CmoCh04G013920 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G013920
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Location	Cmo_Chr04: 7079597 .. 7082972 (+)
RNA-Seq Expression	CmoCh04G013920
Synteny	CmoCh04G013920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCTCTTATATATAAACCAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTCTCTCTTTCCTGCAATTTACTGTATTTTTTTCTTATTTTTTTGTCAATTTATATATGATTTGGGAGCGTCTTCGGGAGTTTTGTTGAATCCTTCATTTCCTTAAGTGGTGTGGATAAACTCTGGGGACGTCTTGTCTTTGTGTCTATTAGAGACGTCTGAGAAAGGATTTTTGAAGCTGTCTTTTCCATCAATTAGAAACGAAAGCTTTATAGAAATAGAAAAACGAATAAAGGTGTTTAGAGGGTTTATCTTTCTCGTTCTTGTCGTCGTTGTAAATCTATCATTCTGGAGAGTTATTTTTACCGAGTCAAATAGATATTGGTGTTCTGGCAGTTTTGCATTTGCAACGCAACCGGATGATTTCTCCCTCCTAAAGATTGGGCACATTAGATAGGGTTGAAAATGTGGATGAGTTGTGTTCTTCCGTACCTTCACGAAGTTTTTCGTGGATAATCAATTCAATCCGTTTTTCTTTTTGGGGGCTATTCCTTCTAATTCTGGGATCAATTTTCACGGTGTATGAGCTCTTTCAGTGCATTTGATGGTAGGATTCTTTGGACAAACAATCAATTGTTGACTTTTTGGGAGAATTTTTCTCAAAGGAGTTCATTGAAGATAGGCGTGCAAATACAAGTTTGAAAGACTCTAGGCCTAGAACTCATTTAATTGCTTCTTTCTGCTGCTGCAATCTTAAAAAAATGATCTCTTTTTTGGAGTCTTCGGTTAGAAAGAAACAAGAGAGTTGAATCTTTATTCTTTGGTCAATCAATTCCAGCTCTAATTTAGGTGCCTCTTTTTAAGTCCCTTGTGTATTGTCTCTGCTATATGTTCCATTTATCAATGCATTTTGTTATGATGCAAAAGTTTCATGATATTACCATAATCTTAAATTTTTTTGGTATGTGAGAGTATCTGATGAGTCGATAGATATGCTCTCTCTAAAAAAATTATTATTAACAGCCTAAGGGCAAGGGAGAAGAGAGAACCCCCTTCCACAAAAAACTAAAGGAAAGCTTTTCAATTGATTTGGACCATGGTTAGCTATAGTTACAAAAGATAATTGCTTGTACCTTTAATTACTAGATATAATTCATGCCTGTGCCTGCATTTTATCCATTTACTATTGTTTCATCTTTTCATCGAGTGCCGCCAATTTGTTTCCTCAAACCTTGTACTCCATGGGTTTATTGTCTTTCTTATGGTTACTATCTATTTATGATGGAACCTATTGTTTGGTGATCTACAGTTGCTGCCAGTTGAATGTTACTTGTAAATTTGTCATTTTTGTGCTATCATCTATGTGATGGAGACATTCTCTGTGTTCATTGCTTTAGAGGTGAGTTCAAATTATTTTATAAAGACAAAACGCCCGATTAGCAGTTTGACTCTTGACAATTGACCAATTTCCCTTGGATTTTTTGCTGGGGCCTCTTGATTTCCAAATGAAGCGTAGATGATTTTGAACATCAGAGGTTTCTAGAATATTGCACCCCGTTTGCTTACTACCACCTCTAGTAATTTAAGGTACAAGCATGTTTATTTGACAAACCCAAGGAATTAGTTTTAATATTGTGTTTCTTCTGTAAATCATTCCTTTGGTATTAACTACTTCACATCTCGAAGGCTGATCCAAACAACTTAAACCTTTTAGATACTTTGCTTCCATGGGAAATTTTAATAAACTTTGTTGGATTTTTTTTTTTTTTTCCTCCTTTTTTTTGGGGAAATCACTGTCTCTAGGCGATCCATGGCGGATCGCCAAGTGATTGTGAGGGAAAAAAAAGGAACTCCTCCAGTCGCTTCGCAATGGCAGAGTCTCATTTATGGCATGGTGTAGGGTCTAAATCTGTCAGAACTACAAGTTGTAGTTTATGTGTAGAAATCTCGCTGTGTGTGGTAAATTAAGTGTAACATGTTACAGAAGCCGCTTGGTAGTAGTGTCTTTCTAGGACTGTTATTAAGAAACTGCTGGTGAAGGTTAGAAACTTAGACCAATATTTTTTAGCGGAGGTGCTCCACTTATGGTGACGGGCAGGGTAGGTTTAGCCTCCTTTCATCCAGTGGTCTGACAATGTGAGCACTTCTGCATATCTGTGTGTGTAACCATTCGAAATGCCTCGACTTTTTTAAAACAAGTCCGAGTCGAATAGTAATGATTCAAAGCACCTATTTTTATACTATTTTGGAAATCCTTGGACTCAATCTTATGGATATGTAAAATATAGGATTTCTAATCCTAGCAAGAAAGGGAGGGAAACCGATACTCAATTTAAACTGAGTAAATAGAATTTCATACTCGATCTCATAGATACATATAGAAATGTGTGTGAGTGAGAGAGAGGGAGAGAGAGATAGTGGCTTCGATCAATTGATATCTGTTGTAGACCTCATGCCCCAAGTACGAAGCTTGCGGTGCACTTCGAAAATAATTTGCATTCGAGGAATGGAGGTTGTAGGTGAAGATTATTTTAATTTCTTAAGATTCTGTTCTTTACACGGTCTTGGAGTCGAACTGCGAATGTGAAGATTATTTTTACAGTTTCTGACTTTTCAAGTTTACAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGACCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTTACACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGAT

mRNA sequence

TTGCTCTTATATATAAACCAGGCGCGTGGGAGGCTGCGAGGAGTAGCGCGAACAGCAATAGCCGAACGAGTTCACTCATTGAGTTGGCGAAGGCAGAGAGAAGAACTCAGAAAAAATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGAACTCCATCCTTCCTTGAATATGAAACATCCATAGTTTTTATTTGTGATCTTGAGAAATAATGAAGAAACTATGTGTTCTCTGGACAATGAACACTCCTATTTGATCGTTTTGTTGGATTGAATTGTTGGTATGTTATGACCGCTGTATCTTTTACAGAAGCAAAGCAATCCAAGATCTTTGGTTCTATTTACACCGTTTTTAATTATCAAGCCCAAATGGTTGTCTACTCTAGCTTTAGTTCCAGTTGTCTTCGTTTTATCACTGGCATGTTTATAAGTTCTAATCATTATCAAGAT

Coding sequence (CDS)

ATGGCGTTCACAGTTCGAGGTCTGAAGGTTCCGCCCAACTCCGCCAGTCTGGAAGAAGCCCGGAATCGAGTCTTCGACTTCTTCAGATCAGCATGTAGATCCTTGCCTGCAATCATGAACATCTATAACTTAGACGATGTCACTACTACTTCTCAGATCCGCTCTACCATCGCCTCCGAGATCCGCAAGAATTCCCACGTTACGGACCCTAAGGTGATTGACATGCTTCTTTTCAAGGGCATGGAAGAGCTCGGTAACATTACCGAACATGCAAAGCAACGGCATCACATCATTGGTCAGTATGTGGTTGGTCGCGAAGGACTCGTGCAAGATGTGGGTTCCAAGGATCAGGGCATATCCAATTTTCTCAAAAACTTCTACAAGAGTAACTACTTTTGA

Protein sequence

MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNFLKNFYKSNYF

Homology

[Close]

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot
Match: Q9LHI0 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=At3g12260 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.7e-48
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

[Close]

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot
Match: Q02366 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=9913 GN=NDUFA6 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 30/88 (34.09%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++++ LD   +  Q R  +    +KN+H+TDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLD--ISVKQGRDKVREMFKKNAHITDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKMELEETIKVWKQRTHVM 104

[Close]

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot
Match: Q9CQZ5 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=10090 GN=Ndufa6 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-09
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  L EA+ RV + +R+  R +P  +++  LD   T  Q R  +     KN+HVTDP
Sbjct: 22  PIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLD--ITVKQGRDKVREMFMKNAHVTDP 81

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 82  RVVDLLVIKGKMELQETIKVWKQRTHVM 107

[Close]

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot
Match: Q0MQA4 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFA6 PE=2 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-08
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot
Match: P56556 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=9606 GN=NDUFA6 PE=1 SV=4)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-08
Identity = 31/88 (35.23%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 11  PPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIRKNSHVTDP 70
           P  S  + EA+ RV + +R+  R +P  ++ + LD   T    R  +     KN+HVTDP
Sbjct: 19  PIFSRDMNEAKRRVRELYRAWYREVPNTVHQFQLD--ITVKMGRDKVREMFMKNAHVTDP 78

Query: 71  KVIDMLLFKGMEELGNITEHAKQRHHII 99
           +V+D+L+ KG  EL    +  KQR H++
Sbjct: 79  RVVDLLVIKGKIELEETIKVWKQRTHVM 104

