CmoCh04G021110 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G021110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ribonuclease H-like domain, reverse transcriptase, RNA-dependent DNA polymerase
Location	Cmo_Chr04: 13579804 .. 13580483 (-)
RNA-Seq Expression	CmoCh04G021110
Synteny	CmoCh04G021110

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATGTAGGTGTGGAACGTGTCAAGGAAGCAAAGGTGTAGACCTTGAAGAGTGAGTTTGAGGCTATCCGCATGAAGGACTGTGAGTCAATAGACGACTTTTGCAAAAAGAGCTTGAAGTCATTGAGAAGAACTAGACATGGACATTAACTAACTTACCGTCAGGATAGAAGCCCATCTATTTGAAGTGGGTGTTTAAGTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

mRNA sequence

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

Coding sequence (CDS)

ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG

Protein sequence

MRVNLQAQGMWDVIEYGDVEERKDKMALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL

Homology

[Close]

BLAST of CmoCh04G021110 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.4e-25
Identity = 57/142 (40.14%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 20  EERKDKMALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEK 79
           E+ +   A+    +++ K+    L E    K   +      LKK+ +  ++++KARL+ K
Sbjct: 822 EKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVK 881

Query: 80  GYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQP 139
           G+ Q++G++F+E+F+PV K+ ++R IL+LAA    EV  LD+KT FL+GDL+EE+Y+ QP
Sbjct: 882 GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

Query: 140 EGFVIKAEEHKVYKLSKTLYGL 162
           EGF +  ++H V KL+K+LYGL
Sbjct: 942 EGFEVAGKKHMVCKLNKSLYGL 963

[Close]

BLAST of CmoCh04G021110 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 96.3 bits (238), Expect = 3.4e-19
Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 43   LTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTV 102
            +T++   K   ++     +K N  GN I++KARL+ +G+ Q+  +++EE FAPVA++ + 
Sbjct: 925  ITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSF 984

Query: 103  RLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
            R IL+L  Q+  +V  +D+KT FLNG L+EE+Y+  P+G  I      V KL+K +YGL
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGL 1041

[Close]

BLAST of CmoCh04G021110 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-19
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 0


Query: 62   KKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDI 121
            K NS+G++ ++KARL+ KGY Q+ G+++ E F+PV K  ++R++L +A    W +  LD+
Sbjct: 1007 KYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1066

Query: 122  KTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
               FL G L ++VY++QP GF+ K   + V KL K LYGL
Sbjct: 1067 NNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGL 1106

[Close]

BLAST of CmoCh04G021110 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 43/100 (43.00%), Postives = 66/100 (66.00%), Query Frame = 0


Query: 62   KKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDI 121
            K NS+G++ ++KARL+ KGY Q+ G+++ E F+PV K  ++R++L +A    W +  LD+
Sbjct: 990  KFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDV 1049

Query: 122  KTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
               FL G L +EVY++QP GFV K     V +L K +YGL
Sbjct: 1050 NNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGL 1089

[Close]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL
Match: A0A251U1A0 (Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g0272931 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 5.1e-34
Identity = 78/141 (55.32%), Postives = 100/141 (70.92%), Query Frame = 0


Query: 21   ERKDKMALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKG 80
            E   + A+ A  +++ K+    LT+  S + A        LKK++ GNV KHKARL+ KG
Sbjct: 918  EESWRKAMQAELESIEKNRTWTLTQLPSNQKAIGLKWVFKLKKDAHGNVTKHKARLVAKG 977

Query: 81   YVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPE 140
            YVQQ+GV+FE+ FAPVA++ TVRLI+A+AA   W V HLD+K+ FLNGDLQEEVYV QPE
Sbjct: 978  YVQQKGVDFEDAFAPVARMETVRLIIAIAASKGWPVHHLDVKSAFLNGDLQEEVYVVQPE 1037

Query: 141  GFVIKAEEHKVYKLSKTLYGL 162
            GF +K +EH VYKL K LYGL
Sbjct: 1038 GFKVKGKEHLVYKLHKALYGL 1058

[Close]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL
Match: Q10F84 (Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 0


Query: 61   LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
            LKKN+ G VIKHKARL+ KGYVQ+QGV+F+EVFAPVA+L TVR IL +A   +W+V HLD
Sbjct: 919  LKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAILPVAVDRRWQVHHLD 978

Query: 121  IKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYKLSKTLYGL 162
            +K+ FLNGDL+EEVYV+QPEGFV K +EH VYKLSK LYGL
Sbjct: 979  VKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGL 1019

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: KAB8107251.1 (hypothetical protein EE612_041900 [Oryza sativa] >BAF22809.1 Os08g0125300 [Oryza sativa Japonica Group] >BAG92574.1 unnamed protein product [Oryza sativa Japonica Group] >BAT03649.1 Os08g0125300 [Oryza sativa Japonica Group])

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-34
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: EEC84282.1 (hypothetical protein OsI_30754 [Oryza sativa Indica Group])

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-34
Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 0


Query: 27   ALAAIYQTVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQG 86
            A+A   Q + K+    LT   +            LKKN+ G VIKHKARL+ KGYVQ+QG
Sbjct: 930  AMAQELQAIEKNSTWALTALPAGHKPIGLKWVYKLKKNTAGEVIKHKARLVAKGYVQRQG 989

Query: 87   VNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKA 146
            V+FEEVFAPVA+L TVR+ILA+AA  +WEV HLD+K+ FLNGDL+EEVYVAQPEGFV + 
Sbjct: 990  VDFEEVFAPVARLDTVRVILAIAADRRWEVHHLDVKSAFLNGDLEEEVYVAQPEGFVKRG 1049

Query: 147  EEHKVYKLSKTLYGL 162
            EEH V +LSK LYGL
Sbjct: 1050 EEHLVLRLSKALYGL 1064

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: KAG7538346.1 (Ribonuclease H-like superfamily [Arabidopsis suecica])

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-33
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 34   TVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVF 93
            +++K+    L EK              +KKN++G + K+KARL+ KGYVQ+ G++FEEVF
Sbjct: 894  SINKNKTWFLVEKPREAKVIGLKWIFKIKKNADGTINKYKARLVAKGYVQESGIDFEEVF 953

Query: 94   APVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYK 153
            APVA+L T+RL++ALAA H WE+ HLD+KT FL+G+L+E+VYV QPEGF +K EEHKVYK
Sbjct: 954  APVARLETIRLLIALAASHGWEIHHLDVKTAFLHGELKEDVYVDQPEGFEVKGEEHKVYK 1013

Query: 154  LSKTLYGL 162
            LSK LYGL
Sbjct: 1014 LSKALYGL 1021

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: KAG7559162.1 (Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-33
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 34   TVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVF 93
            +++K+    L EK              +KKN++G + K+KARL+ KGYVQ+ G++FEEVF
Sbjct: 894  SINKNKTWFLVEKPREAKVIGLKWIFKIKKNADGTINKYKARLVAKGYVQESGIDFEEVF 953

Query: 94   APVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYK 153
            APVA+L T+RL++ALAA H WE+ HLD+KT FL+G+L+E+VYV QPEGF +K EEHKVYK
Sbjct: 954  APVARLETIRLLIALAASHGWEIHHLDVKTAFLHGELKEDVYVDQPEGFEVKGEEHKVYK 1013

Query: 154  LSKTLYGL 162
            LSK LYGL
Sbjct: 1014 LSKALYGL 1021

[Close]

BLAST of CmoCh04G021110 vs. NCBI nr
Match: KAG7553951.1 (Zinc finger CCHC-type [Arabidopsis suecica])

HSP 1 Score: 151.8 bits (382), Expect = 5.2e-33
Identity = 72/128 (56.25%), Postives = 96/128 (75.00%), Query Frame = 0


Query: 34   TVSKDVLLMLTEKDSTKAAWETLQTMHLKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVF 93
            +++K+    L EK              +KKN++G + K+KARL+ KGYVQ+ G++FEEVF
Sbjct: 894  SINKNKTWFLVEKPREAKVIGLKWIFKIKKNADGTINKYKARLVAKGYVQESGIDFEEVF 953

Query: 94   APVAKLGTVRLILALAAQHKWEVPHLDIKTTFLNGDLQEEVYVAQPEGFVIKAEEHKVYK 153
            APVA+L T+RL++ALAA H WE+ HLD+KT FL+G+L+E+VYV QPEGF +K EEHKVYK
Sbjct: 954  APVARLETIRLLIALAASHGWEIHHLDVKTAFLHGELKEDVYVDQPEGFEVKGEEHKVYK 1013

Query: 154  LSKTLYGL 162
            LSK LYGL
Sbjct: 1014 LSKALYGL 1021

[Close]

BLAST of CmoCh04G021110 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 96.7 bits (239), Expect = 1.8e-20
Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 0


Query: 61  LKKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQHKWEVPHLD 120
           +K NS+G + ++KARL+ KGY QQ+G++F E F+PV KL +V+LILA++A + + +  LD
Sbjct: 135 IKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLD 194

Query: 121 IKTTFLNGDLQEEVYVAQPEGFVIKAEE----HKVYKLSKTLYGL 162
           I   FLNGDL EE+Y+  P G+  +  +    + V  L K++YGL
Sbjct: 195 ISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

[Close]

BLAST of CmoCh04G021110 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 62  KKNSEGNVIKHKARLMEKGYVQQQGVNFEEVFAPVAKLGTVRLILALAAQ 112
           K +S+G + + KARL+ KG+ Q++G+ F E ++PV +  T+R IL +A Q
Sbjct: 78  KLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127

The following BLAST results are available for this feature:

BLAST of CmoCh04G021110 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.4e-25	40.14	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.4e-19	39.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.4e-19	43.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.3e-18	43.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]

BLAST of CmoCh04G021110 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q0J8A6	1.7e-34	60.00	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	1.7e-34	60.00	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]
A0A0P0XB91	1.7e-34	60.00	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
A0A251U1A0	5.1e-34	55.32	Putative zinc finger, CCHC-type OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr09g02...	[more]
Q10F84	2.5e-33	71.29	Gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0092M19.11...	[more]

BLAST of CmoCh04G021110 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8107251.1	3.6e-34	60.00	hypothetical protein EE612_041900 [Oryza sativa] >BAF22809.1 Os08g0125300 [Oryza...	[more]
EEC84282.1	3.6e-34	60.00	hypothetical protein OsI_30754 [Oryza sativa Indica Group]	[more]
KAG7538346.1	5.2e-33	56.25	Ribonuclease H-like superfamily [Arabidopsis suecica]	[more]
KAG7559162.1	5.2e-33	56.25	Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7553951.1	5.2e-33	56.25	Zinc finger CCHC-type [Arabidopsis suecica]	[more]

BLAST of CmoCh04G021110 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.8e-20	44.76	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.7e-05	42.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 59..161 e-value: 6.5E-36 score: 124.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 21..100 e-value: 9.1E-7 score: 28.7
None	No IPR available	PANTHER	PTHR11439:SF322	CLASSICAL ARABINOGALACTAN PROTEIN 9-LIKE	coord: 61..161
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 61..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021110.1	CmoCh04G021110.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding