CmoCh04G021080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G021080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	RING-type domain-containing protein
Location	Cmo_Chr04: 13506098 .. 13510680 (-)
RNA-Seq Expression	CmoCh04G021080
Synteny	CmoCh04G021080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCGTACCTCTCTCAATTCCTTATTCAACTTTTCTGTTTTTTTTGCAGAAAATTAGTGGAACCCATTTGTAATTTTGTGTAATTTGAACTTTTTTGGGTCTAAATTCTCAAGTTCCTTCATTATTTGGTGGTATGGAGAATGTAGAACTGAATTTGGAGGTGTTAGCCTGATTTCTCGCTAGCATTTTGTTGTGTTTCTCTGCTCTTATCTTCTGCTAACAATTTCTGCCCTGCTTTGTTTTTCTACCTCATAAGGAAATTTGAATATAAAAAAAGTTTCTGAGGCTCTGTTTGCTTGGATTTGATTGGTCATTTTGTAATACTTTCTGGTATGTGTGGAGGGGCCTGCATATGGGCTTGGGTTTGAACTCCCAAACGAAGTTATTTCACTGTCTGGTGGGTATAGAGAAACCTGCATCTGGGTCCCACCTGATTTGAAAGGCCTCGGTTAATCGTTTTTGAAATTTCATCTCTGTGCTTGTGTTGAAAAGAAGGTTGCGGCAGTTATTTCCACTCTTGTGTATTTTTAAGGGTAAATTTCAGATGGGCACTCATAATCTCTGGCTATTGAGATTTTGCTTGCTAATACCTGTCAGCTGTCATTACATAAACTTGCTTTTTAAGAGGACGGGAAGTCTTATATTATGAAATTAGAACATTACTGTAATATATTCTGACTGTGAGTCTATAATATATTTGTCTTGACATGGAATTGTGGAAGAACAATATACAGCCATAACTTGAACGTAGAGGAGTCTTATGCAATACCAAAATCTAGAGCTAGTTTAGTCCTTTATAAGGCCTAGTTTGAAGTAGGTTTAAATATTGATGAGTGTCTTCTTGGGCTTAGTCTGGAACTCTGGGGTAGTATATGGTTTGTTCATATGAATGCAAGTTACATTGCAATTCATGCTTAACATGGTTAACTCAGCTCTAGATATGCATGAAGATTTTTTCTTTGCCATGAATGAGCTGCCATTTACATGTTCTATTATTTTCTCTTTGGAGATTTGTGGGAATGCATTGGAAAAGTCCTTCCCGCTCTTAACATCTGAATTAATAGATAGAATCAATTTATCCTTTTTGCCTGCAGGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATGTATGTGATTCGTCTACTTTGTTTTCTAATCTCATATAACCTAACCAATTTCATTTTGTTCTTCCTCGGTAAAGAACACAAATTTAAACATTCCTTTGTGATGCACAGTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGGTAGGTAGTCTCTTTAGTTATTGTTTCTCCTTGGGCTTGTGGAGTGTTTGATTCCATGTATTGGAAGTTTTTCATGCTTGTAGGCTCATAAATAGAGATCAAGTGACTTGGATTTTCCACCAACGTCTGGACATTAATATGGGTCCACTAGAATAAAGTGATACTATTTCATAATAATCACTCGCACTTTAATCTTAATGCAGCTTAATTTTACTGCAGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGTACAATCATGTTCTTCCACATGATCATGAATTCTTCGTCAATTGTTCTTTTTTTTACCTCTAAGGCTCTGGAAAATTGGAATACACAATTTTATTGTATATGTATTTTTTCCTTTGGAGAAAGAAATATTTTCCACTTGAGATGAAGTACAAAAAAGAGGATGAGGCATCCTCAAACCCATCATGGAGGCTTACGAAATGCATCCTAATTAGCACCAATATCTAAGAAAGAGTAATTACAAAAAAAGCTACAAAGAGAACTCTGTGTCTTGACTGTTAGTGACTAATTGAATAAATAATTGTGCAACCCTTCTAGAGAAAGCCTTAAACCTTTGGTGATTCGATATTTCTCTGTGATTTTCTCTCCATTTTTCTTTGAGCTAAAATATTTCAGTAATTTTCATTATATCATATTTACTTCATTTTCAATTATATGAATTTTTTCTTGTAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTGTAAGTTGGATTGGAAAATTATTCTTTTGCATATAATGCTGAATGTCAATCAAAATTTCAGCATCATTGATTTACCATCATATGCTATTGTCTGGGGAGTACTACTTAGGTTTTTGCATGGTGATGAATGATTATTAAGAAAACAACGCTTTCTTTTAGCACGCTGCCCTTAGACATGCTACAGTTCCCAAGAGTTTCATCAACTTTTTAGATTAAAATTTCCATTATTTGGATAGCTCCTTTTGCTGTACAATTGAAAACGATTTACAAAGGATGGGACTATGGTGTGGTATCATCATTGGAATAGCTATGCTTTTATTTTTTATTTTTATTTTGAGGTCTTTGTGCTTGATTGAAGCTAGTGAAAAAGGTAAAAGGGCTTAAAGCTAAAGGAATTATTAAGGCTATTCCTGCTTATTCCAGTTGAAATGACACGATACTTTTTCTGGTTATGATCTAACATATCCTTGAAAGAGGCATGTAATGATTACCTTGATTCTTGGTCATCCTGTATAAGTCTTAGAAAATTAGGTTGTATGGGCTATTATATTCAAGTGTTTGGTTTTTACAAGTTCCAAGTATATATATATATTGCTATGATATTTTGATACTCAGTTATTGATCTCTGGTTCCAGCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGTACGTTTACCTCTTCTCAAATGAACTAAGATTATTAGAGTCATATTAAGTTGTTACTCAGTCATATAGCAACTAGGTCTAGGTCCATTAATTGCTCACCATCTTGACTTTCTGATTGTTATTTTTATGGCTATACTATACAAGACCATTTATACTAAAGATCTCTGGATGTACGTCATAATGTGTCTTCAGAGTATCAAAGCTCTTGCAGCAAGTTTTTTTTGAAATTACTTGAAAAGATTGTGACCTGTTAGTTCAGATCGGGGTTTAAAATTACTTGAGCCTTTTGGGTTCTTGATCGGGAAAATGAACATTTTAGTGCTTTTTCTAATAGGAAACTAAAAATATTATTAACAGCGCCAAGAATAAAGATAGAAAAAAGGGGGATGAGATATTCCCACAAAACCAAGGGGTTACAAAATAGAATTCCAATGGATATGACCGTATGAATAAGTATTTTCGTGCACTTAAGTTTATGTTCGAAGCTTCATCATGAAAATATTCTTAGGATAATTTTAGTGTTATAGACATGTAAAAGTGGAGGATGCACGGCATAAATTTCTAATTTTTGAAAATTGATATGAGCTCTGTTTGATAATAATTGTTTTAAGTTTTACGTTTCATTAAATTAAGGTAGATAATGATTTGCCTGTTCTACTTTCTAGTTTTAGCACACTGTTGAAACATTGACAAAACTTCAACTTTTTCTAAAAGAACTACTATTTTTAGAGTTCAGGATTACGTTTCATTAAATTGACAAAACTTCAACTTTTTCTAAAAGAACTACTATTTTTAGAGTTCAGGATTACGTTTCATTAAATTAAGGTAGATAATGATTTGCCTGTTCTACTTTCTAGTTTTAGCACACTGTTTTACGTTTCATTAAATTAAGGTAGATAATGATTTGCCTGTTCTACTTTCTAGTTTTAGCACACTGTTGAAATATTGACAAAACTTCAACTTTTTCTAAAAGAACTACTATTTTTAGAGTTCAGGATTACGTTTCATTAAATTAAGGTAGATAATGATTTGCCTGTTCTACTTTCTAGTTTTAGCACACTGTTGAAATATTGACAAAACTTCAACTTTTTCTAAAAGAACTACTATTTTTAGAGTTCAGGATTTTGCTATGTTTTAAGAAACATTTTTACAAGTAGAATGGAAAATAAAAAAGAAAAATAAAATAAAACAACCTTAATTTCAAAACGGCGCTTCCCATCATTATATCTTTGAGCGAAAACATGCTATTGACATCCGTGCATGCGACAGGAACTCGCTAGGGAAACTTAAAAGAAGAATAAACATTAGGGAGACTCAGTAAACCATAATCAAAAGGGGCATGACCTGTAATACTTGTTCTGTGAACAGTATCATATTGTTGATATGCTTGCAAGTGATACAAACAGTAGGGAGGTTCATTTAACCTTCACAGACTGATAAAAAACACACTCCTTTTTTATGCAGGCAGTGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTACTGGTACATTGACTTTGAGTCTGCTTTAAATATATGTGGTTAA

mRNA sequence

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCAAAATTAGTGGAACCCATTTGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGCAGTGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTACTGGTACATTGACTTTGAGTCTGCTTTAAATATATGTGGTTAA

Coding sequence (CDS)

ATGGTGGTGGAGACTAGAGTGTTGACATGGAGGAGGGTGTTCAAGTCTCTCCAGGCTCTGGCAGCCCATGGTTTTCTTTTGTCCTTCACGCTTACGCTTGCTCTCAAGCTCGACCATCTCGTCTCTTACTCTTGGTGGTTCAAAATTAGTGGAACCCATTTGGTTGTCTTTTCACCCCTATGGCTTTTTCATTTAGTTGCAGCAAGAGGCAGATTTTCTCTACCTGCTCCATCAATGCCTCATGACCGATATTGGGCACCGTGGCATGCTGTCATGGCAACACCATTACTTGTTGCTTTCGAAGTACTTCTTTGTATATATTTAGAGTGCAGTAATGTTATAGATTTGAAGATTGTCTTTGTTCCCCTCATGATATTTGAGATAGCAATTTTGGTCGACAATATCAGGATGTGTAGAGCCCTACTGCCTGGAGATGAAGAAGACAACGTAAGCGATGAAGTTATATGGGAAACGCTTCCTCACTTCTGGGTCTCAATCTCCATGGTTTTCTTCATCGCTGCAACCCTTTTCACTCTTCTTAAGCTTAGTGGCAGTGTAGCTGCTCTGGGCTGGTGGGATTTATTTATAAATTACTGGTACATTGACTTTGAGTCTGCTTTAAATATATGTGGTTAA

Protein sequence

MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPLWLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVFVPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGSVAALGWWDLFINYWYIDFESALNICG

Homology

[Close]

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL
Match: A0A6J1EQP2 (uncharacterized protein LOC111436604 OS=Cucurbita moschata OX=3662 GN=LOC111436604 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.0e-100
Identity = 190/198 (95.96%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSGSVAALGWWDLFINY
Sbjct: 181 KLSGSVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL
Match: A0A6J1IDN8 (uncharacterized protein LOC111472200 OS=Cucurbita maxima OX=3661 GN=LOC111472200 PE=4 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 4.5e-99
Identity = 188/198 (94.95%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFL SFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSG+VAALGWWDLFINY
Sbjct: 181 KLSGNVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL
Match: A0A6J1DWU2 (uncharacterized protein LOC111023869 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111023869 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.4e-92
Identity = 173/198 (87.37%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW        +VFSPL
Sbjct: 1   MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWW--------IVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAP+MPHDRYWAPWHAVMATPLLVAFE+LLCI+LECSNV++LKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPTMPHDRYWAPWHAVMATPLLVAFELLLCIFLECSNVVNLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFE+AILVDN+RMC+ALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFELAILVDNVRMCKALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KL G VAALGWWDLFIN+
Sbjct: 181 KLCGDVAALGWWDLFINF 190

[Close]

