CmoCh04G019720 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G019720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	DNA repair protein XRCC2 homolog isoform X1
Location	Cmo_Chr04: 10105508 .. 10118329 (+)
RNA-Seq Expression	CmoCh04G019720
Synteny	CmoCh04G019720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGGTTCCGGCCAAATAAGCGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGTCTAATTATCAAGTTGAATTTGTCCGTTTGAACTTCTTGCATCGTTTATAATTGACAACTTCGATGAAAAATTGTTGGTGATTTACCTCGAAAGAATTTGAGAACAATTTGTGGGATATTAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGTGAGCTATTTGTGCCATTTAATATTGATAATATATTTACTTCAAGGTTATCTCCACGAGCTGAAATTTTGCTTAATGATATCTGTAATGTCTCGGGTCATTTCTAGGATTTATTGCGTCTTTGAGTTATTAATCTGTACATATGCTTCTGTTATACATTTGATATAGAGCTAGTCTTGATGATTGCTATTCTGCTTGCCTAATAAGAAAATAGCGCTCACAGTAAAATATTAGTTATTTACTATTTTTCTTGGAGGATTCTATTTCTTTGATGTGCACACAGAATAGCGAAGGAAAAATAACCTTGCTTATATTCTAAGATATCTATGGAGAATTTCCAAGAAAGATTGGCAATCTAGCTTCCAATCACGATTTAAGACAATGATTGGTTCAATCTCTGGCCTTGGAGATGAAATTGACGACCTTGAAGGTCTTCATTGCTTAATCTATGTTTTCACCGGTCTTTGTCCGGTAGGGAGGCTGGGGATATTTGATCCTTACTTTCTTTGTTGGAATCAGTCTGTGCAAATGTGGGGGAGTGGGAACTTTTTCTCTGGATCCCTTTGACCCTCTGAAGGGTTTTTCCTGTAAATCTTCTTTAATCTTTTGTGTGACTCTCACCATCCTTGATCTTTATTTACCTTGTTATGGAAGCTTAAAGTGCCCAAGAAAATCCTCATTGCTTATGGTTCGAGCGGAATGGGAGATTTTTTTGAACCCCACTTTTTGTATATCTAGTTTGAGGTTTGGAAGTTCCTTTTATGTTGGGCTGTTTCTTTCTATGCCCTTCATTATTCTCTTTCTTTTCTTGATGAAAGTAGCTTTTGTGATTAACTAAGATGGGTGAACTTTCATGCCAATAGCTCCAGTATACATGTTGTTCCAAGCTTTGCTACACAGTTGGTGGAGAGGTCATCCATAATCAGTAATTTCACTTGAGAAATATTGTTGGCTGTTTTTTGGATGGGGAGATAGAGAAATTGTGGACTTTTGTATCTTTTGAGCATTAGTTGCATTTCACTTATCCAATGGAAAGTTTCATTTCTCGTTTTAAAAATAAAAAAGAAAACAATGGTAAACTACAATTGCAAGTAGAGTATCTGTTCGTGAAAGAGTTTGAGACTGTCTTTTCTGTCTTTCCTAGTTTTGATGTTCCTAAAAACATTTCTTACTATTTTCATGTATCCTAATGAACACGCAGCTTGCTTAAGAAATATTGTTGTCTGTTTCTTGGGTGGGGAGATGGAGAACTTGTGGACTTTGTACCTTTTTTGCATTAGTTTCATTTAACTTATCCAACAGAAAGTTTCATTTCTCGTTAATTAAAAAAAAAAAAGGGAAACCACAGTTGTCAAGTAGAGCATCATTTGCTGAAGTAGTTTGAGACAGTATTTTTTGTTTTCCCTAGTTTTGATGCTCCTAAAAAGATTTTTACTATTTTCATGTATCCTAATGAACGCGCAACTTGTGTCTCTAGAAAAGATAGATGAATCTAAGTGTTAGACAAGTAGCTCAGAGTAGTGAAAAAGTGTAGAGGAAATAATCCATAGGGTATTAGAGGGAAAAATAATTGGGAAGATGTTGTAGACACAAAAGGGGACAGAAGTTTTGGTACAGAGGAGATTTGATGTCATGGAAGATTTTCATTAAAATAAAAAATAAATGGCTACACATATTGTCCATCTTCAAGGCTTTCCCTATTTGTTACTTAAGCATGAGAAGAAAATGTCATTGTATTTCTTGTATATTATGGATTAAATACGAGGCTTTCTTATATGGAAGAAAAACCATCTACCAATAAGGAAGAAAATCTTACAGATTAAAATAATAAGTATATACATAATGCATATCTAATATTACAAAATATAAAGAAACACTCCACCTCAAGCGGACTTATAGATGTCTTCCACAGCCAACGAAGTTGATCGAATTGTCCTTTCAAGAGCCCTTTAGTTAGAATATTAGCCGTTTATTATGTCGTTGGAGATCAGATATGCATATTACATATGCAGCAATCTTCTCCTTTATGAAATGCTTGTAAACTTCAGTATGCTTCATTCTATCATGTAGAACTAGATTGTGAATTATAGCAATGACAGTCTTGTTGTCACAATAGACGTGCATAGGTGTCTTTTGAGACAATTTCAGTTTTTCAAGGATTCTGTTAATCCATATACTTTCACAAATTCAATTGGGTAAGGCCCTAAATTGACTGCAACACCACTCTTGTCCACTTCATTTTGTTTTTTTTACCACATCATGTAACTAAATTTCCTCCAACAAAAGAACAATAAGCAGAAGTAGATCTTCTATCAGTAGTACTTTCAACCCAATATGCATCAGTGACACTTCAACTTGGAAATGGTTATGTTTCTAAAATAATATACACCTAGAGTTTCTTTCAAATACCGTAGGATTCTTTACAACTTGCTATTATTAGTGAGCCAATCATTTCTTCTTAGTCATCCACTGAGGATAATATTATGGATCCTGATTTAGTTGAAGAAAGTTTTTCATGTCTCTTGGTCTCCTCTTTAAGACAATGGGGTAGTAGAACTTACTAACATTACCTCCATCAAAGCCCTCAATCCCGACTCCTAGTAGTCATAAAGTTATCTCCACATAAGGTACATTTTTTATTCATAAGGTGATTCAAAACCCTACAGTTCATCTTTCACCCCTCTCGGTGTGATGACTTTGATGTTGAATATGAAGTTAGCCTAAGCAGTGTGGAATCTCTTATGGAGCCTATGGTTAATCATTTTGAGCTTTTATTTAAAGAAAATGATAAGGGGATTCTCCATTCTTCCTCTTTGGCGCCTAGCAAATTTGTATCTCTTATTGAAGCTTGTGATCTTGAATTACGGGGAATTCCATCTTCAACATTTTAAGGACTCCTTTTTTTACTAAAGTTTCCAGAGAGCTTTTTTTGGTCTTTACCTAATTCAAGTTTTGGGGTTCTCGTTTGTGGAGTATCTCAGCTGGTTTGTTAGATCTTTTTGGGCTGAGGATTTTAGCCTACTTTTTCTTGTATTTTCTTATTTTCAGTTGTTGTGTTCAAGTTCTCTTTGGAGTTGAGCTTTGGTTTGATGAGTCCTTTTTGTTTTTTGGTCGTTCTTTTTGTTCGAAATTGTTTTAAGATCTTGTTCTGTTGTCTTGTCCTATTTCTGGTTCTATTTTCTTTTTTCACTACCTTTAGGAGTTTGTATGTTTTGATCATTTTCCTTTTCATTTTCATTATATCCCCAATGAGAAGTTGTTTCTTGTTAAAAAAAATGTATTTGATAAGTCACACAAACGCAGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGGTACATTTCTTCTTATTTAAAACAAAGTTAGCCTTCTTCATGCATTTCATTCGCATACCTTTTTTTAAGAAACAGATTTCATTAATAAATGAAATAACAAAAAGGAATAAAGCCTCAATCTATAAACCAAAGAAGTTGTTAAAACTATATGTAAAAAAATTAAATTTGACATGAACTTATAGTTTTCAGTTCAATGGTAGCTCTCTCCAATTCATATTGATTTCCACTTGTTGGGTTTGCAACCACAAGTGAGGACACTGTCAAATTGTATTTAATAGTAAATAGGTAAATATAGGAGCTTATTAGTCTTTTTTTCATTTATTGTAATTTTACTATTATTGGTTTAGGACTTCCATGTGTACTAATATATACTCTGCTATATAGATCATGTATTATCCTCTACTATACAAATCATGTATTATTCTCTACTATATAGACGATGTATTATTCTTCCATATTTGGTCTCACAATAACCCAAAACTAAATATACCATAACACATCAGCCTAAACTTTTGGGTTCAATGGTGATTTAACCGTGAATGAAAAAGCTTTCAATTGATGGATAAAAGGATATAATTACATAACAAGGGATAGCAAGATTCTCTATTGGTCTCCCTTCTAACTTCGTTTGCTACTTGAGATTTCCCCCTTTAAATTAAATCTTTGGAAAGCTAAGATCCCAAAGAATGCTAGAAAATGAATTACAAAGACACAATTGATGCAACCCTCAAAGTTTAGGAGTATAAATTGATTTTTTCTCAAAAAGTTACTAATTTGTAGTATGACGGAATGCTAAAAAACACTGAGTAACAATGAGTCAGCCTACCTTCATAATTGAAATCTCTTCCACTAGTCAATTTCATAATTTCCTCCATGATGGGCCACCAAAAAGAAGCAGTCTGGTGACCTCCTAGTGGTAGACCAAGATAAGGAAAAGTAAGGATTCAACCTTACAGTGAAGCCTGGAGGCTACAAGAGACAGCTTTGGTCTTCTATATTAATCCTCATATGGCAGATTTAGCTGAATTTATTCTAAAACCTGATAGGCATTCCAAAAACCTGGTGGCCGTTAAAAATTTCCCTCTGTTTTCTAATAAAAGAACTGTTTTAATTCAAATATCCAGCATCTTCAATCTCCTGTTTTTATCCACCTTTGTACTTCAAGTTGGCTCTCTATAATTTTCTGCAACCTCCATTGTGTACAATTTGTCTATTTAATTCTTTAGACCTTTTGAATTTCAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGGTTTGTGCTAAAAATAATTTGGAACCTCGTGATGCGTCTCCTGCTAGATAGAGTATCCAATTTCTTCTTATTTGTCGATTTATTTCATGAACATAAAAGATAAAGATGATTGCATTCTTATGTTTTTTTTTTCTATCTTCCTCTGCCATGTCATTTATGCCAAAGGACTTTAAATTGGTTTTGCTACTAAGAGTACTGTAGAAAATACTCGTCTTAACGCACTTTCATTGTTCTTTTTTTTGGGGGGGGGGGGGGGGGCTANTGCCAAGAGTTTAGGTGGCCATTAGATTGAAATTCCTCTAATAACCTTTGAAAGTCTTCTCGCAAAAAATACTAATCTTTCTAGAAAATTCAATTGTGTATCCATCAGGGCCTAACGCCTAATTCTTAGGTTTTTCATACCCATTCTTATTTCTTCTAGAGAAAATGGAGCAATAAGAACAGAATTTTCTTTTAATAAGAATATAAGAAGACACCGTAGACCAGCAAAGATTAGAAGGAATAGGACAATTGCCTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATATAAAAAAGAGAACCCCAGAATTTCCTGCTCAAATTTTCTTTAAGCAAGAGGAGAAGCCCCAGTAATAGAAAACAGTTCTGCAATCAGATTTTTTCTTTTTTTAGCTGCCAAGAAATGATGAAAGCTTAATCAATGCAACTTACATTTTTAATCCAATTTCTTTCCTCAGAGAAATAAAACTCCATAATTTCACCTTTAATCGCAATTCTGATGTTTAGCTCAGAGGAGATAACACATTAGTTTCTGATTTTGCATCAAAGAACTCCAGTTCAGGTATGAGACTTTGTTCCTTTCTTTTCCTTTCTGTTTCAAATTCAGCATATCATTTCTTGATATCTTCTATTAATTTTCTGAGCTTTGAACTAATAAAAAAAATCCAGCCCATCCTTGAGAACAATCTTGAACAAGGGATTTCTCTATAACTTTTCCATATTCCGAATGAATAAGCCAACTGTTGTAGAACTGAAAAGGGGAAGGACCCCAAATGAATGCTCCTGCGTCAAGTAACAATGGAAAATGATCTAAAATGTGCAAGCTTGTCTAGATACTCTGGAGTTATCAAACAAACCATTCCATATTTTTGGTCAATGATCTCTATTCTGCTGGAATAAAGCCACATTAAAATTTCTTCTCTTGAATTCTAAAAGCTGAACAATCCATGCAATTAGGAGTATGATAAACTAAACCCCCAAAATGCTGCCCAGTTTCTTCAAAACAATATCTTTTCCAGTAAGGCAAATGAAGCTTTTGCAAAGAAATCCAACCACCATATCCATATCAACTTAGGATGGGAACTATCATTTTGTGACCATTTCTCAATTTTCCGATGGAAATTACCAATTTACCTCCACTTACCCTCAAATTCAAAAACTGAAAATTCATCATTTAACTTCAAAAACTTATCTGCCATAAATGGATTGATTAAAACTTTGGATTGTAAATAAACTTCTAGAGAAAATTGAATATCCTTCCAAGAGCTCTGGGCTAGCAATCTGGATAACAAAAATGAATTGAAAAATCTTTCACCTACATCATTGTCTTTCCTAACTCAACATTAGAAAGGAGGAGTCTTCTAGGATGAAAACTAAGTGTGGGGCTGCAATAGACAAGAGCATTATAATTTTCTATTTTGAAAAAAAGGAAAAATCCCAAATCGATAAAAAGAATAGCAAAAACATTAAGGTTAGAAAGGAATGGCCAAAGAATCTCCAAAGTTAGTAACTTGTAATGGCAGTTAAGAAAACACAAGGTTAAGCACAAAATTACATTTATTAGTGGCGACTAGTCAATGATGAAGCATAGCATGACCCACGACGAGATAGTCTAGCGATTATGTAACTACAATGATGGACTCCGGTGACAATGTGACCTATGTCGATGAATCCCTTCACCCTCAAGGTGAATCTCTTATGTGACGACGAGTCTCCCGATGGTGCCCAAATCTTGATGGGCGACACCTCCAACGTGCTACATATTTCCTACGACGGTGACACTAGACATGCCAAATCTTTGGTGAACACACCTACGACCAGCTACTCGTGACAGCCAACCTTTAGCATGACCTGTGTGCCTACAGCCCCCTGCGGCAGGCCATATTTGCAAATTTGAGGCCTCTCCTTGTGAAGGTTGAGACCTACGCCAAGCAGTCCAGTACTGTACATTAGTTTTCCTCGGTCACAGGGGACTTGCCATCTTCTCTATTATGGATTATCCTAGCAACAGCTCACTCGAGAAAGGGAACACAATAAATGGCTTTTTCATTTTCTTAGTCATAGGGATGGCACCATCTCCTCCACCTCTAAAACTCACAACCATTATCGATAGAAAGACCTATTTAATTGAGCTAGATGACAGATATAGGGAAACAAGGATAAAATTATCAATGATCACCAGAGACGAAGCCTTTTTCACATCACTCAAATGAGATTTTTTCCAATGGCCAATAACATCTTACCAGGCCCTACTATCAGCCCCACTGAATCAAAGTTCTTCAACGTTTTCCAAAACAAACCATTTGGATAGAGAAACTCATCAACAAGAAGGGTACTATGGTCGATATTTCTAGTTCCATAGAAATAGTGGTCTTAGTTAACTTTTTGTTCCAGCGAGTGTTGAACAAAAATGATGGACAGCCTTCCTCAACCTCATTGAAGATTAGCCTCTTTCATCCACCAAAAAACCTTTTCAACAACTAAAACGCAATCAATTTCAGAATAAGAAGCCAACCGACAAATACGCTTTCCGTCCCTTGCCTTCCATAAAAAAAAAAAAAAAAAAAAAAATCCATCACATTAACTAGAAAATCCCTATACAGAAACATTACCTTTCGATCCTCAACAAAAAGGGCAAGACAGTCATCACAGAGTTTCCCCGCTCCCTTGTTCCTATTGTTTGGGATACAGTGGCAATAATCACCTGTAAAGAAAATAGAGGTGTCCATCTCTTGATAATAGTCAAAGATTGAGTTTTTCCTTGCTCCTGTCTTTTAGGTTGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTATAACGCTACTTCAGGTTTCTTATAAAAAGGAAAGGAAAAAAGGTTGGAATTGTATTAAGGTGCACATATGTGAGAATTATAAATCTTTTCTTCTGCTCAACGTACTGCGCTTGCCTAATTTCTTATTGAATAGCCAATTGTATGTATAAATGTCGAATTTGGGAATCATTTCTTTCTTCTTTCTGTTTAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGTAGTGCCTTCAAATTTTAAATTGTTTAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCACACTTTGCATATGGGTGAATTTTTGCATTATTTAATGGCTACCTCTATCCATACTTTATATACAATGACTTGATTGAAGTATGATTGAATAAGGATAGGAATCATTAAATCTAAAAATTATGATTTTTTTTTTTATTTTACTAATAATTTATTAATTGACTTAATTTAATGTGAGGCATTCAAGATAGAATGCTCGGGAAAAAACAAATGACATATACCACGATTATTGTCTAGTTGNGCACACTTGTCAAATTAGAATTCTCACTAAATTTTGGGAAAAGGAGATTATTAGCTGCCATGTTTCTTTTCTGGTTATACTTTTTCAGGCATTCCAATTTAAGTCTTGCATGAGCTTCTTATTGTGAGTTACTGATGGAGTAGGGTTTGCGATAGAGAAAGTCTCCAGTTACTTTTTATCATGTGATTTGTGCCTCAGAGATGCATTTTTACAAATTCGGAGGATATTACTTCATTTTAATCTCACTCTCTATTTGAAGTACAGGAAAGTTGATTAGACATACTAGGAATGTTTGGTGGTTTCTGCTGCTTTGATTAGTTCTTTTACAAGGTTTAATAACATCATCTCTCTTTCTGTTAAAGAACAGATTAAACATCCTAGTCTAGGATATCCCCGTTTTTCTCTCTCAAATACTTATTTCCAAATCATCTCTTCGAGTTAACGTCTCAAGCTCCATTTCCTTCCTTTGCAGGGGTTGACTTTATCTCCCTGGTCTATAAATTTTGTAGGCTCCCTCTTCTTTCCATTGACGTGATTGTTTCTTATTAGAAAGAAAATTAGAAAACTATTCCCCCTACTACTTCATATAGATACCATCAATAATAAAAGAATACTAAACTACACCTCATACAAGCCAATGGTAACTTTTTTCTCGCATGCATAATTTTGTGAGAATCATCCAAAAAAAAGGTGTTTCAACAATGTACAATTGTGTTCCCATTGTTATGTATTCCTAGTGTCATGACAATTTTATGTATTTACTCTCTCAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGGTGAGTTTAAGGCCAAAAGGGACTTTTTTTCCCATATGTGAAACAAAAAGTTGCATAGCATAGTCTTAACTCTTGAAGAATTATGTTTCTTGTACTTTACTGCCTAACTCGGTATGCTTTACAAGATTGGTGATACGTGCCTAGTCTTAACCGTTTCATATTTGAGATATGAATGCTCACTCTGATCCATAGACTTGCATGCTTCTTTCACATGGTCAAGTACTTTAATAACTTGTTACAATTCTCTATGACTATTATGCTTCATATTGCTTGAAGACTTGCTTTGCGAATTGGGAGATCTATGATATGAATCTACGTATCACCAATTCTTTTGTTATTCTTGCCCATGTTTTGGTTGCTTCATTTTCAATCTCTCTTTTCTTGGATAGGAAGCAACTACCTTCATTGGTTCTTCCATCAAAAGAAAAATAAGGAGAATGATGTTATGCTATATGGTGTGACCTTGATTTCCAAATTGATGAACTTTTCAGGTATTGATATGAGTTGGAAACTGTAAATTTCACTTTAACTATATTTAGTCTTTTTTAAGACAAGATTTCATTGAGATAAATGAAAGAATGCAAGACATAAAAAACAAGCCCACAAAAAAAGAGGCCCAACACTAACTATAAGAACGAATCCAATCCAAAAGAATGTGACAAGTAATTACAAAAAGTGTAATTAATATACTCACACAAAAAATAAATAAATCTAGCTAACCCTTAAAACTCCTCCCAAGACCTCTCAACCTCTCTAATTATCCTACCGTTCATCTCAAGCTAAATTTCCCACAAATGGGGGGGAAAAGAAAAGAAGCCTTCAACAGTGCTTTCCTTTATCTTGAGAAGGAGGGTTCAGGAGCACTTCCTTATCATAGAATAACAGACTTTGTCGCGAGCCAACACAATCCCATAAGTCATGAAAAATTGATTCCAAAGGAAGAGAGCAAACCGACAATCTTTCTGTCGTTTGATGTACTCTTCTCTCAATAGGGGTTATGTTTTTTTCTACTTTTTGGAAGATTTATTCCAAAGAATATTAAGTTCTTTGTGTGACAAGTTATTCATAGATGAGTAAACACTCTTGCTTTAATCACTATAAATTCTGTTGGAACTAATAATTATCAACAATTGAAAAGCGTTCCTTTTGTAATAGCCCTTTAGCCTTGGTTTGAGAAATATTAAAACTACGGACATTGTTATTTTGATATTTCTGTTTCTAGCTATGCTTCTTTTGATGATATGACATACACTAACCCTCACAAACTTGTGTGTCAGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGGTAATCTATGAAATTTTCCCTGCCTATATTTTCTTTTATGAAAGCCATAACTTGCGTAGTTAGAAGTGTTGTCAGATTTTAAAGATAACAAGTCTCTCGATCACGTTAACCAGACTTGAGGTATTGCCTGAATGAAGAAGAAAACAAACATAAATTTAAGGATAAAAAACTAGAAATAAAATTGTTATCAAACAGTGCCTAAATCATATAAGAAGAGACAAGACATCCAAAGCTCCTGTTGTTACCATCACCTTCCTCTGAATTTAATGCATCATTCACTGATTTTCTGGAGACATTGTCCTCGCGGTGTACCCAAGGCTCAATGTTTTCCTTTCCTTCTTCTTCTGTGTTTTGGAGTCGAGTATTATAAGTCTCGTTTGCTAACTATTTAGTTTTTAAAAATTAAGTGTATGAATAGTCTACCTAATGGTTTCTTTGTTTTATTATCTACTTCTAAAAGTCGTCTTCAAAATCTAAATCATGTTTTGAGAACTAAAAAAATGTAGTTATGTTTTTAGAATTTGGCAAAGAATTCTAGTATTTAGATAGAAAAGATGAAAACCAAAATCAAATCCAAATAGTTATTAAACGAAATCATATCTATTTGTTTGGATTGAAAATTATATCAAGCCTTAGTTTCTATTTGAAAATTTGATGATCGCTATCTTTTTTTTGTTTTCGTTGTTGGAATGTCTTCTTATAGTAAACTACAACTGTAAACACATTCTCATTTTTAAGCACTATCATTAGAATCTTTCTTAAATTATAAACAAATAATGGAAAATTAGTCATTTTGTATTTAAGTCTTATTCCATTTTAGTCTAGTTCCAAAGTACTCCACCAGAATGATATTTTGATCATTCTAACCTTAGAAAGAGACTAATTTGTTTGGGTTTTGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGGTTTGATTACATATTATGCTCAAAAGTGGAATGATTTGGTCAACTTTCTATATATTCAGTCATTTATCTGATAGCTTTTATTGCCTTGCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGTGAGAAACCAACCCATTTTGCATATATTATCACTAAACTCATCAACCTCCATACTCATCGATAGTAATTGATATGTATTATTTCTTTTAAAGTTAGAGGTTCAAATTCTCGTAGTACTAACTTTAAATGGATAAGGGGTTAAATGTATTTGTTGTCTAAATAAACTTACATGAAAAAATTTTGGATTTTACATTTGTACCTGCAGGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAAAGCATCTACTTTATTATGATAGTTAACGTCTAAAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAAATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATAATTTCAGTGATATTTTCTTTTTGTTGACTTGTATTCAT

mRNA sequence

CAGGGTTCCGGCCAAATAAGCGCGTTGCAATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGAACTGCATTTGTTTGATATGCCACTGACCAGTTCTTGGGCGTTCTTATGATTCCAGGTCAGCCTTTTGTTTTTATTTGAATAACGTTTGGATGTCCAAGTTTTGTATTATTATCATTGTAGTTGAAGTTTTTATTGTTCAACTATCTAAAAAGCATCTACTTTATTATGATAGTTAACGTCTAAAAGTGGCGTTTTAAACTATGGTATGCTCGTCAACAAAAATTAATGTTGATGTTTTCTACCTCAAATATCATACAAAAATGTAAATAATTTCAGTGATATTTTCTTTTTGTTGACTTGTATTCAT

Coding sequence (CDS)

ATGGCGCTCCGCCAGTGGATCGACGGCGATGAGACCGCCGCGGAGATGCTTACTAGAGTCCACAAAGAGCGAACCTCCTTGCTTGTTCCGCCTCTCCACAGAGTTCCTCTCCACGTCGGCAATGTGGTCGAGCTTGTTGGACCCTCTGGTTCCGCCAAGACGCAGATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAATGGGATCCGCTATGGAGGCTTGGAGTGTTCGGTGGTGTTCATTGACTTGGATTGTCGTCTTGACATCTCAAGGCTTTCCCAAGTTTTGAAGCTTCGAATTTTGGAAGGAAATGGCAGCGGAGATTGGGGAAATTTTGATGCACTATATACTACATGCCTGAGAAGATTCTTTTACATCCGTTGCTATGACAGTTTTGAATTTCTTGCCACTCTCAAGACCATGCACCATAAACTTCAAAAAGAAAGAGATGACCTTGGAATTCGGTTGCATCTACTCATGATCGACAGTATTGGAGCTTATCATTGGGTTGATCGTGTCTCTTCATCCTTGCCTTTGTGGGGTTACAACAGGAAAGGCTTTTCTCTTGCAAATATGTTAGAAGCGGCCGTAGAAGAAGTTAAAAAGCTTTTGCTGGTGCATCCGAGTATTGTTATTGCTTCAAAAGCTACCATTTTTGGGGATAGATCTTCTGACATAGTGAGACGTGAAAAATCTTTATCAGAGACGGAATCAAGACATGGGAAAACCGATGGTGGACAAGTTTTGTACCGTGAGTATATGCCTTCTGCATGGCAGTCTTTTGTAACGCACAGAGTTTTTGTTCGAGGCTCAGACGAATATCTTACAGTGAGCAGTTGTGAGCATCAGTCAATATATTTTTCTGAATGGCTGCTACCATCCCTGGGTGTCCTCGATAAATTTATTGTCAAAAATGCTGGCGTCTTTATGGTACCATGA

Protein sequence

MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLGVLDKFIVKNAGVFMVP

Homology

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BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 315.5 bits (807), Expect = 7.0e-85
Identity = 160/328 (48.78%), Postives = 227/328 (69.21%), Query Frame = 0


Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 183
                          + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVG 186

Query: 184 LLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKAT 243
           +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V+A+K T
Sbjct: 187 VLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGT 246

Query: 244 IFGDR-SSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLT 303
           I+ ++  ++   R+ S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y +
Sbjct: 247 IYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQS 306

Query: 304 VSSCEHQSIYFS-EWLLPSLGVLDKFIV 308
           + + +   + +S EWL P L  +D+FIV
Sbjct: 307 LQTGQQNLLAYSLEWLQPQLSRIDRFIV 333

[Close]

BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.1e-21
Identity = 80/285 (28.07%), Postives = 131/285 (45.96%), Query Frame = 0


Query: 11  ETAAEMLTRVHKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R+ + R+SL  + P L      P+H G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLARL-EGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALYTTCLR 130
           LPK       GGLE  V+FID D   D+ RL  +L+ R+ + +        + +   CL 
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSS--------EEIIKYCLG 128

Query: 131 RFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWG 190
           RFF + C  S   L TL ++              L LL++DS+ A++W+DRV+       
Sbjct: 129 RFFLVYCSSSTHLLLTLYSLESMFCSHPS-----LCLLILDSLSAFYWIDRVN------- 188

Query: 191 YNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHG 250
               G    N+ E+ + +  + L     +V   +  +F    + + +   S  E      
Sbjct: 189 ----GGESVNLQESTLRKCSQCL---EKLVNDYRLVLFATTQTIMQKASSSSEEPSHASR 248

Query: 251 KTDGGQVLYREYMPSAWQSFVTHRVFV------RGSDEYLTVSSC 285
           +     + YR Y+  AWQ  V HR+F       + S+++  VS C
Sbjct: 249 RLCDVDIDYRPYLCKAWQQLVKHRMFFSKQDDSQSSNQFSLVSRC 259

[Close]

BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-20
Identity = 84/272 (30.88%), Postives = 127/272 (46.69%), Query Frame = 0


Query: 11  ETAAEMLTRVHKERTSL--LVPPL---HRVPLHVGNVVELVGPSGSAKTQILIQAAVNCI 70
           E+  E+L R+ + R+SL  L P L      P+H G++ E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLARL-EGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALYTTCLR 130
           LPK       GGL+  V+FID D   D+ RL  VL+ R+ + +        +     CL 
Sbjct: 69  LPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSS--------EEAMKLCLA 128

Query: 131 RFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSSLPLWG 190
           R F   C  S + L TL ++   L          L LL++DS+ +++W+DRVS       
Sbjct: 129 RLFLAYCSSSMQLLLTLHSLEALLCSRPS-----LCLLIVDSLSSFYWIDRVSG------ 188

Query: 191 YNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSETESRHG 250
               G S+A + E+ +++  +LL     +V   +  +F    S + +   S     S   
Sbjct: 189 ----GESVA-LQESTLQKCSQLL---ERLVTEYRLLLFATTQSLMQKGSDSADGPSSSKH 245

Query: 251 KTDGGQVLYREYMPSAWQSFVTHRVFVRGSDE 278
             D G + YR Y+  AWQ  V HRV     DE
Sbjct: 249 PCD-GDMGYRAYLCKAWQRVVKHRVIFSRDDE 245

[Close]

BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot
Match: Q97BJ9 (DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) OX=273116 GN=radA PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.9e-05
Identity = 39/130 (30.00%), Postives = 61/130 (46.92%), Query Frame = 0


Query: 42  VVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLK 101
           + E  G  GS KTQI+ Q AVNC +PKE      GG +  V+ ID +      R+ Q+ K
Sbjct: 110 ITEFFGEFGSGKTQIMHQLAVNCTMPKE-----KGGFDSDVMMIDTENTFRPERIIQMAK 169

Query: 102 LRILEGNGSGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 161
            + L+ + +             L+R    R Y+S   +     +  K Q+   +  IR  
Sbjct: 170 SKGLDPDET-------------LKRIHVARAYNSHHQI----LLAEKAQETAKEFNIR-- 215

Query: 162 LLMIDSIGAY 172
           LL++DS+ A+
Sbjct: 230 LLIVDSLTAH 215

[Close]

BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot
Match: O75771 (DNA repair protein RAD51 homolog 4 OS=Homo sapiens OX=9606 GN=RAD51D PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.2e-05
Identity = 42/161 (26.09%), Postives = 73/161 (45.34%), Query Frame = 0


Query: 37  LHVGNVVELVGPSGSAKTQILIQAAVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL 96
           L+ G V E+VG  GS KTQ+ +  A N             GL+ +V+++D +  L  SRL
Sbjct: 97  LYTGEVTEIVGGPGSGKTQVCLCMAANVA----------HGLQQNVLYVDSNGGLTASRL 156

Query: 97  SQVLKLRILEGNGSGDWGNFDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDL 156
            Q+L+ +  +     +           LRR   +  +D F+ L  L+ +   + ++    
Sbjct: 157 LQLLQAKTQDEEEQAE----------ALRRIQVVHAFDIFQMLDVLQELRGTVAQQVTGS 216

Query: 157 GIRLHLLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANML 198
              + ++++DS+ A      V S L L G  R+G +L   L
Sbjct: 217 SGTVKVVVVDSVTA------VVSPL-LGGQQREGLALMMQL 230

[Close]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL
Match: A0A6J1GZX5 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458674 PE=4 SV=1)

HSP 1 Score: 646.0 bits (1665), Expect = 8.3e-182
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAGVFMVP
Sbjct: 301 VLDKFIVKNAGVFMVP 316

[Close]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL
Match: A0A6J1KC54 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 628.6 bits (1620), Expect = 1.4e-176
Identity = 307/316 (97.15%), Postives = 312/316 (98.73%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDE+AAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNG+GDWGNFDALY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDWGNFDALY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGI L LLMIDSIGAYHWVDRVSSS
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIGLRLLMIDSIGAYHWVDRVSSS 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWGYNRKGFSLANMLEAAVEE+KKLLLVHPSIVIASKATIFGDRSSDIVRREKS SET
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDIVRREKSSSET 240

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           ESRHGK+DGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 241 ESRHGKSDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAG+FMVP
Sbjct: 301 VLDKFIVKNAGIFMVP 316

[Close]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 541.2 bits (1393), Expect = 2.9e-150
Identity = 270/321 (84.11%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILE--GNGS---GDWGN 120
           AVNCILPKEWNGI YGGL CS VFIDLDCRLDI+RL QVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLP WG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIAS+ATIFGDRSS++VRR+K
Sbjct: 181 RISSSLPPWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASRATIFGDRSSNVVRRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           SLSE+E RHGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L  SSCEHQ  Y SEWL
Sbjct: 241 SLSESELRHGKPDGGLGLYREYMPSAWQSFVTHRVFVRDSDEHLAFSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG +DKFIV NAGVF VP
Sbjct: 301 LPSLGFVDKFIVTNAGVFSVP 321

[Close]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL
Match: A0A6J1DLP4 (DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 PE=4 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 8.4e-150
Identity = 268/322 (83.23%), Postives = 289/322 (89.75%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWI GDETAAEML RV K+R SL VPPLHR+PL  GNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIAGDETAAEMLARVLKQRPSLFVPPLHRLPLRAGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSG-----DWGN 120
           AVNCILPKEWNG+RYGGLECSVVFIDLDCRLD+SRLSQVLKLRILE NG+G     D  N
Sbjct: 61  AVNCILPKEWNGVRYGGLECSVVFIDLDCRLDVSRLSQVLKLRILEANGNGLSNTKDCEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           F+AL+ TC+RRF YIRCYDSFEFLATLKTMHH+LQKERD LGI +HLLMIDSIGAYHWVD
Sbjct: 121 FNALFATCMRRFLYIRCYDSFEFLATLKTMHHRLQKERDVLGIGVHLLMIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           RVSSSLPLWG+NRKGFSLAN+LEA VEEV+KLLLVHPSI IA+KATIFGD+SSD+VRREK
Sbjct: 181 RVSSSLPLWGHNRKGFSLANVLEAVVEEVRKLLLVHPSIAIATKATIFGDKSSDMVRREK 240

Query: 241 SLSETESRHGKTDGG-QVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEW 300
             +E+ESR+  T  G QVLYREYMP AWQSFVTHRVFVRGSDE+LTVSS EHQSIYFSEW
Sbjct: 241 PSAESESRYVTTSSGPQVLYREYMPFAWQSFVTHRVFVRGSDEHLTVSSSEHQSIYFSEW 300

Query: 301 LLPSLGVLDKFIVKNAGVFMVP 317
           LLPSLG  DKFIVKNAGVF+VP
Sbjct: 301 LLPSLGFFDKFIVKNAGVFIVP 322

[Close]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL
Match: A0A0A0KMH0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 3.2e-149
Identity = 268/321 (83.49%), Postives = 287/321 (89.41%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILE--GNGS---GDWGN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   NGS   GD  N
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDALY TCLRRF YIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTMHHKLQKERDSLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           R+SSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFGDRSSD V+R+K
Sbjct: 181 RISSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGDRSSDAVKRDK 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           +LSE+E +HGK DGG  LYREYMPSAWQSFVTHRVFVR SDE+L +SSCEHQ  Y SEWL
Sbjct: 241 TLSESELKHGKPDGGLGLYREYMPSAWQSFVTHRVFVRNSDEHLKLSSCEHQPTYSSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG LDKFIV NAGVF VP
Sbjct: 301 LPSLGFLDKFIVTNAGVFSVP 321

[Close]

BLAST of CmoCh04G019720 vs. NCBI nr
Match: XP_022957215.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata])

HSP 1 Score: 646.0 bits (1665), Expect = 1.7e-181
Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAGVFMVP
Sbjct: 301 VLDKFIVKNAGVFMVP 316

[Close]

BLAST of CmoCh04G019720 vs. NCBI nr
Match: KAG6601640.1 (DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 640.6 bits (1651), Expect = 7.2e-180
Identity = 314/316 (99.37%), Postives = 315/316 (99.68%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 68  MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 127

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRL+QVLKLRILEGNGSGDWGNFDALY
Sbjct: 128 AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLAQVLKLRILEGNGSGDWGNFDALY 187

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS
Sbjct: 188 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 247

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET
Sbjct: 248 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 307

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 308 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 367

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAGVFMVP
Sbjct: 368 VLDKFIVKNAGVFMVP 383

[Close]

BLAST of CmoCh04G019720 vs. NCBI nr
Match: XP_023550059.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 629.4 bits (1622), Expect = 1.7e-176
Identity = 310/316 (98.10%), Postives = 312/316 (98.73%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDETAAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDETAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNG+GD GNFDALY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDLGNFDALY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWG NRKGFSLANMLEAAVEE+KKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET
Sbjct: 181 LPLWGNNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           E RHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 241 ELRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAGVFMVP
Sbjct: 301 VLDKFIVKNAGVFMVP 316

[Close]

BLAST of CmoCh04G019720 vs. NCBI nr
Match: XP_022998310.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima])

HSP 1 Score: 628.6 bits (1620), Expect = 2.8e-176
Identity = 307/316 (97.15%), Postives = 312/316 (98.73%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MALRQWIDGDE+AAEMLTRV KERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGSGDWGNFDALY 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNG+GDWGNFDALY
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNGDWGNFDALY 120

Query: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVDRVSSS 180
           TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGI L LLMIDSIGAYHWVDRVSSS
Sbjct: 121 TTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIGLRLLMIDSIGAYHWVDRVSSS 180

Query: 181 LPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREKSLSET 240
           LPLWGYNRKGFSLANMLEAAVEE+KKLLLVHPSIVIASKATIFGDRSSDIVRREKS SET
Sbjct: 181 LPLWGYNRKGFSLANMLEAAVEEIKKLLLVHPSIVIASKATIFGDRSSDIVRREKSSSET 240

Query: 241 ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300
           ESRHGK+DGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG
Sbjct: 241 ESRHGKSDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWLLPSLG 300

Query: 301 VLDKFIVKNAGVFMVP 317
           VLDKFIVKNAG+FMVP
Sbjct: 301 VLDKFIVKNAGIFMVP 316

[Close]

BLAST of CmoCh04G019720 vs. NCBI nr
Match: XP_038891841.1 (DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 563.9 bits (1452), Expect = 8.6e-157
Identity = 281/321 (87.54%), Postives = 298/321 (92.83%), Query Frame = 0


Query: 1   MALRQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDE+A+EML RV KERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALSQWIDGDESASEMLARVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILE--GNGS---GDWGN 120
           AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDI+RL QVLKLRILE   NGS   GD  N
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDITRLYQVLKLRILEAISNGSSSTGDQEN 120

Query: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLHLLMIDSIGAYHWVD 180
           FDAL+ TCLRRFFYIRCYDSFEFLATLKTMHHKLQKERD LG+ LHLL+IDSIGAYHWVD
Sbjct: 121 FDALHATCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDGLGVGLHLLVIDSIGAYHWVD 180

Query: 181 RVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKATIFGDRSSDIVRREK 240
           RVSSSLPLWG+NRKGFSLAN+LEAAVEEV+KLLLVHPSIVIASKATIFG+RSSDIVRRE+
Sbjct: 181 RVSSSLPLWGHNRKGFSLANVLEAAVEEVRKLLLVHPSIVIASKATIFGNRSSDIVRREQ 240

Query: 241 SLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLTVSSCEHQSIYFSEWL 300
           SLSE+ESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVR SDE+ T SSC+ Q  YFSEWL
Sbjct: 241 SLSESESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRDSDEHPTGSSCDRQPTYFSEWL 300

Query: 301 LPSLGVLDKFIVKNAGVFMVP 317
           LPSLG LDKFIVKNAG+F+VP
Sbjct: 301 LPSLGFLDKFIVKNAGIFLVP 321

[Close]

BLAST of CmoCh04G019720 vs. TAIR 10
Match: AT5G64520.2 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-86
Identity = 160/328 (48.78%), Postives = 227/328 (69.21%), Query Frame = 0


Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 183
                          + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVG 186

Query: 184 LLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKAT 243
           +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V+A+K T
Sbjct: 187 VLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGT 246

Query: 244 IFGDR-SSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLT 303
           I+ ++  ++   R+ S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y +
Sbjct: 247 IYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQS 306

Query: 304 VSSCEHQSIYFS-EWLLPSLGVLDKFIV 308
           + + +   + +S EWL P L  +D+FIV
Sbjct: 307 LQTGQQNLLAYSLEWLQPQLSRIDRFIV 333

[Close]

BLAST of CmoCh04G019720 vs. TAIR 10
Match: AT5G64520.1 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 315.5 bits (807), Expect = 5.0e-86
Identity = 160/328 (48.78%), Postives = 227/328 (69.21%), Query Frame = 0


Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLKTMHHKLQKERDDLGIRLH 183
                          + LY +C++RF Y+RCYDS E L++LKT+H+++Q +++  G ++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTLHYRIQ-QQEACGSQVG 186

Query: 184 LLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIVIASKAT 243
           +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V+A+K T
Sbjct: 187 VLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVVLATKGT 246

Query: 244 IFGDR-SSDIVRREKSLSETESRHGKTDGGQVLYREYMPSAWQSFVTHRVFVRGSDEYLT 303
           I+ ++  ++   R+ S ++  S +  +   Q  +RE+MPS+WQ+FVTH++ +R S +Y +
Sbjct: 247 IYEEKYPANENNRKVSSNDHFSGNVASKAQQPPFREFMPSSWQAFVTHKIIIRKSADYQS 306

Query: 304 VSSCEHQSIYFS-EWLLPSLGVLDKFIV 308
           + + +   + +S EWL P L  +D+FIV
Sbjct: 307 LQTGQQNLLAYSLEWLQPQLSRIDRFIV 333

[Close]

BLAST of CmoCh04G019720 vs. TAIR 10
Match: AT5G64520.3 (homolog of X-ray repair cross complementing 2 (XRCC2) )

HSP 1 Score: 261.5 bits (667), Expect = 8.5e-70
Identity = 132/251 (52.59%), Postives = 176/251 (70.12%), Query Frame = 0


Query: 4   RQWIDGDETAAEMLTRVHKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQAAVN 63
           R WI GDETA +ML+RV K+R  LL+PPLHRVPL  GNVVE+ G S SAKTQILIQAA++
Sbjct: 7   RSWIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAIS 66

Query: 64  CILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGN--GSGDWGNF----- 123
           CILPK WNGI YGGL   V+F+DLDCR D+ RLSQ+LK R+L+ N  G+G W        
Sbjct: 67  CILPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNV 126

Query: 124 ---------------DALYTTCLRRFFYIRCYDSFEFLATLK------TMHHKLQKERDD 183
                          + LY +C++RF Y+RCYDS E L++LK      T+H+++Q +++ 
Sbjct: 127 KSCKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKYFTVLQTLHYRIQ-QQEA 186

Query: 184 LGIRLHLLMIDSIGAYHWVDRVSSSLPLWGYNRKGFSLANMLEAAVEEVKKLLLVHPSIV 227
            G ++ +LMIDSIGA+HW DR+SSSL L  +NRK  SL N++E  V+E+KKLLLVH  +V
Sbjct: 187 CGSQVGVLMIDSIGAFHWTDRLSSSLALETHNRKSLSLTNVVETIVQELKKLLLVHSLVV 246

The following BLAST results are available for this feature:

BLAST of CmoCh04G019720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	7.0e-85	48.78	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	7.1e-21	28.07	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	3.5e-20	30.88	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]
Q97BJ9	1.9e-05	30.00	DNA repair and recombination protein RadA OS=Thermoplasma volcanium (strain ATCC...	[more]
O75771	4.2e-05	26.09	DNA repair protein RAD51 homolog 4 OS=Homo sapiens OX=9606 GN=RAD51D PE=1 SV=1	[more]

BLAST of CmoCh04G019720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZX5	8.3e-182	100.00	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1KC54	1.4e-176	97.15	DNA repair protein XRCC2 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A1S3C491	2.9e-150	84.11	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1DLP4	8.4e-150	83.23	DNA repair protein XRCC2 homolog OS=Momordica charantia OX=3673 GN=LOC111022310 ...	[more]
A0A0A0KMH0	3.2e-149	83.49	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4...	[more]

BLAST of CmoCh04G019720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957215.1	1.7e-181	100.00	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita moschata]	[more]
KAG6601640.1	7.2e-180	99.37	DNA repair protein XRCC2-like protein, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023550059.1	1.7e-176	98.10	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022998310.1	2.8e-176	97.15	DNA repair protein XRCC2 homolog isoform X1 [Cucurbita maxima]	[more]
XP_038891841.1	8.6e-157	87.54	DNA repair protein XRCC2 homolog isoform X2 [Benincasa hispida]	[more]

BLAST of CmoCh04G019720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64520.2	5.0e-86	48.78	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.1	5.0e-86	48.78	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]
AT5G64520.3	8.5e-70	52.59	homolog of X-ray repair cross complementing 2 (XRCC2)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 28..311 e-value: 3.4E-28 score: 100.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..179
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..175 e-value: 4.0E-7 score: 29.5
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 4..314
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..222 score: 20.54854

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019720.1	CmoCh04G019720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding