CmoCh04G024970 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G024970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptiontrichohyalin-like
LocationCmo_Chr04: 18370342 .. 18371477 (+)
RNA-Seq ExpressionCmoCh04G024970
SyntenyCmoCh04G024970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCAGGTTTCATGTCCCTCTCTTCACGAAGCTGGTATAGTTTGTGCTGGTAGACAAGCCATTGATACCTTCATTTCAAGCGAAAAGGAGTTAAGCAACGGAAAATTAACCAAACCGAAAAGAATCAACCACAGGAACATACAGTGTTTGAGCATCGGTACCGAAGCCCGAAAGGCCAAGAAATAGCTAATCATGAGTCCGATAAATTTTCTGGAAATCTGTGGCAATTGTCTGTGTTAGTAACAGAAAAAGAAAACTTGAAACATCAGAAGAATTGGAGAAATCTCTCCTCCTATTCTGAAACTGGCTATTATATAGCATTACACAATCAATTCTGATATTACTAAATGAGGTATTCTGAAACTGGCTATTATATAGCATTACACTATCCGAATATGACTAAATCAAATCTAATTCAACTAACTAAATCAAATCTAATTTAAATAACTAAATCAAATCTAATTTAAATAACTCAATCAAATCTAATAAAAAACAATTTAATACCACAATGTCTGAACTACATCAAGCTAAAAATTCCAAAAGAATGGCAGTAATGCTACTGAAGAGAAACGCACCGGTATTAGGTCCGCTACTCGAGCTTTCCTGGAACAAAGTATGAGAATCTTAATCTTTGTGACATGAGAACAAGAAAAAACAAGAGAGAATCGTCAGCTCAGAGCGATCGGAAACGTTTGTACCGAAATCAAATCAATGAAACGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGCACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGAAATGCGGGAAGCAGCGACTCAGTGGATTGTAGTACAGCTCTATTAA

mRNA sequence

ATGTCTCAGGTCCGCTACTCGAGCTTTCCTGGAACAAAGTATGAGAATCTTAATCTTTGTGACATGAGAACAAGAAAAAACAAGAGAGAATCGTCAGCTCAGAGCGATCGGAAACGTTTGTACCGAAATCAAATCAATGAAACGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGCACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGAAATGCGGGAAGCAGCGACTCAGTGGATTGTAGTACAGCTCTATTAA

Coding sequence (CDS)

ATGTCTCAGGTCCGCTACTCGAGCTTTCCTGGAACAAAGTATGAGAATCTTAATCTTTGTGACATGAGAACAAGAAAAAACAAGAGAGAATCGTCAGCTCAGAGCGATCGGAAACGTTTGTACCGAAATCAAATCAATGAAACGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGAACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGGACTAAAACATGTAGAGATATGTATTGAAGTTGTGAAGATTGAAGGAAGAAATCCGCACCTGAGAGAAGAGAGAGTTGAATCGCAAGGAGAAATGCGGGAAGCAGCGACTCAGTGGATTGTAGTACAGCTCTATTAA

Protein sequence

MSQVRYSSFPGTKYENLNLCDMRTRKNKRESSAQSDRKRLYRNQINETQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQGEMREAATQWIVVQLY
Homology
BLAST of CmoCh04G024970 vs. ExPASy TrEMBL
Match: A0A4Z2HYN4 (Uncharacterized protein OS=Liparis tanakae OX=230148 GN=EYF80_019051 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.1e-07
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 56  EICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHV 115
           E+ +E VK EGR+  +R E V+ +G  +  E+ +E VK EGR   +R E  + QG  +  
Sbjct: 14  EMRVEEVKREGRSDEMRVEEVKREG--RGDEMRVEEVKREGRGDEMRVEEAKRQG--RGD 73

Query: 116 EICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQG 171
           E+ +E VK EGR   +R E V+ +G     E+ +E VK EGR+  LR E ++ +G
Sbjct: 74  EMRVEEVKREGREDEMRVEEVKREGNSD--EMRVEEVKREGRSDELRVEELKREG 122

BLAST of CmoCh04G024970 vs. ExPASy TrEMBL
Match: V6LLP0 (Uncharacterized protein OS=Spironucleus salmonicida OX=348837 GN=SS50377_14564 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.4e-05
Identity = 38/116 (32.76%), Postives = 71/116 (61.21%), Query Frame = 0

Query: 60   EVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICI 119
            EVVK +G+   L+ E V++ G ++ ++   EVVK +G+   L+ E V++ G ++ ++   
Sbjct: 1276 EVVKADGKVEQLKNEVVKADGNVEQLK--NEVVKADGKVEQLKNEVVKADGNVEQLK--N 1335

Query: 120  EVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQGEMREA 176
            EVVK +G+   L+ E V++ G ++ ++   EVVK +G+   L+ E  E++GE+  A
Sbjct: 1336 EVVKADGKVEQLKNEVVKADGKVEQLK--NEVVKADGKVEQLKNEVDEAEGELTTA 1385

BLAST of CmoCh04G024970 vs. ExPASy TrEMBL
Match: A0A6P6NDE4 (trichohyalin-like OS=Carassius auratus OX=7957 GN=LOC113078422 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = 0

Query: 23  RTRKNKRESSAQSDRKRLYRNQINETQGGLKHVEICIEVVKIEGRNPNLREERVESQGGL 82
           R    + E   Q D+      +  E +   +  EI ++  ++E R    +EERVES+ G 
Sbjct: 203 RVESERGEIEVQEDQVERREMEEQEERVESERGEIEVQEDQVERREMEEQEERVESERG- 262

Query: 83  KHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGL 142
              EI ++  ++E      +EERVES+ G    EI ++  ++E R    +EERVES+ G 
Sbjct: 263 ---EIEVQEDQVERLEMEEQEERVESERG----EIEVQEDQVERREMEEQEERVESERG- 322

Query: 143 KHVEICIEVVKIEGRNPHLREERVESQ 170
              EI ++  ++E R    +EERVES+
Sbjct: 323 ---EIEVQEDQVERREMEEQEERVESE 337

BLAST of CmoCh04G024970 vs. NCBI nr
Match: TNN70768.1 (hypothetical protein EYF80_019051 [Liparis tanakae])

HSP 1 Score: 65.9 bits (159), Expect = 4.3e-07
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 0

Query: 56  EICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHV 115
           E+ +E VK EGR+  +R E V+ +G  +  E+ +E VK EGR   +R E  + QG  +  
Sbjct: 14  EMRVEEVKREGRSDEMRVEEVKREG--RGDEMRVEEVKREGRGDEMRVEEAKRQG--RGD 73

Query: 116 EICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQG 171
           E+ +E VK EGR   +R E V+ +G     E+ +E VK EGR+  LR E ++ +G
Sbjct: 74  EMRVEEVKREGREDEMRVEEVKREGNSD--EMRVEEVKREGRSDELRVEELKREG 122

BLAST of CmoCh04G024970 vs. NCBI nr
Match: XP_025752877.1 (golgin subfamily A member 6-like protein 22 [Oreochromis niloticus])

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-05
Identity = 38/122 (31.15%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 53  KHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGL 112
           K+ E+  E +K+E +N  L EE+ + +   K+ E+  E  K+E RN  L EE+++ +   
Sbjct: 11  KNKELEEEKIKLEDKNKELEEEKTKLED--KNKELEEEKTKLEDRNKELEEEKIKLED-- 70

Query: 113 KHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQGEM 172
           K+ E+  E +K+E +N  L EE+++ +   K +E   E +K+E +N  L EE+++ + + 
Sbjct: 71  KNKELEEEKIKLEDKNKELEEEKIKLEDRNKELE--EEKIKLEDKNKELEEEKIKLEDKN 126

Query: 173 RE 175
           +E
Sbjct: 131 KE 126

BLAST of CmoCh04G024970 vs. NCBI nr
Match: EST45492.1 (Hypothetical protein SS50377_14564 [Spironucleus salmonicida])

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-04
Identity = 38/116 (32.76%), Postives = 71/116 (61.21%), Query Frame = 0

Query: 60   EVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICI 119
            EVVK +G+   L+ E V++ G ++ ++   EVVK +G+   L+ E V++ G ++ ++   
Sbjct: 1276 EVVKADGKVEQLKNEVVKADGNVEQLK--NEVVKADGKVEQLKNEVVKADGNVEQLK--N 1335

Query: 120  EVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQGEMREA 176
            EVVK +G+   L+ E V++ G ++ ++   EVVK +G+   L+ E  E++GE+  A
Sbjct: 1336 EVVKADGKVEQLKNEVVKADGKVEQLK--NEVVKADGKVEQLKNEVDEAEGELTTA 1385

BLAST of CmoCh04G024970 vs. NCBI nr
Match: XP_025753541.1 (golgin subfamily A member 6-like protein 22 [Oreochromis niloticus])

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-04
Identity = 35/122 (28.69%), Postives = 68/122 (55.74%), Query Frame = 0

Query: 53  KHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPNLREERVESQGGL 112
           K+ E+  E  K+E +N  L EE+++ +   K+ E+  E  K+E +N  L EE+++ +   
Sbjct: 158 KNKELEEEKTKLENKNKELEEEKIKLED--KNKELEEEKTKLENKNKELEEEKIKLEDKN 217

Query: 113 KHVEICIEVVKIEGRNPNLREERVESQGGLKHVEICIEVVKIEGRNPHLREERVESQGEM 172
           K +E   E +K+E +N  L EE+ + +   K+ EI  E  K+E +N  + +++ + +   
Sbjct: 218 KELE---EEIKLEDKNKELEEEKTKLED--KNKEIQKEKTKLEAKNKEMEQKKKKLEDRN 272

Query: 173 RE 175
           +E
Sbjct: 278 KE 272

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4Z2HYN42.1e-0738.26Uncharacterized protein OS=Liparis tanakae OX=230148 GN=EYF80_019051 PE=4 SV=1[more]
V6LLP07.4e-0532.76Uncharacterized protein OS=Spironucleus salmonicida OX=348837 GN=SS50377_14564 P... [more]
A0A6P6NDE48.2e-0431.97trichohyalin-like OS=Carassius auratus OX=7957 GN=LOC113078422 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TNN70768.14.3e-0738.26hypothetical protein EYF80_019051 [Liparis tanakae][more]
XP_025752877.11.1e-0531.15golgin subfamily A member 6-like protein 22 [Oreochromis niloticus][more]
EST45492.11.5e-0432.76Hypothetical protein SS50377_14564 [Spironucleus salmonicida][more]
XP_025753541.17.6e-0428.69golgin subfamily A member 6-like protein 22 [Oreochromis niloticus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024970.1CmoCh04G024970.1mRNA