCTTGCCTTGTCTTTTTTCTTTTGTAATATGATCTTTCTTGATCATCCCCTCTATAAAAGTCGACATTTTTCGAGGTCTCTCCTCCAGTAGAGTTTGACTCAAGTCCACTGCTAGCAGATGTTGTCCGTTTTGACTTGTTATGTTTTGTCGTCAGCCTTACGGTTTTAAAACGCGTCTACTTGGGAGAGGTTTCCGCTCTTATAAAAAATGTTTCGTTTCCCTTTTCAACTAATGTGGGATCTCACAATCCATCCCCTTGGGAGCCCGGTGTCCTCGTTGGCACACTGCCCGGTGTTTGGCTATGATACCATTTATAACAGTCCAAGCCTACCGCTAGCAGATATTATTCGCTTTGGCCCATTATGTATCGTCGTCAGCCACACGGTTTTAAAACGCATCTATTAGGAAGAAGTTTCCACCCCCTTATAAAGAATGTTTCGTTTTTAATAATTCCTTTCGAGAAAGTCAACATTATATTGAACTCTACTGATGATCAAGGTCACTCTTCTGGTTGAGGTCGACTTTCACTGTGCCCTGTAATCTTACATTCCCCAAACAAAAAATCTAACCTTCTCCCATTTTTTTTTTGTTAGTGATGGTTTTTGTGGTATGGCCTTTCTAGAGGATTCCTTCTGATAATTGAATCCCATAAGGTCCCTCATTCTCGTAGAGTTCGACGTTTGGGAATTCTGGTTTCTTCTTGTCCTACTCGATTTCGATCCTTTCGGGTGGCCCTTACCATGCTCTCCACAGCTGATGAACAACTGGCTTTGGCCTACAAATCATCTTTTGATGTTAATGCTTCCTTTTCTGCTAGCCATGAGTTCATGATATTCTTTTCATGATACCTTAGCAGATCGCCCACCAAAAAATCAATATCTTTCAGCAAGAAAAGACACCTTTGATTATATGTTTACAAATTTGACCATTCATTCAGAAACTTGAAAGATTTGTTAGCCCCTGTATTTAATGAAACATTATATGATATCTCGAGCCTATGGTGACTGAACAATATGTCCTTTCCAATAATCACAAACCAAATTATTAAACTAAAAGCCAATGTAAAACGAATCCTTAGGGGCCAAGCCGTGTAGAAATAATTAAGAACAATAAGACCGAATCACATGGAACACACGGTGTCGTTACGAAATTAGAAAGCTACGTGTTACTAGTAATAGAACTTTGTAACAAGTGTCCATAACTTTGAGCTACTATTATCCTTTGCCGTCACCACATTGTATATTTGACTGGACTTTTCCACTTAAATTGCCTTGTCCATTTATTTGGCCATAAGCAAATAGCATATCCATTCGAATTATCTCACCTTGTTTAGTTAAAGGTAAGTATCTTACTGTTATCTTACTCCAACTCCAGTAGACTTAGTTCACGATAATTTATACGAATACGAAAATACTTCTTACCAAAAGGTTAGATGAAAAATTTTCTCACCGGTTTGCATATCATTTTTTATTTTTCGGTCGACGATCTCCAAAATTCAAATCTATTTATTGAAAAATTTTCAATATTCATTTGAGATTAAAATGTAGTCTTCGTAAGTTATAATTTAGCACAATACTTCCTACACAGAGGAGACTTTTTTTTAGAACACTTCTAGTCTTGTCAACAAGTTAATCAACTCAACCCAACTCCCTATATTTACTCTCATACATAAAAAATTGTGAGACGGACAGTTGAGCACCTCAAAGTTTCTACTTTTATTTGCTCTAATCGACTTTATTCTAAATATCTACCTTTACATCTTTCATGTATCCTGCTTTAGTTTTGTCATTCCCTGTCAATCTTCATGGATGGATTGTGATCACTGGTGTGAGCGATTACCAGCAAAGAATATGGTCTCAGTGATGTCAATCCTATGTCCATCTCTTCTGCTCTATTGA

mRNA sequence

ATGAAGGATATGGTGGTTGGATTCTACGCTTCGAGTCGTGTTCCTCGTCAGCGGAACATCGTTACTGACAGAATGGAAGGAGATCCGCTAAGATTGAGGATGCTGACCCTTGAAGGAAGGAGTTTGACAACTTGGTCAGCTAAATGTGATAGTCATAAAGTTACTCCATACGCTGCATTGAGATTGAGCACCTCAAAGTTTCTACTTTTATTTGCTCTAATCGACTTTATTCTAAATATCTACCTTTACATCTTTCATGTATCCTGCTTTAGTTTTGTCATTCCCTGTCAATCTTCATGGATGGATTGTGATCACTGGTGTGAGCGATTACCAGCAAAGAATATGGTCTCAGTGATGTCAATCCTATGTCCATCTCTTCTGCTCTATTGA

Coding sequence (CDS)

ATGAAGGATATGGTGGTTGGATTCTACGCTTCGAGTCGTGTTCCTCGTCAGCGGAACATCGTTACTGACAGAATGGAAGGAGATCCGCTAAGATTGAGGATGCTGACCCTTGAAGGAAGGAGTTTGACAACTTGGTCAGCTAAATGTGATAGTCATAAAGTTACTCCATACGCTGCATTGAGATTGAGCACCTCAAAGTTTCTACTTTTATTTGCTCTAATCGACTTTATTCTAAATATCTACCTTTACATCTTTCATGTATCCTGCTTTAGTTTTGTCATTCCCTGTCAATCTTCATGGATGGATTGTGATCACTGGTGTGAGCGATTACCAGCAAAGAATATGGTCTCAGTGATGTCAATCCTATGTCCATCTCTTCTGCTCTATTGA

Protein sequence

MKDMVVGFYASSRVPRQRNIVTDRMEGDPLRLRMLTLEGRSLTTWSAKCDSHKVTPYAALRLSTSKFLLLFALIDFILNIYLYIFHVSCFSFVIPCQSSWMDCDHWCERLPAKNMVSVMSILCPSLLLY

Homology

[Close]

BLAST of CmoCh04G025690 vs. NCBI nr
Match: KAG6602188.1 (Protein ROH1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 44/62 (70.97%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1   MKDMVVGFYASSRVPRQRNIVTDRMEGDPLRLRMLTLEGRSLTTWSAKCDSHKVTPYAAL 60
           MKDMVVGFYAS  +     I+     GDPLRLRMLTLEGRSLTTWS KC SHKVTPY AL
Sbjct: 372 MKDMVVGFYASRDL-----ILIWSSSGDPLRLRMLTLEGRSLTTWSPKCVSHKVTPYVAL 428

Query: 61  RL 63
           R+
Sbjct: 432 RV 428

The following BLAST results are available for this feature:

BLAST of CmoCh04G025690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025690 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602188.1	1.1e-12	70.97	Protein ROH1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh04G025690 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025690.1	CmoCh04G025690.1	mRNA