CmoCh04G014970 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G014970
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 7665280 .. 7666242 (+)
RNA-Seq ExpressionCmoCh04G014970
SyntenyCmoCh04G014970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAATCATGGAGTTGTGGACAAGGAGAGAGGAGAAAAAAGTTTCCGTAAGAATACAGGAAGATTTTTGCTTCTTCCGTCCACTTGACGGATTTTGAAAACATGTTTTATATTTGGTGGGCTTAAGATAGTGAATCACTGATCCTATTTTTCTTCTTCTTCTTCTTCTTTTTCTTTCACGAATGCTCCGGAAAATTGCTCGTGTTTGCGATCGTTTTCCTCTCTGAGCTGAGAAAGTTATTTCATCGTAAAACTCGGTGAGTTTCTACTTCTGTCTTCGATGATTTTGCTCAATTAACTCTCTGCGCAACTCACCGAATCTGGCTCCGAAGTTCCGTAACTTTCTTCTAACTAGTTTGCCGAATTTGAATTTACATTAGATTAATTCTATGATTTCTGTACAGAAATTTTTAGGCGATTATAATACAACTTTTGAGGTTGTTGTATTTGATTCTTGTATTCTTTCCGTGTTCATAGCATTTCTTGTCATGCTTTCGCTCGCTGTTCGAATCTAATCTCCATTGCCGAAGATGCTGTGGTTTGTTTAGTGTACAGATTATAGACTCAGTATTTCATCGACGGATTGTGAATCGTTTACTAGATATTAGCTAACCTTATCGAAGGAAGCAAGAATAAAAGTTCAGGTTTCCTGTTGGCATTTTTTCATATAACTAGGTTTTAGGATTCGGTGGAAGTGAAAAATCGTTCGATGTGTTGCGTTTAGACTTTCTAACCCTAAGTTTTCGTATTAGCTCAGCTATTTTCCTTATTCTTGGAGCAGGAAGTTAAAGAAATATATGCTATGTTACGATAAGCTTTCTAGGATGAGATTGATTCACTCGTTTGGAGTTCTATTTGTCCTGTAATCTAAACTTTGGTATGTTTCTATTGAATCATGAATCCGCTCAATCTCTCTTTGTGCAGATATATTTGTGTTCGTCGAGTGAAGCTGAAAAACTGA

mRNA sequence

ATGAAAAATCATGGAGTTGTGGACAAGGAGAGAGGAGAAAAAAGTTTCCATAGTGAATCACTGATCCTATTTTTCTTCTTCTTCTTCTTCTTTTTCTTTCACGAATGCTCCGGAAAATTGCTCGTGTTTGCGATCGTTTTCCTCTCTGAGCTGAGAAAGTTATTTCATCGTAAAACTCGATATATTTGTGTTCGTCGAGTGAAGCTGAAAAACTGA

Coding sequence (CDS)

ATGAAAAATCATGGAGTTGTGGACAAGGAGAGAGGAGAAAAAAGTTTCCATAGTGAATCACTGATCCTATTTTTCTTCTTCTTCTTCTTCTTTTTCTTTCACGAATGCTCCGGAAAATTGCTCGTGTTTGCGATCGTTTTCCTCTCTGAGCTGAGAAAGTTATTTCATCGTAAAACTCGATATATTTGTGTTCGTCGAGTGAAGCTGAAAAACTGA

Protein sequence

MKNHGVVDKERGEKSFHSESLILFFFFFFFFFFHECSGKLLVFAIVFLSELRKLFHRKTRYICVRRVKLKN
Homology
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BLAST of CmoCh04G014970 vs. NCBI nr
Match: KAG6601211.1 (hypothetical protein SDJN03_06444, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.1 bits (235), Expect = 2.5e-16
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0 

Query: 16  FHSESLILFFFFFFFFFFHECSGKLLVFAIVFLSELRKLFHRKTRYICVRRVKLKN 72
           F  ESLIL FFFFFFFFFHECSGKLLVFAIVFLSELRKLFHRKTRYICVRRVKLKN
Sbjct: 49  FTCESLIL-FFFFFFFFFHECSGKLLVFAIVFLSELRKLFHRKTRYICVRRVKLKN 103

The following BLAST results are available for this feature:
BLAST of CmoCh04G014970 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G014970 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G014970 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601211.12.5e-1694.64hypothetical protein SDJN03_06444, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmoCh04G014970 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014970.1CmoCh04G014970.1mRNA