CmoCh04G024030 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G024030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Plastid movement impaired 2
Location	Cmo_Chr04: 17900637 .. 17901347 (-)
RNA-Seq Expression	CmoCh04G024030
Synteny	CmoCh04G024030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

mRNA sequence

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Coding sequence (CDS)

ATGGGGAACAGTATTGGGGGAAGACGGAGAGTAAAGGTAATGAAAGTGGACGGAGAGATTCTGAAATTGAAGACGCCGATTCGAGTTTCAGAGGTTTTGAAAGATTATCCGGATCATGTTTTGATGGAATCGGAGGCTGTTAAGCATTACGGAGTGAAGGCCAAGCCATTAGAGCCGCAACAGGATTTGAACAAGAAGAAGATTTATTTTCTTCTACAGTTACCGAAGATCTCCAATCCGGAACCTCCGGAGCGGATTCCGAGGCGAGTTCGTTCTTCTGGCGTCAATATGTCCGCCAAGGATCGTCTCGACCTTCTCATGCTTTCGCGGAGGACGATGTCGGAGGTCGCTATTACTAGACCGTCTCCGGTACTGGCTGCTGCTTCCTCTGCTGAGCCGCGGTTCCATAGCGGCCCGATGCAGGTTAAAATGAAGATTCCGAGATCGCAGGTCGCTAAATTGATGGAGGAGAGTCGGAATGAAGGAGAAATCGCGGAGAAGATTATAAATCTTTATTTGAAGAACGAGGTCAATAGCGGCGGCGGCGGCGGCGGTGGCCATGGCGATGCCGTTGCCGGTTCCGGTGGCTTCGATGCCGGCCGTCATCCGGAGCCGTGGAAACCCAGCCTTGTTAGTAGCGTTAGGGAAAATTCAAAGGTTCATCGCGAGGTATGTTCGTCGTTCAAATTTTTCGCTCTGACAGTCCATTAA

Protein sequence

MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQQDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSFKFFALTVH

Homology

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BLAST of CmoCh04G024030 vs. ExPASy Swiss-Prot
Match: Q6NLC8 (Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-39
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 120
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 121 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 180
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 181 LYLKNEVNSGGGGGGGHGDAVAGSGGFDA 200
           +Y++     GGG GG  G    GSG   A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

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BLAST of CmoCh04G024030 vs. ExPASy TrEMBL
Match: A0A6J1GX06 (uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC111458324 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 5.4e-117
Identity = 225/228 (98.68%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG
Sbjct: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
           GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 228

[Close]

BLAST of CmoCh04G024030 vs. ExPASy TrEMBL
Match: A0A6J1JKD4 (uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC111487701 PE=4 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 6.1e-113
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKI+NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLA ASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS 
Sbjct: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS- 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
            GGGGGHGDAVAGSGG DAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 -GGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 226

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BLAST of CmoCh04G024030 vs. ExPASy TrEMBL
Match: A0A0A0KRN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418770 PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.6e-92
Identity = 190/239 (79.50%), Postives = 205/239 (85.77%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGR+RVKVMKVDGEILKLK PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRKRVKVMKVDGEILKLKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLN+KKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNRKKIYFLLQLPKIAADNRPPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
           TRPS   A  SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKII +YLKNEVN
Sbjct: 121 TRPSTTSATDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIIKMYLKNEVN 180

Query: 181 SGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 235
           +GGG           +G  +AG+HPE WKPSLVSSVRENSKVHREV     +F+F   T
Sbjct: 181 TGGG----------SAGDVNAGQHPEHWKPSLVSSVRENSKVHREVRFFLPNFRFIHFT 229

[Close]

BLAST of CmoCh04G024030 vs. ExPASy TrEMBL
Match: A0A5A7V9K2 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001150 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.5e-90
Identity = 189/240 (78.75%), Postives = 204/240 (85.00%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGN+IGGR+RVKVMKVDGEILK K PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNTIGGRKRVKVMKVDGEILKFKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLNKKKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNKKKIYFLLQLPKIAADNRAPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAA-SSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEV 180
           TRPS   A   SSA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKIIN+YLKNEV
Sbjct: 121 TRPSSTAATVDSSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIINMYLKNEV 180

Query: 181 NSGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 235
           N+GGG           +G  +AG+  E WKPSLVSSVRENSKVHREV     +F+F  LT
Sbjct: 181 NTGGG----------SAGDVNAGQQAEHWKPSLVSSVRENSKVHREVGFFLPNFRFIHLT 230

[Close]

BLAST of CmoCh04G024030 vs. ExPASy TrEMBL
Match: A0A5D3DSE2 (DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002680 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.6e-89
Identity = 188/240 (78.33%), Postives = 202/240 (84.17%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGN+IGGR+RVKVMKVDGEILK K PIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNTIGGRKRVKVMKVDGEILKFKLPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKIS--NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
           QDLNKKKIYFLLQLPKI+  N  PP+RIPRRVRSSGV+MSAKDRLDLLMLSRRTMSE+AI
Sbjct: 61  QDLNKKKIYFLLQLPKIAADNRAPPDRIPRRVRSSGVHMSAKDRLDLLMLSRRTMSEIAI 120

Query: 121 TRPSPVLAAAS-SAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEV 180
           TRPS   A    SA+PRFHSGPMQVKMKIPRSQVAKLMEES +EGEIAEKIIN YLKNEV
Sbjct: 121 TRPSSTAATVDFSAQPRFHSGPMQVKMKIPRSQVAKLMEESASEGEIAEKIINTYLKNEV 180

Query: 181 NSGGGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREV---CSSFKFFALT 235
           N+GGG           +G  +AG+  E WKPSLVSSVRENSKVHREV     +F+F  LT
Sbjct: 181 NTGGG----------SAGDVNAGQQAEHWKPSLVSSVRENSKVHREVGFFLPNFRFIHLT 230

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: KAG7032730.1 (hypothetical protein SDJN02_06780, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 455.7 bits (1171), Expect = 2.5e-124
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG
Sbjct: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSFKFFALTVH 237
           GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSFKFFALTVH
Sbjct: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSFKFFALTVH 236

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: XP_022956667.1 (uncharacterized protein At1g66480-like [Cucurbita moschata])

HSP 1 Score: 430.3 bits (1105), Expect = 1.1e-116
Identity = 225/228 (98.68%), Postives = 225/228 (98.68%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG
Sbjct: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
           GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 228

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: XP_023527466.1 (uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 426.4 bits (1095), Expect = 1.6e-115
Identity = 223/228 (97.81%), Postives = 224/228 (98.25%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSMGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG
Sbjct: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
           GGGGGGHGDAVAGSGG DAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 GGGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 228

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: XP_022990967.1 (uncharacterized protein At1g66480-like [Cucurbita maxima])

HSP 1 Score: 416.8 bits (1070), Expect = 1.3e-112
Identity = 220/228 (96.49%), Postives = 221/228 (96.93%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKI+NPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKITNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLA ASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS 
Sbjct: 121 PSPVLATASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS- 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
            GGGGGHGDAVAGSGG DAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 -GGGGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 226

[Close]

BLAST of CmoCh04G024030 vs. NCBI nr
Match: KAG6602036.1 (hypothetical protein SDJN03_07269, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 415.6 bits (1067), Expect = 2.8e-112
Identity = 220/228 (96.49%), Postives = 220/228 (96.49%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ
Sbjct: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR
Sbjct: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNSG 180
           PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS 
Sbjct: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVNS- 180

