CmoCh04G013470 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G013470
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionProtein of unknown function (DUF3531)
LocationCmo_Chr04: 6865940 .. 6869517 (+)
RNA-Seq ExpressionCmoCh04G013470
SyntenyCmoCh04G013470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGGTATATCGGTCTAGCATATATTCATCTTCTTCATTTGATTTTTTTATTATCGATTTGTTGTAATTATACTTGCTCATTCACTACGTCATTTCTTGTTTGCACTTGTCTTATTGTGTCAGTTTTTAGAACGTATTGTTCAGATTTTTTTTCACTTCGGTTTGAGAGACGAGAAACCTTAACAAAATGCTTGAAACTAGATTGTAGCATATTCGCAATTTAGGATTTAGTGTTTCCTTGATATATTCTTAATTCGTCGGTATGACGTCTGAGAAGATAAGATTCGCCTTATTATTTTCTCTCATTAACAAGCATCGAGTAGGATTGTCGTTATGTATCTTGTTGATATAGTTGATTATGGTGCATACTGTCGTGCATGGATGTGTCATATCATGGAAACTTGAAAAGTGCTAGGTAGCATTCTCAACTCAAGAAGGAGCAATTTCTGGATGATTGACGGAACTATTTTATTAGTTGTCGTTTCATAAGCCGCTCATTTCACTTCTATTTAAGTATTGTCTCTTCAAAACATTTTGCTGAAGATCTCATATGACTAGTAATTCGTACAGAACTATCTTGTAAATAAACTTATTTCACATCTATTGTCAAGCCCAAGCCGTTAACTTCTTATTAGAGTATTAAAACCTGTTAAGTCTCATGCAGTGAACATTGATTGCGTTCCCGTAGAACTGATGAGCGGAATAAGCTTCTTTCTGTGAGGCATTAACCAGAAGAGTAAAAACTTCTAAAACTTTTCATGCAATTCCTGTTAAATAATGGTGTTTCCTTTTCTTTGTACATAATTACATCCTCCAATTTGATTGAGGCAGGTTGAAGAGAGTTCGGAGGAAGGTTAGAGATTTCCAAAAAACAGGTTTCATCCATGTTAGAGAGTAATCTATTTAACAAATAGCCCCTTGTTTACTGTCCTTTTTTGTCCCCACTGGTATAACCTTATTTCTGGTGCCAACGTCAAAGCTTAAGCCTCCATCATAAAAGAAAAGATTTTATCCCCATTTCCAATTCCATTTTTCCAGCCATCGACCACTACTCTTTAAATTGATTTCATTCTTCTCAACTTCTCAGGTTTCAAATTTGTTTTGAAGCAAACGTTTAAGGCCCAAAAGGTTTCGGGTCCTGGGTTCTATTAGTCCAGCAAGTTCTCTTTTAAAGCAGCTGTATCTCAAGTAAATACGTTTTTCTTATGGCTTCCACACATGATAGAATTTAGTTCCAACTTTGGGTTTCCCAAATGTGCAAGTCATCAATTTTTTGATTGTATTCTTTTACATTCTTTTGATACGTTGAAGAATGATCGCATATTGTTACTGCTTTACGGGCAATACCATGGTTATAGATGCTTTTCTTGTCTTCTGAGCTAATTTGGGGATGGGAATATGCATTCTGGTTGTTTATTTATATGCTCATGAGTGTACTAGTTAACTAGATGACGTATATTGATGGAGGTTGGTCATAATTTAAATGTTAAAACATGATAAATTTCTATGTCAATGACTATATAATCACTTAAAACCTCATACATTAAGTTTTTTTTTTTTTCCTTTTTTTTTGGGGTAAATTTGGTAGTAGTCCAGTGCAGAACTGCACTATCCCAGGACACAGTAATATTGGAGTTCTGCTATACATTTGTTGACATCTTTGAGCATCCTGGTCCTCGTTTCTTGATTAGCTGATTTTTAAATTTAACCATTGTTTTTTATGCACTTACATTTCATGCCTGTTCGCTGCATGTCTTGGAAATTGTTCAGTCATCCTAATGAAACATGAGGAAGAGTAAACCCCGTAGTCACATATTACTAAGCTGCTAATTAAGAGAAAATTGTTCATATTATCATCAATGTGGTGACAAATTGTTCATTAACTTTTTCAGACGTTTGAACATTACCATTTTAAGTTACTGACCATCCTTTTGCCTCTGTTTTTCCGTACAGCTTCAATCCTCTTGGTTCCTACATATGTTTGAGCTGATTGGATCACCATCCGATTGAGATGTTGATCTTATTGGCAGAGTATGTTAGTTCTTATTGCCTTAGAATGATTTTCCCTGTCAATTATTATTTTCCTTGAGCTGCTTAAACTTTATAATGATCATCTTCTATTTTCCCCCATTCTCTTGCATCCATGAAGGACTTTTAACTTGTAGCCTATATTACTTACATTACAAGTAAACATGTAGGTTATCCAGTCCTGGTATGTCATTGGTCGATTGGAGGACTTTTAACTCTTCAAATTTGTAGGTTCTTCATACATCTTTGAACCTAATTAATTTATACTTCGTTAGAGTGCCTTACCTTAATTATTTGAAGTCAATAACATGTTTTTTTTTTCACCTCTTACGCAAATACAAATTAATTCTTCAGTTATTTTCTTTACTTGTGTATTGATATTTTGTCTTGTGGGGATAATATTTACATGATGAACGTACTGCATAACTACTAAATTATCTTGTTAGCTTTATATGGTTGAAAGTAGGCACCCTAGTTTGGAGGTACTCTGGATCACAGGCTCAGACTATTGTAAAACTGAACTTTGGTCAATGTTAAAAACGCTTACTTTTATTTTGGGCAAAGGAAAAACACGTTCAATTGCAAATTGATTTGGTTTATTCGAAGGCTGTTTAAATATCCTACAAACGTTATATTCTCTACATTTTTTTGGCTGATTCCCAAAAGATAGGGACGGCAAAACCAACCCGGTTAGGTGGTCAGTCTCTAACACCTTTTCTTAATGACTTAATGGGACCAAATCTATGGCTGCTGCGTGAATTGCAAAATTTTTGGATTAAATTTTTTTCATTGAATTGTTACTCAAACTAAAACAACAAATAATTGCAGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGGTTTGGTAAGACTTCTTGAAATTAACTGTGTTCCATTATTCGACGTTAATTTGTATGCTTCTCTGCATGGAATTCAAACAAGTTGTGATAATTTATGGCAGGGTTGACCTAGGTACGTCTGATTATTTCGCCATTGATGTACTATTGAACTGCTGGACTGTTCTGAGCTCATAGTAGGTACTCATCCTATCTAATTGAGGAACTTGTTATTTTTTACTTTGACACGCAGATATTTAGCCATCCAGTAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCTATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGAATAGTAGGAAGTTTTTAGGCTTAGATCAGGTAGTTTGAGAATTTTGCATTCAGAAAATAAAAAAATGGCCCACACGCTCTTCTCCTTTAGGAAAGGTAATACCAATTAGACGTGAGAATCTTGGAG

mRNA sequence

ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGGTTTCAAATTTGTTTTGAAGCAAACGTTTAAGGCCCAAAAGGTTTCGGGTCCTGGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGATATTTAGCCATCCAGTAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAGAATCTTGGTGTATTTAATGCCTCCTCTATATCCTAAATCTTCATCTTTATTTAAACTTCCGCCAGAATAGTAGGAAGTTTTTAGGCTTAGATCAGGTAGTTTGAGAATTTTGCATTCAGAAAATAAAAAAATGGCCCACACGCTCTTCTCCTTTAGGAAAGGTAATACCAATTAGACGTGAGAATCTTGGAG

Coding sequence (CDS)

ATGCCTGCAAAAACGAGGCGGAATTTCGCGCTGTTCCTAGCGATAGCATCGGCAATCAGAGGCAATGAGGAACAAGGTTTCAAATTTGTTTTGAAGCAAACGTTTAAGGCCCAAAAGGTTTCGGGTCCTGGCTGGCGAATTCAGCCATGGAGTGCAATTCCTCTCTATAATGCAGATAAAGGGTTTGAAGTGATGCCGCCATCATTTCATGATATCAGTGATGTAGAGTTTCAGGATAACTGGGGCCGGATATTTAGCCATCCAGTAAGTCATCTTTGGAGGACGTCGTATGAGCGATTGGGAAGAAGGGATGGCAAGCCCCGAGAATGGTACAAGTATTTCAAAATCTTTCTTCTTTAG

Protein sequence

MPAKTRRNFALFLAIASAIRGNEEQGFKFVLKQTFKAQKVSGPGWRIQPWSAIPLYNADKGFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDGKPREWYKYFKIFLL
Homology
[Close]
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match: A0A4S8J6P2 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t00090 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-09
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDGKPREW 111
           PLY++DK  + M  SFHDI DVEFQDNWGRI  +P S +   +Y RLGR   + R W
Sbjct: 175 PLYDSDKAVQSMSSSFHDIGDVEFQDNWGRILGYPTSGIRWATYGRLGRGHDERRVW 231

[Close]
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match: A0A6A2XS23 (Alpha-galactosidase-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111835pilonHSYRG00117 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-09
Identity = 40/70 (57.14%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDG-------K 113
           PLY+ADKGF VMP SFHDISDVEFQDNWGR     V +L        GRR G        
Sbjct: 229 PLYDADKGFNVMPSSFHDISDVEFQDNWGR-----VCYLGIQQIVFGGRRMGDWEEGMTN 288

Query: 114 PREWYKYFKI 117
           P   YKYFKI
Sbjct: 289 PDYGYKYFKI 293

[Close]
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match: A0A068V8Y6 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018256001 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+ADKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 172 PLYDADKGFKVMPSSFHDISDVEFQDNWGRIW 203

[Close]
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match: A0A1R3HP61 (Alpha-galactosidase OS=Corchorus capsularis OX=210143 GN=CCACVL1_17918 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+ADKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 668 PLYDADKGFKVMPSSFHDISDVEFQDNWGRIW 699

[Close]
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match: A0A1J7I464 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_31170 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.0e-08
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+ADKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 199 PLYDADKGFKVMPSSFHDISDVEFQDNWGRIW 230

[Close]
BLAST of CmoCh04G013470 vs. NCBI nr
Match: KAG7031883.1 (hypothetical protein SDJN02_05924, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.3e-38
Identity = 85/119 (71.43%), Postives = 86/119 (72.27%), Query Frame = 0 

Query: 1   MPAKTRRNFALFLAIASAIRGNEEQGFKFVLKQTFKAQKVSGPGWRIQPWSAIPLYNADK 60
           MPAKTRRNFALFLAIASAIRGNEEQ                                 DK
Sbjct: 1   MPAKTRRNFALFLAIASAIRGNEEQ---------------------------------DK 60

Query: 61  GFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDGKPREWYKYFKIFLL 120
           GFEVMPPSFHDISDVEFQDNWGRIFSHP+SHLWRTSYERLGRRDGKPREWYKYFKIFLL
Sbjct: 61  GFEVMPPSFHDISDVEFQDNWGRIFSHPISHLWRTSYERLGRRDGKPREWYKYFKIFLL 86

[Close]
BLAST of CmoCh04G013470 vs. NCBI nr
Match: KAG6601077.1 (hypothetical protein SDJN03_06310, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-15
Identity = 50/85 (58.82%), Postives = 52/85 (61.18%), Query Frame = 0 

Query: 1   MPAKTRRNFALFLAIASAIRGNEEQGFKFVLKQTFKAQKVSGPGWRIQPWSAIPLYNADK 60
           MPAKTRRNFALFLAIASAIRGNEEQ                                 DK
Sbjct: 62  MPAKTRRNFALFLAIASAIRGNEEQ---------------------------------DK 113

