CmoCh04G024310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G024310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transmembrane protein 50A-like
Location	Cmo_Chr04: 18055288 .. 18060308 (+)
RNA-Seq Expression	CmoCh04G024310
Synteny	CmoCh04G024310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGATTCTAGTTTATTTCTATTGAACTTCTCGGCAGAAAAGGGGTCTGACCGGTGCGATCATTCACCTGTCTCCAATCGCAATCGTAAGAAGAAGGCAAAAGGAAGAATCCACCAATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTTTTTTATTCATTTACCAGTCCACACCATGTATAATTTGCAGTTAGGGTTTTTTATGGTGTTTTGGTATTGGGGTTTTAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGGTGAGTATGTTATGATTTATCTGCTTACCTCTCTCTTTCTATCTCTTGTTGTTTTCAGCCGCTTTTATTGTTTTAAATGCCACCAATCATACCGCCATCCTCTTTGCCTGATCATTCGATTCGATTGAAAGCAATGTCACAGTGTTTTTCTTCAACAAGTCATTGCTCAATGTGATTTAGTGTCTTGCTAGCATTATTCTCCCTGGATGAGTTAGGATTTCATGAACTCGTACATACGAGACTTAACTCTTAATTTACAATTAGAATACCGTAAACTATGTGTGTCTGCAATAGACGTCGAGGGTCAACTCTGGGGCATGGTTGAAGGACTCAATGGGAATGTGAAACTAGTGCCAAACGATTGAATTGTTTGTTAGCCGTCCATTATAAGCTTAGACGAGGTGAAAAACCAAATGGGCAAGTTGGCAACACAATCTATACATTGTGTCAATGGCTGTATTTAGTGTAGGTGATTTGGAGATGCAATCTCCACACAGAGACTTATACACATTCTTTTGGCTTAAGCAGTATTTGTACTTTATATTTATTATTTGGGCATCCTTTTAATCAATTCTGTAGAACCCCTACGGAAGAAAAGCTTTTTCTCTAAGAGAGGAAGACTTATTCTTATCCAGTCTATCCTTAGTGAAATTCGTGTGTATTTTCCATCCTTGTGTTTGGATCCGTGTGAAAGTTTTGTAGTTCCGTAAAGAGACTTATGTGAAGACCTTTTATGGGAAGGGGTGGAGGAAGGGAAGGGTGCACATTTGGTAAATTGGGAGGTGGTGTGGGGAATCTTAGGGTGTGTAATAGGGCTTTGTTGGACAAGTGGTTGCAGTATTTTCCTTGAGAATTTGATGCTCTAGTTACAGTAATTTTATTAGTCTGAGGGAGAGGAGATCTTTAGTTATGGAGCTTCGTCCTTTTGGAGGGGTCCTCTTGTATCACGTTTTTTCGTTGTTGGGCGAGCCCCTTTATTTTCAAGTTCTCCCATCTTTTCCTTACTCTGGAAGATCAAAGTCGTGATGAAGGTGATCATCTCTTTTGGTTTTGTCAGTTTACTTGATTGTTGTGGAGTGGCTTTTGTGAGACGTTTTCCTTACGTTTGGCTTGGTCAGGAGTTGTAACTCCATGTTGGAGGGGTTTTACCATTCATATATATATATATATATATATATATATATTTCATCCTCCTTTTCAAAGAAAAAATAGAACCTTTAGAAGAGTGGAGAGATCTTTGGGCGAAGGTTCTTTTATTTTTTTTATTTATTTTTGATAAGATACCGTTTCATTAATGTTTGAGATTTACAAAAAAAAAAAAAAAAAGATGTGTTATCCATGATACTTACAAAAGACTTTCCCAATTAACAATCAGGTAAGGTTGTAGGAAGACAACTTACACTATTTCTTGGTAAACAACATTGTTGAAGAGCCTAGTAGGAGTTTCCAATAAGATTTATTGAATTCACTCTTTCCAAATATTCCAAAAGAAAGTCATGATGAGGTTGGGTCTATACTAGAGTTTTTGCATTCTTGAAAGGGGGTACGTTAAGACCATGTCCAGTTAATCTTTGACCTCCTTAGGAACAGTGAGGTGTCATCCGAAAATGGTGAGAATATTTATCCATAAGTTATAGGCATAAGTACACTACATAAATAGGTGGTTTTTGGATTCATTCTCTCTTGCATAAAGGGCATTAATTGGAAAATAGAGTCCTGCAGGGCATTCATTTTTGTAGGTTTTCATTTGTGCTAATGGCTTTGTGCATAACTTCTCATGGGAAAAACTCCACCTTTTTTTATGATTTCCTTTCCATATTGTCTTGGGCTATTGTGAGGTTTATGGCTTTTATTTTTTCCCCCATATCTATCATTAAGGATTTTGTGGAGAAAACCGATCCCTAGGAAGGCATTTCAATGAGCCTACTTCTTGGGATAACACTATTGGGCAAGGTCAAGGCTTAACTTGGCCCATTATGTAGCTTTGCTATCCTTGAGGTTCGTATTGAGCTGTGACTCCCAAAATTTGTTGTCATATTTCCATATTTCTTTGATTGTGGTCGTCTTGCAATGTGAGTGCCTATATAAAAGAGGATACTGCAATGCTAGCATGGTGTTGCAATCCAAGATGTGTTTTCTCCATCACCCACCCTATGGCAAATGCGGTTAGTGATGAGGTTTTGGTGCTCTTTTATAAACTTTCGTGGCCCATTGGCAGAAGATGGGAATAATCGGTTTGTACATGATGTTGGAGCGTGTTTAGCTTTTATAAGATTCCTCCACAAGGCAGTGCCTTCAAGTGAGGTATGGTCACTTGTTAGATTTCACCTCTCTTTGCGTCTCTGTTTGTAAAGATTTTTGTCATTACCCCATAGGTCTTATTATGCATGACTAGAGCTGGTTGGGCTCTTCTTGGGTTTTTCGTGTTTTCTTTTTTGTTGGTATTCCTCGTGTATTCTTCCATTTTTTTTTTCCACAGTGAAAACTCACATTTTACCCCATAAAAATCCCCTTTTCAACCTTCTCCCCAATTGGGTGGGTTGTGAAAAGGAGGAACTAAGGGGCAAGAGTGAGGTTGGTTAGGTTTGAGAACATTCTTAGTGAGAGAGAGCTGAAAGAAGAGCATGTGTATGCAGAAAATATCATAAACGAAGACATGGAACGTAACTTCTTGATAGAATGGTCCAAGGATAGTAGACATAGGTGGAGATCCAACAACCATCGAAAAATGATGTATTAGAGGTTGTGATGCTCTGCGAAGGTATAAGAATAATATTCAGAATGCTATTATATAGAAATAAAATTTTCATGCATCATCCTTCCCAAACTTTAAAAGTCATGACCCCAAGAATTTTCATCAATCATAGGTCCACCAATTTAGGGAGGCAAACCAATAACCCAAGTTCTAGCAAAAGAAAAGACCAGCTCTTAAAAGAAAAGGAGCAATAGAGGAAAATGGTCTAGAGATTCGTCGTCCTTCTTACAAAGACAACAAGCCAAGGGGGACAAAGCCCAGAGTGGGAACTTCTGTAATTTGACGGCAGGATTAACTATTAAGATTGAGACTTCTATAGGTGAGACACAAAAGAAATGTTCACTTTCTTAGGGACTTGAAATTCCAAATATAAACCACGAAAGGGGCCTTGAACTTAGCAGGAGGTTTGGTAAGGTAAGATGCATGGCGAACCATTTCCTCACACCTTCAGCAGTTGTGATACTTGTTTGAGAATAAAATTACTAGTGTGCGAGCTGAAATCTAGCTTGTAGGCAAGTCATTAACACCCACTTAAAAATGGATTTCATGAAGTGGTAATTGTAGAATTCAAATCTGCATAGAAGGCCTAATGCATAAAGAAATCTTTTCATACGCCCTAAGCTTCCATACTGGTCTACAATATTGGTTCATACTAGGTAGGACATGATGAATTGATATGTTAGTTATTTGTTGAGATATCACGGAAATAAGCCTCTGTAAAATTGAAGTTTCAGAGACCTATAAGCAAAGGAAAATTAGAAGACTTGTGTGATAGCATCGAGAATTTAATGTCTGTTTTGATGTGGTGCTAGTGTTTTTCTGTAATTAACAGTACTGACGTTTCCCTTAACTGCAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAGTTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGGTAAATGGCCTCTCTCCTTTTTATTATCTTAATTCTGATTTTTCCCATCTGTCTTTTAGTTGGATTTGTGCCAGCAAACATGTAGCCACTTCTTATTGTCTACTCCACCTAGTTGTGGAATCATTCAGCAAGGCAACTTTGTTAAAGAAGAGTTGTTGGGGTTCTTTCATTATGTTGTTTCTCTTGATTTCTGAGCAGGTCTGAATCTACTACATAAGATGTTTAAATCATGCCATAAGCAAAGTTGGTTGAACGAGAATATTTTCTCTTTAGCAGTCTGATGCTGTATCAATGTATGCCCCTGTTCTTTGGTCTTCGTTGCATTAGATAGCTTTGTGGAAAAACCAAAATCATTAAGGGGTTTCAATTTTCATCTCTCGCACAAGTGTCATGTAATACAAATGCTACGTAGCTAGACCCTGGTCAGCACTGTCTATGTTCTGTTTTCCTGAAATACTGTTTGTTGCAGTGGGTTGATTTACTGGACTTCTCACACGGAATAAGTCGGAAAGAATTATGCACTTAGACCTCAGAGGCTGAAGAGTTACCAACTGCATAGCGCGTTGCATCGTCAAGTCGATTGTGTGTCATTTGACTTTTCCAACTATGGAACTGAACAGTAAGAGCTTTCTACTTCTTGTAAATGTCATGTTAATCTTAATCTGAAACCATGTCTGTAAATCTTTATGGATCCAATATAAGTGAGCAAGTGAGCCAGCATTCAATGTTTCAGCCATTTCAGTTTGTCGCAGTGTTCATATTATATACTAACAAAGCATAAAATGATGAAGGGTGGTCAGTTTTGTTTTGGTTTTTAGTTTCTTTCCTTCGAAAAATTG

mRNA sequence

TGTGATTCTAGTTTATTTCTATTGAACTTCTCGGCAGAAAAGGGGTCTGACCGGTGCGATCATTCACCTGTCTCCAATCGCAATCGTAAGAAGAAGGCAAAAGGAAGAATCCACCAATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAGTTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGGTCTGAATCTACTACATAAGATGTTTAAATCATGCCATAAGCAAAGTTGGTTGAACGAGAATATTTTCTCTTTAGCAGTCTGATGCTGTATCAATTGGGTTGATTTACTGGACTTCTCACACGGAATAAGTCGGAAAGAATTATGCACTTAGACCTCAGAGGCTGAAGAGTTACCAACTGCATAGCGCGTTGCATCGTCAAGTCGATTGTGTGTCATTTGACTTTTCCAACTATGGAACTGAACAGTAAGAGCTTTCTACTTCTTGTAAATGTCATGTTAATCTTAATCTGAAACCATGTCTGTAAATCTTTATGGATCCAATATAAGTGAGCAAGTGAGCCAGCATTCAATGTTTCAGCCATTTCAGTTTGTCGCAGTGTTCATATTATATACTAACAAAGCATAAAATGATGAAGGGTGGTCAGTTTTGTTTTGGTTTTTAGTTTCTTTCCTTCGAAAAATTG

Coding sequence (CDS)

ATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGGACGGGAGTTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGGTCTGAATCTACTACATAA

Protein sequence

MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCVFVLVRSESTT

Homology

[Close]

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot
Match: Q9CXL1 (Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-07
Identity = 39/127 (30.71%), Postives = 58/127 (45.67%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V
Sbjct: 14  MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCGVIATIAFLMINAV 73

Query: 61  RKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAG 120
               +    Y E   G+   ++WLF  ++++F SL AS+ +L    V K     + G+A 
Sbjct: 74  SNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKDVVYPGIAV 133

Query: 121 VLQCVFV 123
             Q  F+
Sbjct: 134 FFQNAFI 140

[Close]

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot
Match: O95807 (Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.0e-07
Identity = 36/113 (31.86%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 15  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE-- 74
           AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y E  
Sbjct: 28  AGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGC 87

Query: 75  -GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCVFV 123
            G+   ++WLF  ++++F SL AS+ +L    V K     + G+A   Q  F+
Sbjct: 88  LGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFI 140

[Close]

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot
Match: Q9D1X9 (Transmembrane protein 50B OS=Mus musculus OX=10090 GN=Tmem50b PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 35/123 (28.46%), Postives = 56/123 (45.53%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNTVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAG 119
               +    YE    G    ++WLF  +++ F SL AS+ +L   + V   +  + G+A 
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNIDVYPGLAV 135

[Close]

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot
Match: Q3SZL9 (Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 35/120 (29.17%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLI-----QDSVVKTGLSAW 111
               +    YE    G    ++WLF  +++ F SL AS+ +L      Q++ V  GL+ +
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYPGLAVF 135

[Close]

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot
Match: P56557 (Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 6.6e-05
Identity = 35/120 (29.17%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCV 60
           +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V
Sbjct: 16  IDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAV 75

Query: 61  RKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLI-----QDSVVKTGLSAW 111
               +    YE    G    ++WLF  +++ F SL AS+ +L      Q++ V  GL+ +
Sbjct: 76  SNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYPGLAVF 135

[Close]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL
Match: A0A6J1JKY2 (transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL
Match: A0A6J1HF20 (transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111463579 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.5e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL
Match: A0A1S3CCJ8 (transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.6e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL
Match: A0A6J1JRP9 (transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 7.9e-62
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL
Match: A0A6J1CJN8 (transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 119/124 (95.97%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVPVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDS+VKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSIVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. NCBI nr
Match: XP_022963347.1 (transmembrane protein 50A-like [Cucurbita moschata] >XP_022991142.1 transmembrane protein 50A-like [Cucurbita maxima] >XP_023517110.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo] >KAG6602062.1 Transmembrane protein 50A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 252.7 bits (644), Expect = 1.7e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. NCBI nr
Match: KAG7032755.1 (Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 252.3 bits (643), Expect = 2.3e-63
Identity = 123/124 (99.19%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTG+AGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGIAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. NCBI nr
Match: XP_038874577.1 (transmembrane protein 50A [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 5.6e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFIHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. NCBI nr
Match: XP_008460472.1 (PREDICTED: transmembrane protein 50A [Cucumis melo])

HSP 1 Score: 247.3 bits (630), Expect = 7.3e-62
Identity = 121/124 (97.58%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRK
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. NCBI nr
Match: XP_022993057.1 (transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane protein 50A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+
Sbjct: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFVHYLPGIFASFAALMFNCVRR 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTG S WTGVAGVLQCV
Sbjct: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGPSVWTGVAGVLQCV 120

Query: 121 FVLV 125
           FVLV
Sbjct: 121 FVLV 124

[Close]

BLAST of CmoCh04G024310 vs. TAIR 10
Match: AT1G36980.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 226.9 bits (577), Expect = 9.6e-60
Identity = 107/124 (86.29%), Postives = 114/124 (91.94%), Query Frame = 0


Query: 1   MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRK 60
           MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V F+HYLPGIFAS  ALMFNCVRK
Sbjct: 1   MDLAELWAIFGPGFSGAVFGTGWWFWVDAVVCSSIQVPFVHYLPGIFASLGALMFNCVRK 60

Query: 61  EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAWTGVAGVLQCV 120
           EDIDYSPY+EGEWRLKLWLF AYVV+FVSLAASVGLLIQDSVVKTG S WTGVAGV QCV
Sbjct: 61  EDIDYSPYDEGEWRLKLWLFIAYVVAFVSLAASVGLLIQDSVVKTGPSTWTGVAGVFQCV 120

Query: 121 FVLV 125
           FVL+
Sbjct: 121 FVLI 124

The following BLAST results are available for this feature:

BLAST of CmoCh04G024310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CXL1	4.1e-07	30.71	Transmembrane protein 50A OS=Mus musculus OX=10090 GN=Tmem50a PE=1 SV=1	[more]
O95807	7.0e-07	31.86	Transmembrane protein 50A OS=Homo sapiens OX=9606 GN=TMEM50A PE=1 SV=1	[more]
Q9D1X9	5.0e-05	28.46	Transmembrane protein 50B OS=Mus musculus OX=10090 GN=Tmem50b PE=1 SV=1	[more]
Q3SZL9	6.6e-05	29.17	Transmembrane protein 50B OS=Bos taurus OX=9913 GN=TMEM50B PE=2 SV=1	[more]
P56557	6.6e-05	29.17	Transmembrane protein 50B OS=Homo sapiens OX=9606 GN=TMEM50B PE=1 SV=2	[more]

BLAST of CmoCh04G024310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JKY2	8.5e-64	100.00	transmembrane protein 50A-like OS=Cucurbita maxima OX=3661 GN=LOC111487827 PE=3 ...	[more]
A0A6J1HF20	8.5e-64	100.00	transmembrane protein 50A-like OS=Cucurbita moschata OX=3662 GN=LOC111463579 PE=...	[more]
A0A1S3CCJ8	3.6e-62	97.58	transmembrane protein 50A OS=Cucumis melo OX=3656 GN=LOC103499276 PE=3 SV=1	[more]
A0A6J1JRP9	7.9e-62	96.77	transmembrane protein 50A OS=Cucurbita maxima OX=3661 GN=LOC111489187 PE=3 SV=1	[more]
A0A6J1CJN8	1.8e-61	95.97	transmembrane protein 50A OS=Momordica charantia OX=3673 GN=LOC111012019 PE=3 SV...	[more]

BLAST of CmoCh04G024310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963347.1	1.7e-63	100.00	transmembrane protein 50A-like [Cucurbita moschata] >XP_022991142.1 transmembran...	[more]
KAG7032755.1	2.3e-63	99.19	Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038874577.1	5.6e-62	97.58	transmembrane protein 50A [Benincasa hispida]	[more]
XP_008460472.1	7.3e-62	97.58	PREDICTED: transmembrane protein 50A [Cucumis melo]	[more]
XP_022993057.1	1.6e-61	96.77	transmembrane protein 50A [Cucurbita maxima] >XP_023549618.1 transmembrane prote...	[more]

BLAST of CmoCh04G024310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36980.1	9.6e-60	86.29	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007919	Uncharacterised protein family UPF0220	PFAM	PF05255	UPF0220	coord: 13..124 e-value: 3.5E-19 score: 69.0
IPR007919	Uncharacterised protein family UPF0220	PANTHER	PTHR13180	SMALL MEMBRANE PROTEIN-RELATED	coord: 3..125
None	No IPR available	PANTHER	PTHR13180:SF3	OS02G0566900 PROTEIN	coord: 3..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024310.1	CmoCh04G024310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0016021	integral component of membrane