[Close]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL
Match: A0A6J1H232 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111458871 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.5e-68
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL
Match: A0A6J1JDJ2 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima OX=3661 GN=LOC111483420 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT S IRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL
Match: A0A1S3BH79 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489526 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.8e-65
Identity = 125/132 (94.70%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD G+KDQG+S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDFGAKDQGMS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFY+SNYF
Sbjct: 121 NFLKNFYRSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL
Match: A0A0A0KRV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.2e-62
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEAR+RVFDFFRSACRSLPAIM+IYNLDDV T SQ+RS IASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARSRVFDFFRSACRSLPAIMDIYNLDDVATVSQLRSAIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYV+GREGLVQD G+KDQG S
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVLGREGLVQDFGAKDQGRS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL
Match: A0A6J1CBT6 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010212 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.0e-61
Identity = 117/132 (88.64%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFT R LKVPPNSASLEEARNRVFDFFRSACRSLP IM+IYNLDDV T SQ+RS++AS+
Sbjct: 1   MAFTARALKVPPNSASLEEARNRVFDFFRSACRSLPTIMDIYNLDDVATISQLRSSVASQ 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSH+ DPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVG EGLVQD+G+KDQGIS
Sbjct: 61  IRKNSHINDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGSEGLVQDLGTKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: XP_022957489.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: KAG6601118.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031916.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.6 bits (675), Expect = 4.5e-67
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT+SQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTSSQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: XP_023552714.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 130/132 (98.48%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQIRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTISQIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: XP_022985413.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 130/132 (98.48%), Postives = 130/132 (98.48%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTT S IRSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTISHIRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. NCBI nr
Match: XP_038892169.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 127/132 (96.21%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASE 60
           MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIM+IYNLDDVTT SQ+RSTIASE
Sbjct: 1   MAFTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMDIYNLDDVTTVSQLRSTIASE 60

Query: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGIS 120
           IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQD+G+KDQGIS
Sbjct: 61  IRKNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDLGAKDQGIS 120

Query: 121 NFLKNFYKSNYF 133
           NFLKNFYKSNYF
Sbjct: 121 NFLKNFYKSNYF 132

[Close]

BLAST of CmoCh04G013920 vs. TAIR 10
Match: AT3G12260.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-49
Identity = 91/130 (70.00%), Postives = 111/130 (85.38%), Query Frame = 0


Query: 3   FTVRGLKVPPNSASLEEARNRVFDFFRSACRSLPAIMNIYNLDDVTTTSQIRSTIASEIR 62
           F +R + VPPNSA+L EAR RVFDFFR+ACRS+P IM+IYNL DV   SQ+R  I+++IR
Sbjct: 5   FALRKIGVPPNSANLTEARRRVFDFFRAACRSIPTIMDIYNLQDVVAPSQLRYAISAQIR 64

Query: 63  KNSHVTDPKVIDMLLFKGMEELGNITEHAKQRHHIIGQYVVGREGLVQDVGSKDQGISNF 122
            N+H+TDPKVID+L+FKGMEEL +I +HAKQRHHIIGQYVVG EGLVQ+ G+KDQG ++F
Sbjct: 65  NNAHITDPKVIDLLIFKGMEELTDIVDHAKQRHHIIGQYVVG-EGLVQNTGNKDQGKTDF 124

Query: 123 LKNFYKSNYF 133
           LKNFY SNYF
Sbjct: 125 LKNFYTSNYF 133

The following BLAST results are available for this feature:

BLAST of CmoCh04G013920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHI0	3.7e-48	70.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Arabidopsis thal...	[more]
Q02366	7.6e-09	34.09	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Bos taurus OX=99...	[more]
Q9CQZ5	7.6e-09	37.50	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Mus musculus OX=...	[more]
Q0MQA4	8.4e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Gorilla gorilla ...	[more]
P56556	8.4e-08	35.23	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Homo sapiens OX=...	[more]

BLAST of CmoCh04G013920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H232	7.5e-68	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita moscha...	[more]
A0A6J1JDJ2	1.4e-66	98.48	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucurbita maxima...	[more]
A0A1S3BH79	7.8e-65	94.70	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Cucumis melo OX=...	[more]
A0A0A0KRV0	1.2e-62	92.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G624440 PE=3 SV=1	[more]
A0A6J1CBT6	4.0e-61	88.64	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Momordica charan...	[more]

BLAST of CmoCh04G013920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957489.1	1.6e-67	100.00	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita moschata...	[more]
KAG6601118.1	4.5e-67	99.24	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6, partial [Cucurbita...	[more]
XP_023552714.1	2.9e-66	98.48	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita pepo sub...	[more]
XP_022985413.1	2.9e-66	98.48	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Cucurbita maxima]	[more]
XP_038892169.1	1.9e-65	96.21	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Benincasa hispida]	[more]

BLAST of CmoCh04G013920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12260.1	2.7e-49	70.00	LYR family of Fe/S cluster biogenesis protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 45..84 e-value: 2.0E-5 score: 24.5
IPR016488	NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 6	PANTHER	PTHR12964	NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT	coord: 1..132
None	No IPR available	PANTHER	PTHR12964:SF4	NADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX SUBUNIT 6-LIKE	coord: 1..132
None	No IPR available	CDD	cd20266	Complex1_LYR_NDUFA6_LYRM6	coord: 17..93 e-value: 2.01007E-32 score: 107.649

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G013920.1	CmoCh04G013920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0005747	mitochondrial respiratory chain complex I