Query: 61  GFEVMPPSFHDISDVEFQDNWGRIF 86
           GFEVMPPSFHDISDVEFQDNWGR++
Sbjct: 122 GFEVMPPSFHDISDVEFQDNWGRVW 113

[Close]
BLAST of CmoCh04G013470 vs. NCBI nr
Match: THU57115.1 (hypothetical protein C4D60_Mb03t00090 [Musa balbisiana])

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-09
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDGKPREW 111
           PLY++DK  + M  SFHDI DVEFQDNWGRI  +P S +   +Y RLGR   + R W
Sbjct: 175 PLYDSDKAVQSMSSSFHDIGDVEFQDNWGRILGYPTSGIRWATYGRLGRGHDERRVW 231

[Close]
BLAST of CmoCh04G013470 vs. NCBI nr
Match: KAE8672670.1 (alpha-galactosidase-like [Hibiscus syriacus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-08
Identity = 40/70 (57.14%), Postives = 42/70 (60.00%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIFSHPVSHLWRTSYERLGRRDG-------K 113
           PLY+ADKGF VMP SFHDISDVEFQDNWGR     V +L        GRR G        
Sbjct: 229 PLYDADKGFNVMPSSFHDISDVEFQDNWGR-----VCYLGIQQIVFGGRRMGDWEEGMTN 288

Query: 114 PREWYKYFKI 117
           P   YKYFKI
Sbjct: 289 PDYGYKYFKI 293

[Close]
BLAST of CmoCh04G013470 vs. NCBI nr
Match: XP_019450058.1 (PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW07611.1 hypothetical protein TanjilG_31170 [Lupinus angustifolius])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 28/32 (87.50%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+ADKGF+VMP SFHDISDVEFQDNWGRI+
Sbjct: 199 PLYDADKGFKVMPSSFHDISDVEFQDNWGRIW 230

[Close]
BLAST of CmoCh04G013470 vs. TAIR 10
Match: AT5G08400.1 (Protein of unknown function (DUF3531) )

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-11
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+A+KGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 245 PLYDAEKGFKVMPSSFHDISDVEFQDNWGRVW 276

[Close]
BLAST of CmoCh04G013470 vs. TAIR 10
Match: AT5G08400.2 (Protein of unknown function (DUF3531) )

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-11
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0 

Query: 54  PLYNADKGFEVMPPSFHDISDVEFQDNWGRIF 86
           PLY+A+KGF+VMP SFHDISDVEFQDNWGR++
Sbjct: 212 PLYDAEKGFKVMPSSFHDISDVEFQDNWGRVW 243

The following BLAST results are available for this feature:
BLAST of CmoCh04G013470 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G013470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4S8J6P24.2e-0954.39Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t00090 PE=4 SV=... [more]
A0A6A2XS239.3e-0957.14Alpha-galactosidase-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111835pilo... [more]
A0A068V8Y66.0e-0887.50Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00018256001 PE=4 ... [more]
A0A1R3HP616.0e-0887.50Alpha-galactosidase OS=Corchorus capsularis OX=210143 GN=CCACVL1_17918 PE=3 SV=1[more]
A0A1J7I4646.0e-0887.50Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_31170 PE=4 S... [more]
BLAST of CmoCh04G013470 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031883.12.3e-3871.43hypothetical protein SDJN02_05924, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601077.13.6e-1558.82hypothetical protein SDJN03_06310, partial [Cucurbita argyrosperma subsp. sorori... [more]
THU57115.18.6e-0954.39hypothetical protein C4D60_Mb03t00090 [Musa balbisiana][more]
KAE8672670.11.9e-0857.14alpha-galactosidase-like [Hibiscus syriacus][more]
XP_019450058.11.2e-0787.50PREDICTED: uncharacterized protein LOC109352505 [Lupinus angustifolius] >OIW0761... [more]
BLAST of CmoCh04G013470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G08400.14.4e-1181.25Protein of unknown function (DUF3531) [more]
AT5G08400.24.4e-1181.25Protein of unknown function (DUF3531) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46737OS02G0827600 PROTEINcoord: 54..85
NoneNo IPR availablePANTHERPTHR46737:SF4BNAANNG06110D PROTEINcoord: 54..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G013470.1CmoCh04G013470.1mRNA