CmoCh04G025250 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G025250
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 18577481 .. 18577793 (+)
RNA-Seq ExpressionCmoCh04G025250
SyntenyCmoCh04G025250
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTAGCATCCAGCTCAATTCAATTTCTGAAATTCCTCGCGATCTTCTCTTTGGACGCCGACAATTTCACGAATATCCTCAAGCATATCTTCCTACAATTTCACGAATTATTATGTTAATCGCCTCCAGTACCAGTATGAGAACGAAAGCCCCAAGTTATCAACAATTTTTGATGCTTCTGATCATTGGGCAGAAATCCCCGTCATACTACAGATCTGTCCTTCACTACGGCAGCAGTTTTGATCTCAAATCCCTCTCTCTTTCTCACGGATATAAGGAACGAACCAGGGGTTTCCATTGCAACCTAG

mRNA sequence

ATGGCCTCTAGCATCCAGCTCAATTCAATTTCTGAAATTCCTCGCGATCTTCTCTTTGGACGCCGACAATTTCACGAATATCCTCAAGCATATCTTCCTACAATTTCACGAATTATTATAAATCCCCGTCATACTACAGATCTGTCCTTCACTACGGCAGCAGTTTTGATCTCAAATCCCTCTCTCTTTCTCACGGATATAAGGAACGAACCAGGGGTTTCCATTGCAACCTAG

Coding sequence (CDS)

ATGGCCTCTAGCATCCAGCTCAATTCAATTTCTGAAATTCCTCGCGATCTTCTCTTTGGACGCCGACAATTTCACGAATATCCTCAAGCATATCTTCCTACAATTTCACGAATTATTATAAATCCCCGTCATACTACAGATCTGTCCTTCACTACGGCAGCAGTTTTGATCTCAAATCCCTCTCTCTTTCTCACGGATATAAGGAACGAACCAGGGGTTTCCATTGCAACCTAG

Protein sequence

MASSIQLNSISEIPRDLLFGRRQFHEYPQAYLPTISRIIINPRHTTDLSFTTAAVLISNPSLFLTDIRNEPGVSIAT
Homology
[Close]
BLAST of CmoCh04G025250 vs. NCBI nr
Match: KAG7032836.1 (hypothetical protein SDJN02_06886, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 8.0e-16
Identity = 59/104 (56.73%), Postives = 66/104 (63.46%), Query Frame = 0 

Query: 1   MASSIQLNSISEIPRDLLFGRRQFHEYPQAYLPTISRIIINPRHTTDL-----SFTTAAV 60
           MASSIQLNSISEIPRDLLFGRRQ HEYPQAYLPTISRII+    +T +     S+    +
Sbjct: 1   MASSIQLNSISEIPRDLLFGRRQLHEYPQAYLPTISRIIMLIASSTSMRTKAPSYQQFLM 60

Query: 61  LI----SNPS------------------LFLTDIRNEPGVSIAT 78
           L+     +PS                  LFLTDIRNEPGVSIAT
Sbjct: 61  LLIIGQKSPSYYRSVLHYGSSFDFESLVLFLTDIRNEPGVSIAT 104

[Close]
BLAST of CmoCh04G025250 vs. NCBI nr
Match: KAG6602146.1 (hypothetical protein SDJN03_07379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 93.2 bits (230), Expect = 1.0e-15
Identity = 58/104 (55.77%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1   MASSIQLNSISEIPRDLLFGRRQFHEYPQAYLPTISRIIINPRHTTDLS---------FT 60
           MASSIQLNSISEIPRDLLFGRRQ HEYPQAYLPTISRII+    +T +          F 
Sbjct: 1   MASSIQLNSISEIPRDLLFGRRQLHEYPQAYLPTISRIIMLIASSTSMRTKAPSYQQFFM 60

Query: 61  TAAVLISNPS------------------LFLTDIRNEPGVSIAT 78
              +   +PS                  LFLTDIRNEPGVSIAT
Sbjct: 61  LLIIGQKSPSYYRSVLHYGSSFDFESLVLFLTDIRNEPGVSIAT 104

The following BLAST results are available for this feature:
BLAST of CmoCh04G025250 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025250 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G025250 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032836.18.0e-1656.73hypothetical protein SDJN02_06886, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6602146.11.0e-1555.77hypothetical protein SDJN03_07379, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G025250 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025250.1CmoCh04G025250.1mRNA