CmoCh04G025110 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G025110
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 18503854 .. 18504285 (+)
RNA-Seq ExpressionCmoCh04G025110
SyntenyCmoCh04G025110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

mRNA sequence

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

Protein sequence

MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIGNKAGDGKAKSVLPLIAETAVTSTGTLTDSHGYRVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIADYQ
Homology
BLAST of CmoCh04G025110 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.0e-05
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 93  RVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIA 141
           RVG  K KS I K+RKLVKTM+YH +K+FL SLFR   + HN PKPI+
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPIS 79

BLAST of CmoCh04G025110 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 74  LIAETAVTSTGTLTDSHGYRVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETH 133
           +I+E AVT+ G +    G R G GK KS I KRR LVKTM+Y+ IK+F+ SLFR PP   
Sbjct: 32  MISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAV 91

Query: 134 NGPKP 139
             P P
Sbjct: 92  PEPPP 91

BLAST of CmoCh04G025110 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 278.1 bits (710), Expect = 4.3e-71
Identity = 137/143 (95.80%), Postives = 137/143 (95.80%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIG 60
           MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVL LIPANPETAVMSTRPVIG
Sbjct: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLRLIPANPETAVMSTRPVIG 60

Query: 61  NKAGDGKAKSVLPLIAETAVTSTGTLTDSHGYRVGIGKGKSEISKRRKLVKTMMYHCIKN 120
           NKAGDGKAKSVLPLIAETAVTSTGTLTDSHGYRVGIGKGKS I KRRKLVKTMMYHCIKN
Sbjct: 61  NKAGDGKAKSVLPLIAETAVTSTGTLTDSHGYRVGIGKGKSVIPKRRKLVKTMMYHCIKN 120

Query: 121 FLKSLFRRPPETHNGPKPIADYQ 144
           FLKSLFRRPPETHN PKPI  YQ
Sbjct: 121 FLKSLFRRPPETHNRPKPITGYQ 143

BLAST of CmoCh04G025110 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 180.6 bits (457), Expect = 9.3e-42
Identity = 101/167 (60.48%), Postives = 116/167 (69.46%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPK---------------------S 60
           MRFRVSPD NRV+P+ +PT H+ PS+NA+HLAPIDP K                     S
Sbjct: 1   MRFRVSPDDNRVLPEQNPTAHYLPSINANHLAPIDPAKSEISTLTKPAIPYQVGDGKAQS 60

Query: 61  VLPLIPANPETAVMSTRPVIGNKAGDGKAKSVLPL---IAETAVTSTGTLTDSHGYRVGI 120
           VL  IPANPETAV+ST P +  +  DGKA+SVLPL     ETAVTST +L    GYR G+
Sbjct: 61  VLTFIPANPETAVVSTMPAVPYQVADGKAQSVLPLTPATPETAVTSTNSL----GYRAGV 120

Query: 121 GKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIADYQ 144
           GK KS I K+RKLVKTMMYHCIKNF+KSLFRRPP+THN PKPI D Q
Sbjct: 121 GKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPKTHNRPKPITDDQ 163

BLAST of CmoCh04G025110 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-30
Identity = 84/143 (58.74%), Postives = 99/143 (69.23%), Query Frame = 0

Query: 1   MRFRVSPDHNRVIPDPHPTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIG 60
           MRFRVSPD NR +P+ +PT HHPPS+N +HL PIDP KS +  +          T+  I 
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATL----------TKLAIP 60

Query: 61  NKAGDGKAKSVLPLI---AETAVTSTGTLTDSHGYRVGIGKGKSEISKRRKLVKTMMYHC 120
            +  DGKAKSVLPLI    +TAVTST ++     YR GIGK KS I K+RKLVKTMMYHC
Sbjct: 61  YQICDGKAKSVLPLIPAKPDTAVTSTNSVE----YRAGIGKVKSVIPKKRKLVKTMMYHC 120

Query: 121 IKNFLKSLFRRPPETH-NGPKPI 140
           IK+FLKSLFR PP+TH   PKPI
Sbjct: 121 IKDFLKSLFRPPPKTHRRRPKPI 129

BLAST of CmoCh04G025110 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-05
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0

Query: 93  RVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIA 141
           RVG  K KS I K+RKLVKTM+YH +K+FL SLFR   + HN PKPI+
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPIS 79

BLAST of CmoCh04G025110 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 4.5e-04
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0

Query: 74  LIAETAVTSTGTLTDSHGYRVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETH 133
           +I+E AVT+ G +    G R G GK KS I KRR LVKTM+Y+ IK+F+ SLFR PP   
Sbjct: 32  MISEMAVTANGAI----GSRAG-GKVKSVIPKRRILVKTMIYNFIKDFIISLFRPPPSAV 91

Query: 134 NGPKP 139
             P P
Sbjct: 92  PEPPP 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ72.0e-0562.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW32.2e-0452.31uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
KAG6602132.14.3e-7195.80hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602131.19.3e-4260.48hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.11.6e-3058.74hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647260.14.1e-0562.50hypothetical protein Csa_018328, partial [Cucumis sativus][more]
XP_022141661.14.5e-0452.31uncharacterized protein LOC111011963 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G025110.1CmoCh04G025110.1mRNA