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL
Match: A0A087HGR4 (RING-type domain-containing protein OS=Arabis alpina OX=50452 GN=AALP_AA2G114300 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.4e-78
Identity = 146/198 (73.74%), Postives = 172/198 (86.87%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           M+V+ RV++WRR++KS QA++AHG L SFTL LALKLDHLVS+SWWF        +F+PL
Sbjct: 1   MLVQRRVMSWRRIWKSFQAVSAHGLLFSFTLLLALKLDHLVSHSWWF--------IFTPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFH V ARGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+LLC++LE   V+DLKIVF
Sbjct: 61  WLFHAVIARGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           +PL+ FE+AIL+DN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLL
Sbjct: 121 LPLLAFEVAILIDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KL G VAALGWWDLFIN+
Sbjct: 181 KLCGDVAALGWWDLFINF 189

[Close]

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL
Match: A0A565AYU1 (RING-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS4982 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 3.4e-78
Identity = 147/198 (74.24%), Postives = 173/198 (87.37%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           M+V+ RV++WRRV+KS QA++AHG L SFTL LALKLDH+VS+SWWF        +F+PL
Sbjct: 1   MLVQRRVMSWRRVWKSFQAVSAHGLLFSFTLLLALKLDHVVSHSWWF--------IFTPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFH V ARGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+LLC++LE + V+DLKIVF
Sbjct: 61  WLFHAVIARGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDTYVVDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           +PL+ FE+AIL+DNIRMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLL
Sbjct: 121 LPLLAFEVAILIDNIRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KL G VAALGWWDLFIN+
Sbjct: 181 KLCGDVAALGWWDLFINF 189

[Close]

BLAST of CmoCh04G021080 vs. NCBI nr
Match: XP_023515362.1 (uncharacterized protein LOC111779463 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515363.1 uncharacterized protein LOC111779463 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 190/198 (95.96%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSGSVAALGWWDLFINY
Sbjct: 181 KLSGSVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. NCBI nr
Match: XP_022930119.1 (uncharacterized protein LOC111436604 [Cucurbita moschata])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 190/198 (95.96%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSGSVAALGWWDLFINY
Sbjct: 181 KLSGSVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. NCBI nr
Match: KAG6601754.1 (Kinesin-like protein KIN-7D, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032478.1 Kinesin-like protein KIN-7D, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.9 bits (956), Expect = 1.9e-99
Identity = 189/198 (95.45%), Postives = 190/198 (95.96%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNV+DLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVVDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSGSVAALGWWDLFINY
Sbjct: 181 KLSGSVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. NCBI nr
Match: XP_022973618.1 (uncharacterized protein LOC111472200 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 9.3e-99
Identity = 188/198 (94.95%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRRVFKSLQALAAHGFL SFTLTLALKLDHLVSYSWW        VVFSPL
Sbjct: 1   MVVETRVLTWRRVFKSLQALAAHGFLFSFTLTLALKLDHLVSYSWW--------VVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KLSG+VAALGWWDLFINY
Sbjct: 181 KLSGNVAALGWWDLFINY 190

[Close]

BLAST of CmoCh04G021080 vs. NCBI nr
Match: XP_022157056.1 (uncharacterized protein LOC111023869 isoform X1 [Momordica charantia])

HSP 1 Score: 348.2 bits (892), Expect = 5.0e-92
Identity = 173/198 (87.37%), Postives = 184/198 (92.93%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           MVVETRVLTWRR FKSLQALAAHGFLLSFTL +ALKLD  VSYSWW        +VFSPL
Sbjct: 1   MVVETRVLTWRRGFKSLQALAAHGFLLSFTLLVALKLDQAVSYSWW--------IVFSPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFHLVAARGRFSLPAP+MPHDRYWAPWHAVMATPLLVAFE+LLCI+LECSNV++LKIVF
Sbjct: 61  WLFHLVAARGRFSLPAPTMPHDRYWAPWHAVMATPLLVAFELLLCIFLECSNVVNLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           VPLMIFE+AILVDN+RMC+ALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL
Sbjct: 121 VPLMIFELAILVDNVRMCKALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KL G VAALGWWDLFIN+
Sbjct: 181 KLCGDVAALGWWDLFINF 190

[Close]

BLAST of CmoCh04G021080 vs. TAIR 10
Match: AT1G68820.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 296.6 bits (758), Expect = 1.6e-80
Identity = 146/198 (73.74%), Postives = 170/198 (85.86%), Query Frame = 0


Query: 1   MVVETRVLTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPL 60
           M+V+ RV++WRRV+KS QA +AH  L SFTL LALKLDH+VS+SWWF        VF+PL
Sbjct: 1   MLVQRRVMSWRRVWKSFQAASAHCLLFSFTLLLALKLDHVVSHSWWF--------VFAPL 60

Query: 61  WLFHLVAARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECSNVIDLKIVF 120
           WLFH V ARGRFSLPAPSMPHDR+WAP+H+VMATPLLVAFE+LLC++LE   V+DLKIVF
Sbjct: 61  WLFHAVIARGRFSLPAPSMPHDRHWAPFHSVMATPLLVAFEILLCVHLEDKYVVDLKIVF 120

Query: 121 VPLMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLL 180
           +PL+ FE+AIL+DN+RMCR L+PGDEE  +SDE IWETLPHFWVSISMVFFIAAT FTLL
Sbjct: 121 LPLLAFEVAILIDNVRMCRTLMPGDEE-TMSDEAIWETLPHFWVSISMVFFIAATTFTLL 180

Query: 181 KLSGSVAALGWWDLFINY 199
           KL G VAALGWWDLFIN+
Sbjct: 181 KLCGDVAALGWWDLFINF 189

[Close]

BLAST of CmoCh04G021080 vs. TAIR 10
Match: AT1G73950.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 252.3 bits (643), Expect = 3.4e-67
Identity = 127/192 (66.15%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 12  RVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPLWLFHLVAARGR 71
           RV KS+QA  AH FL SFTL L LKLDH ++YSWW        VV  PLW FH V ARGR
Sbjct: 5   RVLKSVQASVAHCFLFSFTLALVLKLDHSITYSWW--------VVCLPLWAFHAVVARGR 64

Query: 72  FSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECS-----NVIDLKIVFVPLMIF 131
           FSLPAP  P +R+WAP HA+++TPLL+AFE+LLC+YLE +       + LKIVF+PL+ F
Sbjct: 65  FSLPAPIAPRNRHWAPCHAIVSTPLLIAFELLLCVYLETAYADSPPAVSLKIVFLPLLAF 124

Query: 132 EIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKLSGSV 191
           E+ ILVDN RMCRAL+PGDEE +V+DE +WE LPHFWV+ISMVFF+AAT+FTLLKLSG V
Sbjct: 125 EVIILVDNARMCRALMPGDEE-SVNDEAVWEALPHFWVAISMVFFLAATVFTLLKLSGDV 184

Query: 192 AALGWWDLFINY 199
           AALGWWDLFIN+
Sbjct: 185 AALGWWDLFINF 187

[Close]

BLAST of CmoCh04G021080 vs. TAIR 10
Match: AT1G18470.1 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 251.5 bits (641), Expect = 5.9e-67
Identity = 129/196 (65.82%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 8   LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPLWLFHLVA 67
           ++ RRV KS+QALAAH  L  FTL L LKLDH VS SWW        +VF PLW FH V 
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWW--------MVFFPLWAFHAVV 60

Query: 68  ARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECS-----NVIDLKIVFVP 127
           ARGRFSLPAP  P +R+WAP HAV+ATPLLVAFE+LLCIYLE S       + LKI F+P
Sbjct: 61  ARGRFSLPAPVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLP 120

Query: 128 LMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKL 187
           L+ FE+ ILVDN+RMCRAL+PGD +D+++D+ IWE LPHFWV+ISMVF +AAT FTLLKL
Sbjct: 121 LLAFELTILVDNLRMCRALMPGD-DDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKL 180

Query: 188 SGSVAALGWWDLFINY 199
           SG V ALGWWDLFIN+
Sbjct: 181 SGDVVALGWWDLFINF 187

[Close]

BLAST of CmoCh04G021080 vs. TAIR 10
Match: AT1G18470.2 (Transmembrane Fragile-X-F-associated protein )

HSP 1 Score: 251.5 bits (641), Expect = 5.9e-67
Identity = 129/196 (65.82%), Postives = 151/196 (77.04%), Query Frame = 0


Query: 8   LTWRRVFKSLQALAAHGFLLSFTLTLALKLDHLVSYSWWFKISGTHLVVFSPLWLFHLVA 67
           ++ RRV KS+QALAAH  L  FTL L LKLDH VS SWW        +VF PLW FH V 
Sbjct: 1   MSCRRVLKSIQALAAHSLLFCFTLLLVLKLDHTVSSSWW--------MVFFPLWAFHAVV 60

Query: 68  ARGRFSLPAPSMPHDRYWAPWHAVMATPLLVAFEVLLCIYLECS-----NVIDLKIVFVP 127
           ARGRFSLPAP  P +R+WAP HAV+ATPLLVAFE+LLCIYLE S       + LKI F+P
Sbjct: 61  ARGRFSLPAPVAPRNRHWAPCHAVVATPLLVAFELLLCIYLESSYARWPPAVSLKIAFLP 120

Query: 128 LMIFEIAILVDNIRMCRALLPGDEEDNVSDEVIWETLPHFWVSISMVFFIAATLFTLLKL 187
           L+ FE+ ILVDN+RMCRAL+PGD +D+++D+ IWE LPHFWV+ISMVF +AAT FTLLKL
Sbjct: 121 LLAFELTILVDNLRMCRALMPGD-DDSITDDAIWEALPHFWVAISMVFTLAATFFTLLKL 180

Query: 188 SGSVAALGWWDLFINY 199
           SG V ALGWWDLFIN+
Sbjct: 181 SGDVVALGWWDLFINF 187

The following BLAST results are available for this feature:

BLAST of CmoCh04G021080 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh04G021080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQP2	7.0e-100	95.96	uncharacterized protein LOC111436604 OS=Cucurbita moschata OX=3662 GN=LOC1114366...	[more]
A0A6J1IDN8	4.5e-99	94.95	uncharacterized protein LOC111472200 OS=Cucurbita maxima OX=3661 GN=LOC111472200...	[more]
A0A6J1DWU2	2.4e-92	87.37	uncharacterized protein LOC111023869 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A087HGR4	3.4e-78	73.74	RING-type domain-containing protein OS=Arabis alpina OX=50452 GN=AALP_AA2G114300...	[more]
A0A565AYU1	3.4e-78	74.24	RING-type domain-containing protein OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS4...	[more]

BLAST of CmoCh04G021080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515362.1	1.4e-99	95.96	uncharacterized protein LOC111779463 isoform X1 [Cucurbita pepo subsp. pepo] >XP...	[more]
XP_022930119.1	1.4e-99	95.96	uncharacterized protein LOC111436604 [Cucurbita moschata]	[more]
KAG6601754.1	1.9e-99	95.45	Kinesin-like protein KIN-7D, mitochondrial, partial [Cucurbita argyrosperma subs...	[more]
XP_022973618.1	9.3e-99	94.95	uncharacterized protein LOC111472200 [Cucurbita maxima]	[more]
XP_022157056.1	5.0e-92	87.37	uncharacterized protein LOC111023869 isoform X1 [Momordica charantia]	[more]

BLAST of CmoCh04G021080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68820.1	1.6e-80	73.74	Transmembrane Fragile-X-F-associated protein	[more]
AT1G73950.1	3.4e-67	66.15	Transmembrane Fragile-X-F-associated protein	[more]
AT1G18470.1	5.9e-67	65.82	Transmembrane Fragile-X-F-associated protein	[more]
AT1G18470.2	5.9e-67	65.82	Transmembrane Fragile-X-F-associated protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019396	Transmembrane Fragile-X-F-associated protein	PFAM	PF10269	Tmemb_185A	coord: 35..198 e-value: 7.7E-55 score: 186.3
None	No IPR available	PANTHER	PTHR46859	TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN	coord: 9..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G021080.1	CmoCh04G021080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane