CmoCh04G019540 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGCGAACCATAGTCAATCTCGAGTTCTCGACCATCTTCGACCTTGAGGGAGCAGTGATCGAATTGGCGCTCTCCCTCCCCAAAACATTTTGGTGTTCCTGATTTTCTCTGCATTTCAACGATGGATTCTGCTGAACCACTGATTAAGGATCTTGGAGAAAAAGCAAGAAGGGCTTCTCAACTATGGCTTGAAGGTTTTATTGACGCCTGTTGTCTTCACCGTGTTGTGATCCTCTGTCGCAGGTGCCATCTCACGTCTTCCACTTGTACTTTAACTTCGTAGTTTGATTTTCTATCGCTGAGATTACTGGACGGGAATCTATGAACACTAATTCTTACGTTTTTTCCCCCTTTTTTGCTTTTAATTGAGTTTAACAAGCTTTCTCAAGGATGTATGAGGGGAAAGAAGAAGGATTTTCTCGACTTCTTTACTATGAATTAAGCTTCTTTTGTTGTTGTTTTTATAATATCATCTGAGGATGTGTTTCAGGTCGAAAAAGCTTTTGATCCGGACGGGTCAGTGTTTTTTATTGAATGGTTTGATCTTCTTAGGAAGGTAATTCTACTCGACCCTCTCTCTCTCTCTCTTTGCGCATCATTTTCGGGATATAGCATTTACTCTTGTTCCCACTTTTCCGTTTCAAATAAACAACCAATTTGCCTTTTTTTTGTCGGCTCTTCTGTTGTGTTTCTGAATTACGCTCTTTAAGAACTTATTAACTAGTAATATGTTGCAAGGAATTCAAATAGGATAGCACGATCTAGTCTATGTTAGGAATATGCATTCTTTCCATCTCCACATTGGGATGAAGCTATCCAATTTGAACTTAATTCAATTTAGGAATTTATAAACTCACAATATTTCTTCCTTTGATTGATATGGAAATTTGCCTGCATCTTTGTCAATCTATTCATATATTGTCTAAAAATTTAATAGGGTTTCGGTTTTATGACGTTGCGGATCATACGTCTCAAAATCATTGAATTTGAACATTTCTCACGATAATGTCAAAAAATAACAACCGTAACTCAGTTTTTTATTCTGCATGCTTTAACTCAGTCTTGGAGCTAATGAAAACTAAGTTTTGGCTCTTGAGCAGTGGTCTAATCGAACTGAGTCAGAAACTTACTTCTCGACTCTTTCCTTAAAGTTTCTCTCCCTCCTTTTCTCTCTTGAGGGTGAGGGGGATGTCCACATTCTTGTGTCTTGTGGACTACGGTTTAGTTTTTTGTAATAGAAATTAATAACATATTTCAAGGACCTTAATTTTCTCAGAGATTGTTTTGACATATCTAGTTTTCATCAGCACTTCCCTGTCTCTTTTGTTTCTTAACAAAAAAATGTTAAACAATGAAAAGTCAGCAGCTTTCTTGCTTCCTTTTTTGCAGTCTATTGATCCTAAACTCAGTTGTCATCCCAACCCTACAATGGATATTACCGGATCAGCAATCAATGATTGGTTCTCACAAGTTGGCCGCATTTGGTGGTGCTTTAAAATTATATTCTTTCTTACGTCATGGACTGATACAACTTTTTTATGTAAGTACATATTTGATGCCATGTTTTTACTTGTGGGGTTAATAAAGAAGTTGTTTCTCCGGCATGCATCACAAATTATTTAATTTTTCCAACAGTTTCTGTCAAAATTAATTGGAAAAAGACGAACCACGTTTAAAATTACGCTTATAAACTTTTCTTTTTGCGAGTTCAGTAATATTCTTATGGATTATAATATTTCCGTTTGACAGGAGAATTTCTTTGATATTTCAATATGGTTGCATACTATGATTATTGTACTTAACTTGTTTATATGCAATGACTGAACATGATTCAATCAAGAACCTTGGATAACATATTTATTTATTTTGTGTTCATCTCAATTTTTTTTTACCGACTAATTGTTTATGTGAATATTGCTTGCAGTTGTTCTGGTTTTATCCAATGTACATTTTCAGCTTCATTCTGAGCAATATCTGGTATTTCTTTCCCTTCTATTTTCATTCATACTCACACGTTTCTTTTATCATTTCTGCCTCAAATTTGATTTAGTAGGTTTCTAATGCTTATGAATTCTTCAAGCCACATAGTTTCATGATTAAGATTTTATTCAGTTAACGCTTACATTTAAATCTCTGCGTACATCTGGTACACTCATACATCCAGATGGAACGGGTTCAACTAGTAGTTTTTGCGAAGTGACCATTTGTTGATCTGAAGTTTCTGGAGAGTTTCTTTCTGGTCCAGGTACAATGATATTGCTAAACATGGCTTTGCTGCAATGGGACAATCTGAGCCAACCGCAGTGGACTCCTCAGGACTAAACGATGGATCTTCCAATGCTGCTCAAACAGGAAAATCAATTGGATTGGGGAGGTACGTTTTTAATTTGGTCATTGGTGATTTCTGAAATGTTCTTTGCTGCTTGTTTGATGCACTTTTTTGCTTGATACTTGTTTAACCTAAAGTTTTTCTCAGGGTTGTAATAGGAATAGGAGAGCAGCTATATTCTCTACTTCTGATCAACTCCTTCTTCCTTGAGGTAATTGCTTTGAAATTTTGTCTTTCCTTGATGCTCTTATATTTGTTTCTTTCTACTTCATTTGGTTGTGTGTGGTTATCTTTCTTTTATTATGAGCATTTGTAGAAGCCGAGTTGCTTATTTGCAGTTATATATAACATTCACATTCTTCTTCTCGTATCCAATGTCTAAATTGTTTTCTGATACATGTAGGTCTATGCTACAGGTTTCTTGCCTTTCGTGGGAAAGACACTCAATTTTATGCTTCTTTCTTGGATGTACGCCTACTATTGTTTTGAGTATGTGGTGCTTTCCCTTTTAACTTATGATGTGCATCGACTATTCACTTGGTGAACTATTCAATTCAATTCTTTAACTTGTAGGTACAAGTGGAATCTTTCAGAAGTGAGTCTGGATAGAAGGCTGGACTTTTTCGAGTCTAACTGGGCTTTCTTTGCTGGTTTTGGTAGGACTCCATGACTTGATTGATTTATTTAGTTTTAGTTGCTATAGTTTGCTAGTTCCGGTTCTGAATATTAGCAAGGAAAATCTGCTGTTAAATAGTCCATTGCAGCTCCATATGATGTGAAGGTTGATTATAAAGATTAATTTGTTTGTTTTTCAGTGAGATGGCTATTTAGTTAGTTTGATAGGAGAAGTACTAAGTTTGTTTGTTATGATTGGAATATTTTAAAGCGACGGATCTAGGATATAGCTCAATTGGTTAAGGCATAAGGTTAAATGTTTGAATCCTCACATCCACATTCTTGAACTAAGAAAAAGAATCATTACAAATTGGTGGTGGGGAGGGTGAGAGAGGAGTTAAGAGTTCTGATATCAAGCTTGGCTCAAGGAGCCAGTTCTCTATTTACCTGAGATTTTATTCGTATGTTACCATCATTTCCGTACAATAAAAGGTTTCTTTATTCTTGGCTTCTCTCGCTCCCTAAGTTAAGACAACCACCATTATAGCTCTCAATTGGCATATATTGGCTCTTGGCAGTTAACATTAACTTCTTGGTAGACAAAATTGTTACAAATGTGAGCAGTGGATCTAGAAGCAAATATTGAGTATTTGATGGTGTTAAATCCTTTCTCATGACATTTTGCTTTCATTTCATATTTTAGAGTTTTATTTTTATTTCGTGTTTGACTTAAGGCTCATGTCTTTAATTATTAATTAAAATTTGAGCTCATTTCTCTTTTCTTGTCATGGTCACCATAGTTGTGATTTGAAACAATACGTTATACTTTTAAGGAAGTTTGAGGCATACCAGTTTAATGGTCTTTCCAGGTAGTCCTTGCGTTCTTGCGATATTTTTCTTCTCACCACTTGTGAGCTATGGAGTAATGGCTATCTTATTTCCACTGGTAAATCGAACCATTTGTCTCCCTCTCTTCACACACACAAACTCATTTCCTTCTAAATTTGTACCGATGTTCTCTTTCCTCAAATACTCACGTCTTACGGCTCTTTTGTTTGGGTTTCATCCCATATGCCTTTTAGTTTGTTCTGACAGCCACGGGCTCAGTTGCTGAGAAGGATATTTATTCACAGAGAACAACTTGGAAATGTGCAGGACTGGGAAGGCTTCCAATTTTCTATGCTGCAAATACATTGTCGTAAGTTGTCTTTCTTCACGCTAAACTTGTATTTGCAAAATAGAATAATTTGCTGAGACTATTCGAATAACCTTTGGATTTCTGATCTAATAATAATTTCTTGTATCTATATAGAATAGAAGTTGACTAAATGTGACAAGGAACGATGTTTTAAATGTTAAGCAAATGGTGCAAAATCTCTCTGGAGTTGTAACGGGGAAAACAGCAGTCTTTCTAAAAAATGGACAAAAGAAAGAAATTCATCTTCACGAAGATAATAGATAGAGGTTTATTTAGTGACTTTGTGCTCTGTAATATAGGAGTAGAATAAATTGTAGAGATTGAACCAACGAATGGAAAACCTGAAAAACTTCAATTATGTGATATTTTGAACTTTACTAGATTAGAACTGTCCGTGAAGCAGGGAAACTTTAGTATTGCCTACCAATGTTTTTTCCCCATGTTGATTGGCCTTGAAGGATGAAGCTCTTGACTCTCTTCCCTCATGAATCACAAGAAAAGATGCAGCAAAACAAGGAACTATAACAGGTTCTGGAGTCTGAATCAATACATATCCGTTTCATGAACAGTAAGCCAAAATTCATTAGCCATTGCCTTCTATTCAGAATATTTCCTGCATGTTCATTTATTTATGAAGTATTGCTGCATAATATATCGTCTCTCAATTCTTAATCTATCTGATGGAGCAGAATCCAAGTGGCTCAAGTCAGATGCTACAAGTGATTCCTACCTCATCCGTACAGAAACGATACCGTAGGTGAAGATCAACCATAGGTAGATTCATAACCGCAGTTTGTAAGATTGGTTGCTGTGTGAATATCGAATAGGTACGCAATTAATTGGGCGAATAGATAAGAATGTGCGATGCCGAGTGATAATTTTTCTGTAACCTCGTTAAATAATGTAAATAACTTATGTTTAGTAGAAAGATTGTTCCAACTCTCTGCTTCAGTTCTTTGTGTGAATTATGTACAATCAAGAATGAACAACTTAGAGTGGATAGAGTTGATAAAATCGTTGTGCA GAAGCGAACCATAGTCAATCTCGAGTTCTCGACCATCTTCGACCTTGAGGGAGCAGTGATCGAATTGGCGCTCTCCCTCCCCAAAACATTTTGGTGTTCCTGATTTTCTCTGCATTTCAACGATGGATTCTGCTGAACCACTGATTAAGGATCTTGGAGAAAAAGCAAGAAGGGCTTCTCAACTATGGCTTGAAGGTTTTATTGACGCCTGTTGTCTTCACCGTGTTGTGATCCTCTGTCGCAGGTCGAAAAAGCTTTTGATCCGGACGGGTCAGTGTTTTTTATTGAATGGTTTGATCTTCTTAGGAAGTCTATTGATCCTAAACTCAGTTGTCATCCCAACCCTACAATGGATATTACCGGATCAGCAATCAATGATTGGTTCTCACAAGTTGGCCGCATTTGGTGGTGCTTTAAAATTATATTCTTTCTTACGTCATGGACTGATACAACTTTTTTATTTGTTCTGGTTTTATCCAATGTACATTTTCAGCTTCATTCTGAGCAATATCTGGTACAATGATATTGCTAAACATGGCTTTGCTGCAATGGGACAATCTGAGCCAACCGCAGTGGACTCCTCAGGACTAAACGATGGATCTTCCAATGCTGCTCAAACAGGAAAATCAATTGGATTGGGGAGGGTTGTAATAGGAATAGGAGAGCAGCTATATTCTCTACTTCTGATCAACTCCTTCTTCCTTGAGGTCTATGCTACAGGTTTCTTGCCTTTCGTGGGAAAGACACTCAATTTTATGCTTCTTTCTTGGATGTACGCCTACTATTGTTTTGAGTACAAGTGGAATCTTTCAGAAGTGAGTCTGGATAGAAGGCTGGACTTTTTCGAGTCTAACTGGGCTTTCTTTGCTGGTTTTGGTAGTCCTTGCGTTCTTGCGATATTTTTCTTCTCACCACTTGTGAGCTATGGAGTAATGGCTATCTTATTTCCACTGTTTGTTCTGACAGCCACGGGCTCAGTTGCTGAGAAGGATATTTATTCACAGAGAACAACTTGGAAATGTGCAGGACTGGGAAGGCTTCCAATTTTCTATGCTGCAAATACATTGTCGATGAAGCTCTTGACTCTCTTCCCTCATGAATCACAAGAAAAGATGCAGCAAAACAAGGAACTATAACAGGTTCTGGAGTCTGAATCAATACATATCCGTTTCATGAACAAATCCAAGTGGCTCAAGTCAGATGCTACAAGTGATTCCTACCTCATCCGTACAGAAACGATACCGTAGGTGAAGATCAACCATAGGTAGATTCATAACCGCAGTTTGTAAGATTGGTTGCTGTGTGAATATCGAATAGGTACGCAATTAATTGGGCGAATAGATAAGAATGTGCGATGCCGAGTGATAATTTTTCTGTAACCTCGTTAAATAATGTAAATAACTTATGTTTAGTAGAAAGATTGTTCCAACTCTCTGCTTCAGTTCTTTGTGTGAATTATGTACAATCAAGAATGAACAACTTAGAGTGGATAGAGTTGATAAAATCGTTGTGCA ATGGATTCTGCTGAACCACTGATTAAGGATCTTGGAGAAAAAGCAAGAAGGGCTTCTCAACTATGGCTTGAAGGTTTTATTGACGCCTGTTGTCTTCACCGTGTTGTGATCCTCTGTCGCAGGTCGAAAAAGCTTTTGATCCGGACGGGTCAGTGTTTTTTATTGAATGGTTTGATCTTCTTAGGAAGTCTATTGATCCTAAACTCAGTTGTCATCCCAACCCTACAATGGATATTACCGGATCAGCAATCAATGATTGGTTCTCACAAGTTGGCCGCATTTGGTGGTGCTTTAAAATTATATTCTTTCTTACGTCATGGACTGATACAACTTTTTTATTTGTTCTGGTTTTATCCAATGTACATTTTCAGCTTCATTCTGAGCAATATCTGGTACAATGATATTGCTAAACATGGCTTTGCTGCAATGGGACAATCTGAGCCAACCGCAGTGGACTCCTCAGGACTAAACGATGGATCTTCCAATGCTGCTCAAACAGGAAAATCAATTGGATTGGGGAGGGTTGTAATAGGAATAGGAGAGCAGCTATATTCTCTACTTCTGATCAACTCCTTCTTCCTTGAGGTCTATGCTACAGGTTTCTTGCCTTTCGTGGGAAAGACACTCAATTTTATGCTTCTTTCTTGGATGTACGCCTACTATTGTTTTGAGTACAAGTGGAATCTTTCAGAAGTGAGTCTGGATAGAAGGCTGGACTTTTTCGAGTCTAACTGGGCTTTCTTTGCTGGTTTTGGTAGTCCTTGCGTTCTTGCGATATTTTTCTTCTCACCACTTGTGAGCTATGGAGTAATGGCTATCTTATTTCCACTGTTTGTTCTGACAGCCACGGGCTCAGTTGCTGAGAAGGATATTTATTCACAGAGAACAACTTGGAAATGTGCAGGACTGGGAAGGCTTCCAATTTTCTATGCTGCAAATACATTGTCGATGAAGCTCTTGACTCTCTTCCCTCATGAATCACAAGAAAAGATGCAGCAAAACAAGGAACTATAA MDSAEPLIKDLGEKARRASQLWLEGFIDACCLHRVVILCRRSKKLLIRTGQCFLLNGLIFLGSLLILNSVVIPTLQWILPDQQSMIGSHKLAAFGGALKLYSFLRHGLIQLFYLFWFYPMYIFSFILSNIWYNDIAKHGFAAMGQSEPTAVDSSGLNDGSSNAAQTGKSIGLGRVVIGIGEQLYSLLLINSFFLEVYATGFLPFVGKTLNFMLLSWMYAYYCFEYKWNLSEVSLDRRLDFFESNWAFFAGFGSPCVLAIFFFSPLVSYGVMAILFPLFVLTATGSVAEKDIYSQRTTWKCAGLGRLPIFYAANTLSMKLLTLFPHESQEKMQQNKEL Homology
BLAST of CmoCh04G019540 vs. ExPASy Swiss-Prot
Match: Q5BPL5 (Protein EI24 homolog OS=Arabidopsis thaliana OX=3702 GN=At4g06676 PE=2 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-109 Identity = 206/320 (64.38%), Postives = 249/320 (77.81%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy Swiss-Prot
Match: Q54PW9 (Protein EI24 homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0284253 PE=3 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 9.0e-22 Identity = 84/324 (25.93%), Postives = 153/324 (47.22%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy Swiss-Prot
Match: Q08DE5 (Etoposide-induced protein 2.4 homolog OS=Bos taurus OX=9913 GN=EI24 PE=2 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 2.8e-15 Identity = 70/242 (28.93%), Postives = 113/242 (46.69%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy Swiss-Prot
Match: O14681 (Etoposide-induced protein 2.4 homolog OS=Homo sapiens OX=9606 GN=EI24 PE=1 SV=4) HSP 1 Score: 82.8 bits (203), Expect = 8.1e-15 Identity = 68/242 (28.10%), Postives = 113/242 (46.69%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy Swiss-Prot
Match: Q61070 (Etoposide-induced protein 2.4 OS=Mus musculus OX=10090 GN=Ei24 PE=1 SV=3) HSP 1 Score: 82.8 bits (203), Expect = 8.1e-15 Identity = 68/242 (28.10%), Postives = 113/242 (46.69%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy TrEMBL
Match: A0A6J1H083 (protein EI24 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458837 PE=4 SV=1) HSP 1 Score: 664.5 bits (1713), Expect = 2.4e-187 Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy TrEMBL
Match: A0A6J1K7C5 (protein EI24 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492932 PE=4 SV=1) HSP 1 Score: 650.6 bits (1677), Expect = 3.6e-183 Identity = 330/337 (97.92%), Postives = 331/337 (98.22%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy TrEMBL
Match: A0A6J1H1Y7 (protein EI24 homolog isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458837 PE=4 SV=1) HSP 1 Score: 625.2 bits (1611), Expect = 1.6e-175 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy TrEMBL
Match: A0A1S3BE01 (protein EI24 homolog OS=Cucumis melo OX=3656 GN=LOC103488854 PE=4 SV=1) HSP 1 Score: 615.5 bits (1586), Expect = 1.3e-172 Identity = 309/337 (91.69%), Postives = 323/337 (95.85%), Query Frame = 0
BLAST of CmoCh04G019540 vs. ExPASy TrEMBL
Match: A0A6J1KG79 (protein EI24 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492932 PE=4 SV=1) HSP 1 Score: 611.3 bits (1575), Expect = 2.4e-171 Identity = 309/316 (97.78%), Postives = 310/316 (98.10%), Query Frame = 0
BLAST of CmoCh04G019540 vs. NCBI nr
Match: XP_022957442.1 (protein EI24 homolog isoform X1 [Cucurbita moschata] >XP_022957443.1 protein EI24 homolog isoform X1 [Cucurbita moschata]) HSP 1 Score: 664.5 bits (1713), Expect = 5.0e-187 Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0
BLAST of CmoCh04G019540 vs. NCBI nr
Match: KAG6601621.1 (Protein EI24-like protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 655.6 bits (1690), Expect = 2.3e-184 Identity = 334/337 (99.11%), Postives = 334/337 (99.11%), Query Frame = 0
BLAST of CmoCh04G019540 vs. NCBI nr
Match: XP_023515037.1 (protein EI24 homolog [Cucurbita pepo subsp. pepo] >XP_023515046.1 protein EI24 homolog [Cucurbita pepo subsp. pepo]) HSP 1 Score: 652.9 bits (1683), Expect = 1.5e-183 Identity = 331/337 (98.22%), Postives = 331/337 (98.22%), Query Frame = 0
BLAST of CmoCh04G019540 vs. NCBI nr
Match: XP_022998222.1 (protein EI24 homolog isoform X1 [Cucurbita maxima] >XP_022998232.1 protein EI24 homolog isoform X1 [Cucurbita maxima]) HSP 1 Score: 650.6 bits (1677), Expect = 7.5e-183 Identity = 330/337 (97.92%), Postives = 331/337 (98.22%), Query Frame = 0
BLAST of CmoCh04G019540 vs. NCBI nr
Match: XP_022957444.1 (protein EI24 homolog isoform X2 [Cucurbita moschata]) HSP 1 Score: 625.2 bits (1611), Expect = 3.4e-175 Identity = 316/316 (100.00%), Postives = 316/316 (100.00%), Query Frame = 0
BLAST of CmoCh04G019540 vs. TAIR 10
Match: AT4G06676.1 (CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 264 Blast hits to 262 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). ) HSP 1 Score: 397.1 bits (1019), Expect = 1.4e-110 Identity = 206/320 (64.38%), Postives = 249/320 (77.81%), Query Frame = 0
BLAST of CmoCh04G019540 vs. TAIR 10
Match: AT4G06676.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Etoposide-induced 2.4 (InterPro:IPR009890); Has 261 Blast hits to 259 proteins in 97 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 16; Plants - 81; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). ) HSP 1 Score: 334.0 bits (855), Expect = 1.4e-91 Identity = 172/268 (64.18%), Postives = 209/268 (77.99%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|