CmoCh04G024700 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G024700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	photosystem II 22 kDa protein, chloroplastic-like
Location	Cmo_Chr04: 18247639 .. 18249613 (-)
RNA-Seq Expression	CmoCh04G024700
Synteny	CmoCh04G024700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACGCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTAATTGTCGCGTTTTCTTTTTCAGAGGAATTTATGAATCTGAGAAGAAGTAATTTAGGTTTTCTGGTTTGATTTGGTTTGTTTAGGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGTGAGTTCTTTCTCCACGCTTTTCCGCTTCGAATTCTTTCGGTTTAAGCACATTGAATTAGAAATGTATGGATCTATGTTCATGATTATGAAATTTAGGGTTTTTTTTTTTTTTTTTGTGAATTTTCTTTTTAACTCATTATTTTTCTTAATTTTTTTAACCTATTTTTACTTATTTTTTAAAAAACTAATTCCAATTGGATATACATTTTGTTTTTGTTCTTTTGTATAATTGAACTTGTAATTATTATTTATGGATATTTGAAGTATATTAAGAATTTTAATATTTTCTCTAGAAAAGTGAAGTTCATAATAAAAAAATTAATTAATTAACTAACTCAAATTAAAAAAAAAAAATATATATATATATATATATATAACTTAAGGAGAGTATTTTTGTTTATAGAGCAAATATTTTCTTAAGAAATTAAAAATCATGGTAGAGAAATAATGAGAAAATAAACCCATTTTATATATAGTTATTTTTGTAATACTATTATTAAATAATTGCATAAATATTTGTCATATTTTTGTGGGGATAAATTATTTAATTATGGCAAATATGAGTGTAATTAATTTCATTTGTTATTTTAATTAATTATTTTGTTAAATTGTAAACCCTAAATTTAAAAAAGGTTAGAATTTTGTTATTTATTAAAATATCAGGAATAGTTAAATAAAATAATTAATTAAAATTTGCAGGCGTCGTTGCTGGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATTGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTGAGTTGCAGTACAGTGCAAACGAATTGTTCGATTAAATCTCGATAAATCAAATCTTAACATCAAATTCACGACGGCTCTGTTTTTGTATAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAATGAATGGATCGATTCTGCTTTAGTTTCTCTGTACATGAACTTAGAGTTTGTGCAGTTTTAGCGTATTTATTTTGCATCAGCGCCCAAAAACAACGAATCTAAGGAACAAACCTTGGCTAGTGAATTGTAGGAAACCTGCAATATTTCTTTAAATTTGAGGCACAACTTGATAAGATAATCGATTTTGATTTTATTTCTAAAAATATTATAAATTATGATCATGGTGTATATATATATATATAAACCACAATGATATGATATTGTCCA

mRNA sequence

ATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACGCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTAATTGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGCGTCGTTGCTGGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATTGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAATGAATGGATCGATTCTGCTTTAGTTTCTCTGTACATGAACTTAGAGTTTGTGCAGTTTTAGCGTATTTATTTTGCATCAGCGCCCAAAAACAACGAATCTAAGGAACAAACCTTGGCTAGTGAATTGTAGGAAACCTGCAATATTTCTTTAAATTTGAGGCACAACTTGATAAGATAATCGATTTTGATTTTATTTCTAAAAATATTATAAATTATGATCATGGTGTATATATATATATATAAACCACAATGATATGATATTGTCCA

Coding sequence (CDS)

