CmoCh04G017240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G017240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	transcription factor PRE6-like
Location	Cmo_Chr04: 8736921 .. 8737484 (-)
RNA-Seq Expression	CmoCh04G017240
Synteny	CmoCh04G017240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTCGCCTTTCTCCAACAATTCTTCATCTGCCTTTCTCTCACCTCTGCCCTCTGGCCCTCTCTGGATCTCCCCACTTTTCACACACACACACAAATGTCCACCAGAACCCCCCGTTCTAGACGCTGCCCTCTTCCGTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAACCGACGTTCCTCCTCCTCCACGGTATTCTCCCTTTTCTGTTTATCAATAACTGCTTGCGGTGGACTTAGACTGTTTTAATGCGTGTGGGGATGTAGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGAGCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGCATCACAACTCCATCCCAGGTTTCTTCTTCTATACACAATTTGGTGCTCAGATGTGGATTTCCCTACACACACCTATTTCAAACCCTCCATCTTTACCCG

mRNA sequence

AGCTCGCCTTTCTCCAACAATTCTTCATCTGCCTTTCTCTCACCTCTGCCCTCTGGCCCTCTCTGGATCTCCCCACTTTTCACACACACACACAAATGTCCACCAGAACCCCCCGTTCTAGACGCTGCCCTCTTCCGTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAACCGACGTTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGAGCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAATGAGCATCACAACTCCATCCCAGGTTTCTTCTTCTATACACAATTTGGTGCTCAGATGTGGATTTCCCTACACACACCTATTTCAAACCCTCCATCTTTACCCG

Coding sequence (CDS)

ATGTCCACCAGAACCCCCCGTTCTAGACGCTGCCCTCTTCCGTCTACCACCATCTCTGACCACCAGATTGCTGATTTAATCTCCAAATTACACCAACTCATCCCTCAGATTCGTAACCGACGTTCCTCCTCCTCCACGGTATCAGCTTCCAAGGTTCTACAAGAGACTTGCAACTTCATAAGAAGCTTAGAAAGAGAGGTGGATGACTTGAGCGAGCGACTATCAGAGCTATTGGCGTCCACAGACCCTGAAACTGCTCAGGCTGCCATACTTAGAAGCTTACTTATGTAA

Protein sequence

MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM

Homology

[Close]

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-22
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 2  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIR 61
          S R+ RSR+    S+ ISD QI+DL+SKL  LIP++R RRS    VSASKVLQETCN+IR
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRRRRSDK--VSASKVLQETCNYIR 62

Query: 62 SLEREVDDLSERLSELLASTDPETAQAAILRSLL 96
          +L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Sbjct: 63 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-20
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R  RSR+    S+ I+D QI+DL+SKL  L+P+ R R  S+  V +S+VLQETCN+I
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEARLR--SNDRVPSSRVLQETCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Sbjct: 61 RSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-20
Identity = 59/96 (61.46%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R  RSR+    S+ I+D QI+DL+SKL  L+P+ R R  S+  V +S+VLQETCN+I
Sbjct: 1  MSSRRSRSRQS--GSSRITDEQISDLVSKLQDLLPEARLR--SNDRVPSSRVLQETCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSL +EVDDLSERLSELLA++D  +AQAAI+RSLLM
Sbjct: 61 RSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot
Match: Q9LXG5 (Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 9.1e-20
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 7  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLERE 66
          R  R    S+ ISD QI DLISKL Q IP+IR  R  S+TVSASKVLQETCN+IR+L +E
Sbjct: 5  RRSRQASSSSRISDDQITDLISKLRQSIPEIRQNR-RSNTVSASKVLQETCNYIRNLNKE 64

Query: 67 VDDLSERLSELLASTDPETAQAAILRSLL 96
           DDLS+RL++LL S DP + QAA++RSL+
Sbjct: 65 ADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot
Match: Q9FLE9 (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-18
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18 ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSEL 77
          ISD+Q+ DL+SKL Q++P+I  RR S    SASKVLQETCN+IR+L REVD+LSERLS+L
Sbjct: 15 ISDNQMIDLVSKLRQILPEIGQRRRSDK-ASASKVLQETCNYIRNLNREVDNLSERLSQL 74

Query: 78 LASTDPETAQAAILRSLLM 97
          L S D ++ +AA++RSLLM
Sbjct: 75 LESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL
Match: A0A6J1GYM6 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111458692 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 96

[Close]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL
Match: A0A6J1JAV8 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111485123 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.9e-37
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR-SSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 95

[Close]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL
Match: A0A6J1DAM4 (transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 4.5e-30
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R+ RSRR P+PS  ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+I
Sbjct: 1  MSSRSSRSRRSPVPSRNISDDQIADLISKLQQLIPEIRNAR-SSSRVSASKVLQETCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSL+REVDDLSERLSELLASTDPE+AQAAI+RSLLM
Sbjct: 61 RSLQREVDDLSERLSELLASTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL
Match: A0A6J1HXN1 (transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.2e-28
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R+ RSRR  +PS+ ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+I
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNAR-SSSRVSASKVLQETCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Sbjct: 61 RSLQREVSDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL
Match: A0A6J1G268 (transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 9.4e-28
Identity = 75/96 (78.12%), Postives = 85/96 (88.54%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R+ RSRR  +PS+ ISD QIADLISKL QLIP+IRN R SSS VSASKVLQETCN+I
Sbjct: 1  MSSRSSRSRRSSVPSSNISDEQIADLISKLQQLIPEIRNAR-SSSRVSASKVLQETCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSL+REV DLS+RLSELL STDPE+AQAAI+RSLLM
Sbjct: 61 RSLQREVGDLSDRLSELLLSTDPESAQAAIIRSLLM 95

[Close]

BLAST of CmoCh04G017240 vs. NCBI nr
Match: XP_022957252.1 (transcription factor PRE6-like [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 96

[Close]

BLAST of CmoCh04G017240 vs. NCBI nr
Match: XP_023514693.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 3.8e-39
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MSTRTPRSRR PLPSTTISDHQIADLISKLH+LIPQIRNRRSSSSTVSASK+LQETCNFI
Sbjct: 1  MSTRTPRSRRSPLPSTTISDHQIADLISKLHRLIPQIRNRRSSSSTVSASKILQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 96

[Close]

BLAST of CmoCh04G017240 vs. NCBI nr
Match: KAG7032204.1 (Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRR---SSSSTVSASKVLQETC 60
          MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR   SSSSTVSASKVLQETC
Sbjct: 1  MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSSSSTVSASKVLQETC 60

Query: 61 NFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          NFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Sbjct: 61 NFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 99

[Close]

BLAST of CmoCh04G017240 vs. NCBI nr
Match: KAG6601421.1 (Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 9.3e-38
Identity = 94/100 (94.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNR----RSSSSTVSASKVLQET 60
           MSTRTPRSRR PLPSTTISDHQIADLISKLHQLIPQIRNR     SSSSTVSASKVLQET
Sbjct: 1   MSTRTPRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRPSSSSSSSSTVSASKVLQET 60

Query: 61  CNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
           CNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM
Sbjct: 61  CNFIRSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 100

[Close]

BLAST of CmoCh04G017240 vs. NCBI nr
Match: XP_022987627.1 (transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 164.1 bits (414), Expect = 6.0e-37
Identity = 92/96 (95.83%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MSTRT RSRR PLPSTTISDHQIADLISKLHQLIPQIRNRR SSSTVSASKVLQETCNFI
Sbjct: 1  MSTRTSRSRRSPLPSTTISDHQIADLISKLHQLIPQIRNRR-SSSTVSASKVLQETCNFI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          RSLEREVDDLSERLSELLASTDPE+AQAAILRSLLM
Sbjct: 61 RSLEREVDDLSERLSELLASTDPESAQAAILRSLLM 95

[Close]

BLAST of CmoCh04G017240 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-23
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 0


Query: 2  STRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIR 61
          S R+ RSR+    S+ ISD QI+DL+SKL  LIP++R RRS    VSASKVLQETCN+IR
Sbjct: 3  SRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRRRRSDK--VSASKVLQETCNYIR 62

Query: 62 SLEREVDDLSERLSELLASTDPETAQAAILRSLL 96
          +L REVDDLS+RLSELLASTD  +A+AAI+RSLL
Sbjct: 63 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of CmoCh04G017240 vs. TAIR 10
Match: AT5G15160.1 (BANQUO 2 )

HSP 1 Score: 97.4 bits (241), Expect = 6.5e-21
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 7  RSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLERE 66
          R  R    S+ ISD QI DLISKL Q IP+IR  R  S+TVSASKVLQETCN+IR+L +E
Sbjct: 5  RRSRQASSSSRISDDQITDLISKLRQSIPEIRQNR-RSNTVSASKVLQETCNYIRNLNKE 64

Query: 67 VDDLSERLSELLASTDPETAQAAILRSLL 96
           DDLS+RL++LL S DP + QAA++RSL+
Sbjct: 65 ADDLSDRLTQLLESIDPNSPQAAVIRSLI 92

[Close]

BLAST of CmoCh04G017240 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.1e-20
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 18 ISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFIRSLEREVDDLSERLSEL 77
          ISD+Q+ DL+SKL Q++P+I  RR S    SASKVLQETCN+IR+L REVD+LSERLS+L
Sbjct: 15 ISDNQMIDLVSKLRQILPEIGQRRRSDK-ASASKVLQETCNYIRNLNREVDNLSERLSQL 74

Query: 78 LASTDPETAQAAILRSLLM 97
          L S D ++ +AA++RSLLM
Sbjct: 75 LESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of CmoCh04G017240 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 93.6 bits (231), Expect = 9.3e-20
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS+R  RSR+    ++ I+D QI DL+ +LH+L+P++ N R S   VSAS+VLQETC++I
Sbjct: 1  MSSRKSRSRQ--TGASMITDEQINDLVLQLHRLLPELANNRRSGK-VSASRVLQETCSYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLLM 97
          R+L +EVDDLSERLS+LL STD  +AQAA++RSLLM
Sbjct: 61 RNLSKEVDDLSERLSQLLESTD--SAQAALIRSLLM 91

[Close]

BLAST of CmoCh04G017240 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-19
Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = 0


Query: 1  MSTRTPRSRRCPLPSTTISDHQIADLISKLHQLIPQIRNRRSSSSTVSASKVLQETCNFI 60
          MS R  RSR+    ++ IS+ QI DLI KL QL+P++R+ R S   VSA++VLQ+TCN+I
Sbjct: 1  MSGRRSRSRQSS-GTSRISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYI 60

Query: 61 RSLEREVDDLSERLSELLASTDPETAQAAILRSLL 96
          R+L REVDDLSERLSELLA++D  TAQAA++RSLL
Sbjct: 61 RNLHREVDDLSERLSELLANSD--TAQAALIRSLL 91

The following BLAST results are available for this feature:

BLAST of CmoCh04G017240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GW32	2.0e-22	67.02	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
B8APB5	2.4e-20	61.46	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	2.4e-20	61.46	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9LXG5	9.1e-20	61.80	Transcription factor PRE2 OS=Arabidopsis thaliana OX=3702 GN=PRE2 PE=1 SV=1	[more]
Q9FLE9	1.0e-18	63.29	Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1	[more]

BLAST of CmoCh04G017240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYM6	1.1e-41	100.00	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111458692 PE=...	[more]
A0A6J1JAV8	2.9e-37	95.83	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111485123 PE=4 ...	[more]
A0A6J1DAM4	4.5e-30	82.29	transcription factor PRE6-like OS=Momordica charantia OX=3673 GN=LOC111019204 PE...	[more]
A0A6J1HXN1	7.2e-28	78.13	transcription factor PRE6-like OS=Cucurbita maxima OX=3661 GN=LOC111467576 PE=4 ...	[more]
A0A6J1G268	9.4e-28	78.13	transcription factor PRE6-like OS=Cucurbita moschata OX=3662 GN=LOC111450010 PE=...	[more]

BLAST of CmoCh04G017240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957252.1	2.4e-41	100.00	transcription factor PRE6-like [Cucurbita moschata]	[more]
XP_023514693.1	3.8e-39	95.83	transcription factor PRE6-like [Cucurbita pepo subsp. pepo]	[more]
KAG7032204.1	1.4e-38	95.96	Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6601421.1	9.3e-38	94.00	Transcription factor PRE6, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022987627.1	6.0e-37	95.83	transcription factor PRE6-like [Cucurbita maxima]	[more]

BLAST of CmoCh04G017240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26945.1	1.4e-23	67.02	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G15160.1	6.5e-21	61.80	BANQUO 2	[more]
AT5G39860.1	7.1e-20	63.29	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	9.3e-20	58.33	BANQUO 3	[more]
AT1G74500.1	1.6e-19	61.05	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..80
None	No IPR available	PANTHER	PTHR46446:SF11	TRANSCRIPTION FACTOR PRE6	coord: 1..96
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 20..92 e-value: 2.1E-7 score: 33.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..85
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G017240.1	CmoCh04G017240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity