CmoCh04G025480 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G025480
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	extensin-like
Location	Cmo_Chr04: 18685046 .. 18685483 (+)
RNA-Seq Expression	CmoCh04G025480
Synteny	CmoCh04G025480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG

mRNA sequence

ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG

Coding sequence (CDS)

ATGGGTTCTTCAAGATTTTCTTCCGGCTTCTACCCACCGGAAAAATGGGTGGAGCAACCACTCCAAATCTCCAAGTACTCCCGGAGTATCAAGAAACCGCCGCTGCCGCCGTCTTCCGCCATTCCCCGCCAGGCGATCATAAAGTACAAGGTGAAGCCGAAGATCATTCACGTGAAAACCCCCGCTGAATTCAAGTACATTGTCCAACTTCTCACCGGCAGCCCCAATCATCCGCCGCCCGATCCTCTTGATTCACCTGTACTCAGTCCTCGGACGCCGCAGTCGCCGCCGCAGCCTGACCCTGTTGATGAATCTGTCCTCAATCCGCCGCCGTGTGAAGAAATCAGCATTTATGATTATGACTGGGAGGAGCCTTCATACCCAATTCCTATTCCTCCTGCCAATTTCAAGAACATTACATCCTCTTACTATCCTTAG

Protein sequence

MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDYDWEEPSYPIPIPPANFKNITSSYYP

Homology

[Close]

BLAST of CmoCh04G025480 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 8.1e-04
Identity = 26/63 (41.27%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 20 PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 74
          PL + K S  IKKPP  P+           IPR+ ++ Y V PK++H  T +EF  +VQ 
Sbjct: 31 PLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHA-TASEFMNVVQR 90

[Close]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL
Match: A0A6J1H6R4 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111460625 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.4e-77
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60
           MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT
Sbjct: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60

Query: 61  PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY 120
           PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY
Sbjct: 61  PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY 120

Query: 121 DWEEPSYPIPIPPANFKNITSSYYP 146
           DWEEPSYPIPIPPANFKNITSSYYP
Sbjct: 121 DWEEPSYPIPIPPANFKNITSSYYP 145

[Close]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL
Match: A0A5A7UXK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00250 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.4e-12
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 7   SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKY 66
           SS  +PP +  +  LQIS  SR+IKKPPLP   A P   ++KY+++P+II+V+TP +FKY
Sbjct: 2   SSSKFPPSEGTKHLLQISNNSRNIKKPPLPTKRAPP---VVKYELEPRIINVQTPTDFKY 61

Query: 67  IVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPDPVDESVLNPPP 112
           IVQLLTG PN PPP      D  D+         +P QPD   + +L+P P
Sbjct: 62  IVQLLTGDPNRPPPVYPCNCDHHDN-------YNNPQQPDDHPQGILSPAP 102

[Close]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL
Match: A0A0A0KCP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 58/141 (41.13%), Postives = 73/141 (51.77%), Query Frame = 0


Query: 11  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 70
           YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLAPVIR------YKYEMDPKIINVKTSVDFTYIVQL 62

Query: 71  LTGSPNHPPP-DPLDSPV----LSPRTPQSPPQPDPVDESVLNPPPCEEISIYDYDWEEP 130
           LTG PNHPPP  P +       LSP      P P     S+LNPP              P
Sbjct: 63  LTGDPNHPPPIYPCNCHQRRLHLSPPPNDFTPPPALPLYSLLNPP----------SLPPP 122

Query: 131 SYP-IPIPPANFKNITSSYYP 146
           S P   +PP+ F+ + +   P
Sbjct: 123 SAPNFKVPPSPFRTLNTEIPP 127

[Close]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL
Match: A0A151TGT1 (Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_012548 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 20 PLQISKYSRSIKKPPLPPSSA----IPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGS 75
          PL+I+K S  IKKPPLPP ++     PRQ II Y V PK+IH  TP +F  +VQ LTGS
Sbjct: 27 PLRINKDSHKIKKPPLPPQASHPQPPPRQPIIIYTVSPKVIHT-TPGDFMNLVQRLTGS 84

[Close]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL
Match: A0A2K3JMU5 (VQ domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g048967 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.5e-05
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 20 PLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTGSPN 77
          PL+I+K S  IKKPPL P + I RQ +I Y V PKIIH  TP EF  +VQ LTGS N
Sbjct: 26 PLRINKNSHKIKKPPLAPQAQI-RQPVIIYTVSPKIIHT-TPNEFMSLVQRLTGSSN 80

[Close]

BLAST of CmoCh04G025480 vs. NCBI nr
Match: XP_022959600.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-76
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60
           MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT
Sbjct: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60

Query: 61  PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY 120
           PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY
Sbjct: 61  PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY 120

Query: 121 DWEEPSYPIPIPPANFKNITSSYYP 146
           DWEEPSYPIPIPPANFKNITSSYYP
Sbjct: 121 DWEEPSYPIPIPPANFKNITSSYYP 145

[Close]

BLAST of CmoCh04G025480 vs. NCBI nr
Match: KAG6602166.1 (hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.5 bits (724), Expect = 1.0e-72
Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60
           MGSSRFSSGFYPPEKWVEQPLQISKYSRSI KPPLPPSSAIPRQAIIKYKVKPKIIHVKT
Sbjct: 1   MGSSRFSSGFYPPEKWVEQPLQISKYSRSINKPPLPPSSAIPRQAIIKYKVKPKIIHVKT 60

Query: 61  PAEFKYIVQLLTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDY 120
           PAEFKYIVQLLTGSPNHPPPD LDSPVLSP  PQSPP+PDPVD+SVLNPPPCEEISIYDY
Sbjct: 61  PAEFKYIVQLLTGSPNHPPPDSLDSPVLSPPPPQSPPRPDPVDDSVLNPPPCEEISIYDY 120

Query: 121 DWEEPSYPIPIPPANFKNITSSYYP 146
           DWEEPSYPIPIPPANFKNITSSYYP
Sbjct: 121 DWEEPSYPIPIPPANFKNITSSYYP 145

[Close]

BLAST of CmoCh04G025480 vs. NCBI nr
Match: KAA0058916.1 (hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714.1 hypothetical protein E5676_scaffold1607G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 51/111 (45.95%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 7   SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKY 66
           SS  +PP +  +  LQIS  SR+IKKPPLP   A P   ++KY+++P+II+V+TP +FKY
Sbjct: 2   SSSKFPPSEGTKHLLQISNNSRNIKKPPLPTKRAPP---VVKYELEPRIINVQTPTDFKY 61

Query: 67  IVQLLTGSPNHPPP------DPLDSPVLSPRTPQSPPQPDPVDESVLNPPP 112
           IVQLLTG PN PPP      D  D+         +P QPD   + +L+P P
Sbjct: 62  IVQLLTGDPNRPPPVYPCNCDHHDN-------YNNPQQPDDHPQGILSPAP 102

[Close]

BLAST of CmoCh04G025480 vs. NCBI nr
Match: XP_038885909.1 (extensin-like [Benincasa hispida])

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-10
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 7   SSGFYPPEKWVEQPLQISKYSRSIKKPPLPPSSA--IPRQAIIKYKVKPKIIHVKTPAEF 66
           SS   PP +  ++  QIS  SR IKKPP PP +A       +++Y+ +PKII V+TP +F
Sbjct: 2   SSSGSPPGEGRKELRQISNNSRKIKKPPRPPKTAKTAAPSPVVRYENEPKIIKVETPQDF 61

Query: 67  KYIVQLLTGSPNHPPPD-PLDSPVLSPRTPQSPPQPDPVDESVLNPPPCE-EISIYDYDW 126
           KYIVQLLTG PN PPP  P  S    P+ P   PQ       +L+P P    + +Y   +
Sbjct: 62  KYIVQLLTGDPNRPPPQYPCTSNDHDPQPPDDRPQ------GILSPTPTSLPLLVYPDAF 121

Query: 127 -----EEPSYPIPIPPAN 136
                  P  P+P+PP++
Sbjct: 122 TPSPSPPPPLPLPLPPSS 133

[Close]

BLAST of CmoCh04G025480 vs. NCBI nr
Match: KAE8647157.1 (hypothetical protein Csa_018820, partial [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.2e-07
Identity = 57/127 (44.88%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 11  YPPEKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 70
           YP  +  +Q LQISK S++IKKPPL P          KY++ PKII+VKT  +F YIVQL
Sbjct: 3   YPGREGRKQVLQISKDSQTIKKPPLAPVIR------YKYEMDPKIINVKTSVDFTYIVQL 62

Query: 71  LTGSPNHPPPDPLDSPVLSPRTPQSPPQPDPVDESVLNPPPCEEISIYDYDWEEPSYPIP 130
           LTG PNHPPP          R   SPP  D        PPP   + +Y      PS P P
Sbjct: 63  LTGDPNHPPP-IYPCNCHQRRLHLSPPPND------FTPPPA--LPLYSL-LNPPSLPPP 112

Query: 131 IPPANFK 138
             P NFK
Sbjct: 123 SAP-NFK 112

[Close]

BLAST of CmoCh04G025480 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 45.1 bits (105), Expect = 5.7e-05
Identity = 26/63 (41.27%), Postives = 35/63 (55.56%), Query Frame = 0


Query: 20 PLQISKYSRSIKKPPLPPSSA---------IPRQAIIKYKVKPKIIHVKTPAEFKYIVQL 74
          PL + K S  IKKPP  P+           IPR+ ++ Y V PK++H  T +EF  +VQ 
Sbjct: 31 PLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVHA-TASEFMNVVQR 90

The following BLAST results are available for this feature:

BLAST of CmoCh04G025480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	8.1e-04	41.27	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]

BLAST of CmoCh04G025480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H6R4	7.4e-77	100.00	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111460625 PE=4 SV=1	[more]
A0A5A7UXK4	6.4e-12	45.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KCP3	2.5e-08	41.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1	[more]
A0A151TGT1	4.5e-05	55.93	Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_012548 PE=4 SV=1	[more]
A0A2K3JMU5	4.5e-05	59.65	VQ domain-containing protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g...	[more]

BLAST of CmoCh04G025480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959600.1	1.5e-76	100.00	extensin-like [Cucurbita moschata]	[more]
KAG6602166.1	1.0e-72	95.86	hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0058916.1	1.3e-11	45.95	hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714...	[more]
XP_038885909.1	1.9e-10	39.86	extensin-like [Benincasa hispida]	[more]
KAE8647157.1	1.2e-07	44.88	hypothetical protein Csa_018820, partial [Cucumis sativus]	[more]

BLAST of CmoCh04G025480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	5.7e-05	41.27	MAP kinase substrate 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025480.1	CmoCh04G025480.1	mRNA