ATGGCGGCTCAAACCATGGTTCTTTCCTCCGGTGTGTGCGCCAGCCATGGCGTAGCGTTGAAGAGAGAAATCGCTTCGTTGACGCAGAGGCTTAGACCTAACGCCCAATTTAGTCGCTTGTTTTTCAATCCTCTGCCTTCGAGTTCCGTTTCTTTACCTGCGCGTGGATTTAGGACTCTTGCGATCTTTAAATCGAAGGCGAAAGTGCCGGCGAAGAAGGTAATTGTTGTGAAGCCGAAGGAGAAGGTTGAAGACGGCATTTTCGGGACGTCTGGTGGCATTGGTTTCACTAAGCAGAATGAACTGTTCGTCGGCCGTGTCGCCATGATCGGCTTTGCTGCGTCGTTGCTGGGAGAGGGAATCACCGGAAAGGGAATTCTGGCTCAACTGAATTTAGAAACTGGAGTTCCGATTTACGAAGCGGAGCCTCTTCTTCTGTTCTTCATCTTATTCACTCTTCTCGGAGCCATTGGAGCGCTAGGAGACCGTGGAAAATTCATCGACGATCCAGAACCAGCCACCGGACTGGAACGCGCCGTTATCCCTCCCGGCAAGGGCCTCAGATCGGCGCTAGGTCTCAAAGAAGGAGGTCCGTTGTTCGGATTCACGAAGGCAAATGAGCTGTTCGTCGGAAGATTGGCGCAGCTAGGGTTTGCGTTCTCGCTGATCGGAGAAATTATTACAGGTAAGGGAGCGTTGGCGCAGTTGAACATTGAGACGGGAGTGCCGATCAATGAAATTGAGCCGCTGGTTTTGTTGAACGTTCTGTTTTTCTTCATTGCTGCTGTGAATCCTGGAACTGGTAAATTCGTCACTGACGAGGAAGAGGATTAA

Protein sequence

MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED

Homology

[Close]

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot
Match: Q02060 (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSBS PE=1 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 4.2e-110
Identity = 212/279 (75.99%), Postives = 241/279 (86.38%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKRE--IASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFR 60
           MA   +++  GV  ++ + LKR   +    Q+++P +  S LFF+PLPSSS S  +  F+
Sbjct: 1   MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSS-SSSSTVFK 60

Query: 61  TLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLG 120
           TLA+FKSKAK P K   V KPK KVEDG+FGTSGGIGFTK+NELFVGRVAMIGFAASLLG
Sbjct: 61  TLALFKSKAKAPKK---VEKPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLG 120

Query: 121 EGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLER 180
           EGITGKGIL+QLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRG+F+D  EP TGLE+
Sbjct: 121 EGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVD--EPTTGLEK 180

Query: 181 AVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 240
           AVIPPGK +RSALGLK  GPLFGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNI
Sbjct: 181 AVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 240

Query: 241 ETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           ETGVPINEIEPLVLLNV+FFFIAA+NPGTGKF+TD+EE+
Sbjct: 241 ETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEEE 273

[Close]

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot
Match: Q9FPP4 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN=PSBS PE=2 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 7.4e-107
Identity = 209/281 (74.38%), Postives = 229/281 (81.49%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLP----SSSVSLPARGF- 62
           AQTM+L++           R   SL +RL+P    S LF   LP    SS+ +  +  F 
Sbjct: 2   AQTMLLTANAKVD-----LRSKESLVERLKPK-PLSSLFLPSLPLRFSSSTTNFSSSKFT 61

Query: 63  -RTLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 122
             T+A+FKSKAK P KKV   K K+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL
Sbjct: 62  STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 121

Query: 123 LGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGL 182
           LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRG+FIDDP PATGL
Sbjct: 122 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGL 181

Query: 183 ERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 242
           E+AVIPPGK  +SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQL
Sbjct: 182 EKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 241

Query: 243 NIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           N ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEEED
Sbjct: 242 NFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot
Match: P54773 (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBS PE=3 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 9.7e-107
Identity = 209/281 (74.38%), Postives = 228/281 (81.14%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLP----SSSVSLPARGF- 62
           AQTM+L++           R   SL +RL+P    S LF   LP    SSS +  +  F 
Sbjct: 2   AQTMLLTANAKVD-----LRSKESLVERLKPK-PLSSLFLPSLPLRFSSSSTNASSSKFT 61

Query: 63  -RTLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 122
             T+A+FKSKAK P KKV   K K+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL
Sbjct: 62  STTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 121

Query: 123 LGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGL 182
           LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGALGDRGKF+DDP P TGL
Sbjct: 122 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGL 181

Query: 183 ERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 242
           E+AVIPPGK  +SALGL EGGPLFGFTKANELFVGRLAQLG AFS+IGEIITGKGALAQL
Sbjct: 182 EKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 241

Query: 243 NIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           N ETGVPINEIEPL+L N+ FFF AA+NPGTGKF+TDEEED
Sbjct: 242 NFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEED 276

[Close]

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot
Match: Q9SMB4 (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBS PE=2 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 4.8e-106
Identity = 211/281 (75.09%), Postives = 231/281 (82.21%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNP-----LPSSSVSLPAR-G 62
           AQTM+L++           R   SL +RL+P    S  FF P      PS+S S  +   
Sbjct: 2   AQTMLLTANAKVD-----LRSKESLVERLKPKPLSS--FFLPSLPLKYPSASASASSHFT 61

Query: 63  FRTLAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 122
             T+A+FKSKAK PAKKV V KPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL
Sbjct: 62  STTVALFKSKAKAPAKKV-VPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASL 121

Query: 123 LGEGITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGL 182
           LGE ITGKGILAQLNLETG+PIYEAEPLLLFFILF LLGAIGAL DRGKFIDDP P TGL
Sbjct: 122 LGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGL 181

Query: 183 ERAVIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 242
           ++AVIPPGKG +SALGL EGGPLF FTKANELFVGRLAQLG AFS+IGEIITGKGALAQL
Sbjct: 182 DKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGKGALAQL 241

Query: 243 NIETGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           N ETGVPINEIEPL+L N++FFF+AA+NPGTGKFVTDEEE+
Sbjct: 242 NFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEEE 274

[Close]

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot
Match: Q9XF91 (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBS PE=2 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.6e-101
Identity = 204/277 (73.65%), Postives = 225/277 (81.23%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPAR--GFRTL 62
           AQTM+L+SGV A H +  K  +A          +   LF +   +S V+LP+R   F  L
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA--------QPKVHHLFLS--GNSPVALPSRRQSFVPL 61

Query: 63  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
           A+FK K K   KK  V KPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE 
Sbjct: 62  ALFKPKTKAAPKK--VEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           +TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AV
Sbjct: 122 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAV 181

Query: 183 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGK +RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIET
Sbjct: 182 IPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 241

Query: 243 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           G+PI +IEPLVLLNV FFF AA+NPG GKF+TD+ E+
Sbjct: 242 GIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL
Match: A0A6J1GLX6 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455493 PE=4 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 4.2e-145
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           AIFKSKAKVPAKK  VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG
Sbjct: 61  AIFKSKAKVPAKK--VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV
Sbjct: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL
Match: A0A6J1JV31 (photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111487764 PE=4 SV=1)

HSP 1 Score: 519.2 bits (1336), Expect = 1.0e-143
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLT+RLRPNAQ SRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           AIFKSKAKVPAKK  VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG
Sbjct: 61  AIFKSKAKVPAKK--VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV
Sbjct: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL
Match: A0A0A0K7N4 (Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1)

HSP 1 Score: 466.8 bits (1200), Expect = 6.1e-128
Identity = 244/278 (87.77%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60

Query: 61  LAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120
           LA+FKS+ K P KK  V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE
Sbjct: 61  LAVFKSRTKAPPKK--VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGE 120

Query: 121 GITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180
            ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA
Sbjct: 121 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180

Query: 181 VIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240
           VIPPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE
Sbjct: 181 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240

Query: 241 TGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           TGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL
Match: A0A5A7UZ08 (Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00970 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.8e-127
Identity = 244/278 (87.77%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRP-NAQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRP N QF+RLFFNPLP+ SVSLPARGF  
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNNNQFTRLFFNPLPNHSVSLPARGFTP 60

Query: 61  LAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120
           LA+FKS+ K P KK  V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE
Sbjct: 61  LAVFKSRTKAPPKK--VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120

Query: 121 GITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180
            ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA
Sbjct: 121 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180

Query: 181 VIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240
           VIPPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE
Sbjct: 181 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240

Query: 241 TGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           TGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL
Match: A0A1S3CS23 (photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504056 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.8e-127
Identity = 244/278 (87.77%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRP-NAQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRP N QF+RLFFNPLP+ SVSLPARGF  
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNNNQFTRLFFNPLPNHSVSLPARGFTP 60

Query: 61  LAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120
           LA+FKS+ K P KK  V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE
Sbjct: 61  LAVFKSRTKAPPKK--VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120

Query: 121 GITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180
            ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA
Sbjct: 121 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180

Query: 181 VIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240
           VIPPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE
Sbjct: 181 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240

Query: 241 TGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           TGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of CmoCh04G024700 vs. NCBI nr
Match: XP_022952982.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_023545993.1 photosystem II 22 kDa protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >KAG7032798.1 Photosystem II 22 kDa protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 523.9 bits (1348), Expect = 8.7e-145
Identity = 275/277 (99.28%), Postives = 275/277 (99.28%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           AIFKSKAKVPAKK  VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG
Sbjct: 61  AIFKSKAKVPAKK--VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV
Sbjct: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CmoCh04G024700 vs. NCBI nr
Match: XP_022991058.1 (photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 519.2 bits (1336), Expect = 2.1e-143
Identity = 273/277 (98.56%), Postives = 274/277 (98.92%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTMVLSSGVCASHGVALKREIASLT+RLRPNAQ SRLFFNPLPSSSVSLPARGFRTL
Sbjct: 1   MAAQTMVLSSGVCASHGVALKREIASLTRRLRPNAQSSRLFFNPLPSSSVSLPARGFRTL 60

Query: 61  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           AIFKSKAKVPAKK  VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG
Sbjct: 61  AIFKSKAKVPAKK--VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV
Sbjct: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 275

[Close]

BLAST of CmoCh04G024700 vs. NCBI nr
Match: KAG6602094.1 (Photosystem II 22 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 515.8 bits (1327), Expect = 2.4e-142
Identity = 270/272 (99.26%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 6   MVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKS 65
           MVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKS
Sbjct: 1   MVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTLAIFKS 60

Query: 66  KAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKG 125
           KAKVPAKK  VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKG
Sbjct: 61  KAKVPAKK--VVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEGITGKG 120

Query: 126 ILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK 185
           ILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK
Sbjct: 121 ILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAVIPPGK 180

Query: 186 GLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 245
           GLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN
Sbjct: 181 GLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 240

Query: 246 EIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           EIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED
Sbjct: 241 EIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 270

[Close]

BLAST of CmoCh04G024700 vs. NCBI nr
Match: XP_038885143.1 (photosystem II 22 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 477.6 bits (1228), Expect = 7.1e-131
Identity = 249/277 (89.89%), Postives = 258/277 (93.14%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPARGFRTL 60
           MAAQTM+L+SGVC  HGV +KRE+     RLRPNAQFSRLFFNPLPS SVSLPARGF TL
Sbjct: 1   MAAQTMLLTSGVCVGHGVGVKREL-----RLRPNAQFSRLFFNPLPSHSVSLPARGFTTL 60

Query: 61  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 120
           A+FKS+ K P KK  V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 
Sbjct: 61  AVFKSRTKAPPKK--VSKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 120

Query: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180
           ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV
Sbjct: 121 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 180

Query: 181 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240
           IPPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET
Sbjct: 181 IPPGKNFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 240

Query: 241 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           GVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 GVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 270

[Close]

BLAST of CmoCh04G024700 vs. NCBI nr
Match: XP_004150442.1 (photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hypothetical protein Csa_018297 [Cucumis sativus])

HSP 1 Score: 466.8 bits (1200), Expect = 1.3e-127
Identity = 244/278 (87.77%), Postives = 256/278 (92.09%), Query Frame = 0


Query: 1   MAAQTMVLSSGVCASHGVALKREIASLTQRLRPN-AQFSRLFFNPLPSSSVSLPARGFRT 60
           MAAQTM+L+SGVC  HGV LKRE++     LRPN  QF+RLFFNPLPS SVSLP RGF T
Sbjct: 1   MAAQTMLLTSGVCVGHGVCLKRELS-----LRPNYTQFTRLFFNPLPSHSVSLPPRGFTT 60

Query: 61  LAIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGE 120
           LA+FKS+ K P KK  V KPK+KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAAS+LGE
Sbjct: 61  LAVFKSRTKAPPKK--VEKPKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASILGE 120

Query: 121 GITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180
            ITGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA
Sbjct: 121 AITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERA 180

Query: 181 VIPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240
           VIPPGK  RSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE
Sbjct: 181 VIPPGKSFRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 240

Query: 241 TGVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           TGVPINEIEPLVLLNV+FFFIAAVNPGTGKFVTDEE+D
Sbjct: 241 TGVPINEIEPLVLLNVVFFFIAAVNPGTGKFVTDEEDD 271

[Close]

BLAST of CmoCh04G024700 vs. TAIR 10
Match: AT1G44575.1 (Chlorophyll A-B binding family protein )

HSP 1 Score: 370.5 bits (950), Expect = 1.1e-102
Identity = 204/277 (73.65%), Postives = 225/277 (81.23%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPAR--GFRTL 62
           AQTM+L+SGV A H +  K  +A          +   LF +   +S V+LP+R   F  L
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA--------QPKVHHLFLS--GNSPVALPSRRQSFVPL 61

Query: 63  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
           A+FK K K   KK  V KPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE 
Sbjct: 62  ALFKPKTKAAPKK--VEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           +TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AV
Sbjct: 122 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAV 181

Query: 183 IPPGKGLRSALGLKEGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIET 242
           IPPGK +RSALGLKE GPLFGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIET
Sbjct: 182 IPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIET 241

Query: 243 GVPINEIEPLVLLNVLFFFIAAVNPGTGKFVTDEEED 278
           G+PI +IEPLVLLNV FFF AA+NPG GKF+TD+ E+
Sbjct: 242 GIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGEE 264

[Close]

BLAST of CmoCh04G024700 vs. TAIR 10
Match: AT1G44575.2 (Chlorophyll A-B binding family protein )

HSP 1 Score: 234.2 bits (596), Expect = 1.3e-61
Identity = 136/197 (69.04%), Postives = 151/197 (76.65%), Query Frame = 0


Query: 3   AQTMVLSSGVCASHGVALKREIASLTQRLRPNAQFSRLFFNPLPSSSVSLPAR--GFRTL 62
           AQTM+L+SGV A H +  K  +A          +   LF +   +S V+LP+R   F  L
Sbjct: 2   AQTMLLTSGVTAGHFLRNKSPLA--------QPKVHHLFLS--GNSPVALPSRRQSFVPL 61

Query: 63  AIFKSKAKVPAKKVIVVKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEG 122
           A+FK K K   KK  V KPK KVEDGIFGTSGGIGFTK NELFVGRVAMIGFAASLLGE 
Sbjct: 62  ALFKPKTKAAPKK--VEKPKSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEA 121

Query: 123 ITGKGILAQLNLETGVPIYEAEPLLLFFILFTLLGAIGALGDRGKFIDDPEPATGLERAV 182
           +TGKGILAQLNLETG+PIYEAEPLLLFFILFTLLGAIGALGDRGKF+DD  P TGLE+AV
Sbjct: 122 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDD--PPTGLEKAV 181

Query: 183 IPPGKGLRSALGLKEGG 198
           IPPGK +RSALGLKE G
Sbjct: 182 IPPGKNVRSALGLKEQG 184

The following BLAST results are available for this feature:

BLAST of CmoCh04G024700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02060	4.2e-110	75.99	Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSB...	[more]
Q9FPP4	7.4e-107	74.38	Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum OX=52705 GN...	[more]
P54773	9.7e-107	74.38	Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum OX=4081 GN=...	[more]
Q9SMB4	4.8e-106	75.09	Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSB...	[more]
Q9XF91	1.6e-101	73.65	Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmoCh04G024700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLX6	4.2e-145	99.28	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1JV31	1.0e-143	98.56	photosystem II 22 kDa protein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN...	[more]
A0A0A0K7N4	6.1e-128	87.77	Photosystem II protein OS=Cucumis sativus OX=3659 GN=Csa_7G267900 PE=4 SV=1	[more]
A0A5A7UZ08	1.8e-127	87.77	Photosystem II 22 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CS23	1.8e-127	87.77	photosystem II 22 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of CmoCh04G024700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952982.1	8.7e-145	99.28	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita moschata] >XP_02354...	[more]
XP_022991058.1	2.1e-143	98.56	photosystem II 22 kDa protein, chloroplastic-like [Cucurbita maxima]	[more]
KAG6602094.1	2.4e-142	99.26	Photosystem II 22 kDa protein, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_038885143.1	7.1e-131	89.89	photosystem II 22 kDa protein, chloroplastic [Benincasa hispida]	[more]
XP_004150442.1	1.3e-127	87.77	photosystem II 22 kDa protein, chloroplastic [Cucumis sativus] >KAE8647273.1 hyp...	[more]

BLAST of CmoCh04G024700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44575.1	1.1e-102	73.65	Chlorophyll A-B binding family protein	[more]
AT1G44575.2	1.3e-61	69.04	Chlorophyll A-B binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 271..277
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 3..190
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 3..190
None	No IPR available	PANTHER	PTHR14154:SF74	PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC	coord: 200..263
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 200..263
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 81..255
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 56..138 e-value: 1.6E-5 score: 27.0
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 139..248 e-value: 2.0E-6 score: 29.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 92..222 e-value: 6.3E-8 score: 33.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024700.1	CmoCh04G024700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019904	protein domain specific binding