Query: 181 GGGGGGHGDAVAGSGGFDAGRHPEPWKPSLVSSVRENSKVHREVCSSF 229
              GGGHGDAVAGSGG DAGRHPEPWKPSLVSSVRENSKVHRE   SF
Sbjct: 181 ---GGGHGDAVAGSGGVDAGRHPEPWKPSLVSSVRENSKVHREKRVSF 224

[Close]

BLAST of CmoCh04G024030 vs. TAIR 10
Match: AT1G66480.1 (plastid movement impaired 2 )

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-40
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 0


Query: 1   MGNSIG-GRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGNSI   R+R KVMK+DGE  ++KTP+   EV  DYP +VL++S+AVKH+GV++KPLEP
Sbjct: 1   MGNSITVKRKRAKVMKIDGETFRIKTPVTAREVTADYPGYVLLDSQAVKHFGVRSKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPE--------RIPRRVRSSGVNMSAKDRLDLLMLSRR 120
            Q L  KK YFL++LPK+    PPE        ++P R   SG+++ AK+RLD+LMLSRR
Sbjct: 61  NQTLKPKKTYFLVELPKL----PPETTAVDTENKLPYRRVMSGIHVGAKERLDMLMLSRR 120

Query: 121 TMSEVAITRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGE-IAEKIIN 180
           T+S+V I R            P    G   V++++PRSQ+ KLMEE+ N+   IAEKI+ 
Sbjct: 121 TVSDVTIGRSD----GGDGFGPELGPGHTSVRLRLPRSQITKLMEENNNDASAIAEKILG 180

Query: 181 LYLKNEVNSGGGGGGGHGDAVAGSGGFDA 200
           +Y++     GGG GG  G    GSG   A
Sbjct: 181 IYMERSGELGGGRGGVDGRRELGSGEIKA 201

[Close]

BLAST of CmoCh04G024030 vs. TAIR 10
Match: AT2G01340.1 (Encodes a protein whose expression is responsive to nematode infection. )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 78/176 (44.32%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+GG++  KVMK+DGE  KLKTP+   EVLKD+P HVL++SE+VKHYG +AKPLE +
Sbjct: 1   MGNSLGGKKTTKVMKIDGETFKLKTPVTAEEVLKDFPGHVLLDSESVKHYGARAKPLEAK 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q L  K++YF+++  K       E  PRRVR SG+++SAK+RL+ LML+RR+ S+++I +
Sbjct: 61  QRLEAKRLYFVVEPVK-------ECPPRRVR-SGIHVSAKERLESLMLARRSSSDLSILK 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNE 177
           P                   +VK++IP++++ KL++E   E E  +KI  L++  +
Sbjct: 121 P-----PGGWTTEEEEGAVRRVKVRIPKAELEKLVKEGATEAEATQKIAALFMAKQ 163

[Close]

BLAST of CmoCh04G024030 vs. TAIR 10
Match: AT5G37840.1 (BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-33
Identity = 88/193 (45.60%), Postives = 125/193 (64.77%), Query Frame = 0


Query: 1   MGNSIGGRR-RVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEP 60
           MGN+I  RR +VKVMK+DG+I +LKTP+  S+  K+YP  VL++SE VK  GV+AKPLEP
Sbjct: 1   MGNTIMVRRNKVKVMKIDGDIFRLKTPVTASDATKEYPGFVLLDSETVKRLGVRAKPLEP 60

Query: 61  QQDLNKKKIYFLLQLPKISNPEPPERIP-RRVRSSGVNMSAKDRLDLLMLSRRTMSEVAI 120
            Q L     YFL+ LP +   +   ++P RRV S  +++ AK+RL++LMLSRRT+S+V  
Sbjct: 61  NQILKPNHTYFLVDLPPV---DKRNKLPYRRVMSGNIHVGAKERLEMLMLSRRTVSDVGA 120

Query: 121 TRPSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYLKNEVN 180
            R   V        P    G  +V++++PRSQ+ KLMEES +  E+A KII+ Y++   +
Sbjct: 121 ARSDVV-----GDGPEL--GHTRVRLRLPRSQITKLMEESHDASEVAAKIISAYME---S 180

Query: 181 SGGGGGGGHGDAV 192
           SGG  GG   D +
Sbjct: 181 SGGIQGGRDNDGL 180

[Close]

BLAST of CmoCh04G024030 vs. TAIR 10
Match: AT1G71015.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01340.1); Has 85 Blast hits to 85 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 136.7 bits (343), Expect = 2.4e-32
Identity = 77/173 (44.51%), Postives = 115/173 (66.47%), Query Frame = 0


Query: 1   MGNSIGGRRRVKVMKVDGEILKLKTPIRVSEVLKDYPDHVLMESEAVKHYGVKAKPLEPQ 60
           MGNS+G ++   +M ++GE  KLKTP+    V+KD+P HVL+ESEAVK  G++AKPLEP 
Sbjct: 1   MGNSLGTKKTATIMNINGESFKLKTPVEAGTVVKDFPGHVLLESEAVKRLGIRAKPLEPH 60

Query: 61  QDLNKKKIYFLLQLPKISNPEPPERIPRRVRSSGVNMSAKDRLDLLMLSRRTMSEVAITR 120
           Q+L  K+IYF+++LP+       ER PRRVR SG+ MSAK+RL+ L LSRR+ S++++ +
Sbjct: 61  QNLESKRIYFMVELPRTWK----ERTPRRVR-SGIQMSAKERLENLKLSRRSSSDLSVMK 120

Query: 121 PSPVLAAASSAEPRFHSGPMQVKMKIPRSQVAKLMEESRNEGEIAEKIINLYL 174
               +    + E R  S    VK+K+P+ ++ KL +ES +  + + KI  L L
Sbjct: 121 KKTEV----NDEEREVS---SVKLKLPKWKIEKLRKESESGSDFSNKITQLCL 161

The following BLAST results are available for this feature:

BLAST of CmoCh04G024030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLC8	3.3e-39	46.89	Uncharacterized protein At1g66480 OS=Arabidopsis thaliana OX=3702 GN=At1g66480 P...	[more]

BLAST of CmoCh04G024030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GX06	5.4e-117	98.68	uncharacterized protein At1g66480-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1JKD4	6.1e-113	96.49	uncharacterized protein At1g66480-like OS=Cucurbita maxima OX=3661 GN=LOC1114877...	[more]
A0A0A0KRN5	1.6e-92	79.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418770 PE=4 SV=1	[more]
A0A5A7V9K2	2.5e-90	78.75	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DSE2	1.6e-89	78.33	DUF4228 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CmoCh04G024030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032730.1	2.5e-124	100.00	hypothetical protein SDJN02_06780, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956667.1	1.1e-116	98.68	uncharacterized protein At1g66480-like [Cucurbita moschata]	[more]
XP_023527466.1	1.6e-115	97.81	uncharacterized protein At1g66480-like [Cucurbita pepo subsp. pepo]	[more]
XP_022990967.1	1.3e-112	96.49	uncharacterized protein At1g66480-like [Cucurbita maxima]	[more]
KAG6602036.1	2.8e-112	96.49	hypothetical protein SDJN03_07269, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmoCh04G024030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66480.1	2.4e-40	46.89	plastid movement impaired 2	[more]
AT2G01340.1	1.1e-34	44.32	Encodes a protein whose expression is responsive to nematode infection.	[more]
AT5G37840.1	1.3e-33	45.60	BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT...	[more]
AT1G71015.1	2.4e-32	44.51	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 1..211 e-value: 4.3E-22 score: 79.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..202
None	No IPR available	PANTHER	PTHR33148:SF6	PLASTID MOVEMENT IMPAIRED PROTEIN	coord: 1..178
None	No IPR available	PANTHER	PTHR33148	PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED	coord: 1..178

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G024030.1	CmoCh04G024030.1	mRNA