CmoCh04G012730 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh04G012730
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr04: 6457493 .. 6458060 (-)
RNA-Seq ExpressionCmoCh04G012730
SyntenyCmoCh04G012730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAACGTACGTAAGCCTTATGAAATGGAGAGCCATTCGGTTCTGCTGTACACGTGTACGGTAGATTACAAGATTGTAAAGTTATATAGTAGAACCGCGTCGTATAGGATCATTCGCTATAGTAAAAATACCAAAGCTCAGATTCTGTCGCTATCCAGTAGTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGTGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGGTCAGCTCACTGAGAATCTATGATAGTTGTGAAATTTCGGAGGTTTCAGTCTCCCATTGTTGGTTTCTTTGATTTTGATCGGTATTGAATTGCTTGTGCATTTCTGAATCTTCTTTTGTGTGTTTCGGAATTTATTTTGATCGTGATTAGCTCTGATCGGCGTTCGATTTTTGGTTGCTCTATGAGTTTTGATTTTTGGTTGTTTGTGTACAGATTGATTTTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

mRNA sequence

ATGGTATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAACGTACTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGTGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGATTGATTTTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

Coding sequence (CDS)

ATGGTATACAGTATCAGGCTCGATTTCCCGTACGAATTTTACCAGAACGTACTCCCTCGGAAGTCCCTTTCTATTTCTTCTCACCCAGAGGAACATCGCGTGTTCCAACCTCCCCGGCAATTTCTCCGGCGAAGATTGATTTTCGAAATCTTTGAGGTTTGCGCTTTCCGTGGTTCTTTGTTGTGTTTTTCATCGGTAACTTGA

Protein sequence

MVYSIRLDFPYEFYQNVLPRKSLSISSHPEEHRVFQPPRQFLRRRLIFEIFEVCAFRGSLLCFSSVT
Homology
[Close]
BLAST of CmoCh04G012730 vs. ExPASy TrEMBL
Match: A0A0A0KNV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.5e-05
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 5  IRLDFPYEFYQNVLPRKSLSISSHPEEHR---VFQPPRQFLRRRLIFEI-FEVCAFRGSL 64
          +RLD+     +N++P KSLS+SSH    R     +P  +FLRRRLI EI F+VC F GS 
Sbjct: 12 VRLDYEI-VNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIFFQVCDFGGSF 71

Query: 65 LCFSSVT 68
          LCFSS+T
Sbjct: 72 LCFSSLT 77

[Close]
BLAST of CmoCh04G012730 vs. NCBI nr
Match: KGN50534.1 (hypothetical protein Csa_000622 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 7.3e-05
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0 

Query: 5  IRLDFPYEFYQNVLPRKSLSISSHPEEHR---VFQPPRQFLRRRLIFEI-FEVCAFRGSL 64
          +RLD+     +N++P KSLS+SSH    R     +P  +FLRRRLI EI F+VC F GS 
Sbjct: 12 VRLDYEI-VNRNLVPPKSLSLSSHITTERNIACSKPTGKFLRRRLILEIFFQVCDFGGSF 71

Query: 65 LCFSSVT 68
          LCFSS+T
Sbjct: 72 LCFSSLT 77

The following BLAST results are available for this feature:
BLAST of CmoCh04G012730 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh04G012730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNV03.5e-0552.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G181170 PE=4 SV=1[more]
BLAST of CmoCh04G012730 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50534.17.3e-0552.24hypothetical protein Csa_000622 [Cucumis sativus][more]
BLAST of CmoCh04G012730 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G012730.1CmoCh04G012730.1mRNA