CmoCh04G012400 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G012400
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	LOB domain-containing protein
Location	Cmo_Chr04: 6297067 .. 6297787 (-)
RNA-Seq Expression	CmoCh04G012400
Synteny	CmoCh04G012400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCGGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTTGCGTTGCAGCAAGAGGTTGTTTTCAAACCTCTAAACATTTAAACACCTCATGGGTTTTTAAAATGTTTTTAAAATCTTTCTGATGCAGGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCGAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTGAGACATCAGGCTTTGATGTTTCAGTTGAGGAGAATTTTGGTGGCTATCCATGGATACTTGGATGA

mRNA sequence

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCGGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTTGCGTTGCAGCAAGAGGTTGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCGAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTGAGACATCAGGCTTTGATGTTTCAGTTGAGGAGAATTTTGGTGGCTATCCATGGATACTTGGATGA

Coding sequence (CDS)

ATGACTGTACTTAACTCTTATGATTCTTCTTCTTCTTCCTCTTCCTCTTCTTGTGGTGCCTGCAAGTTTCTAAGGCGAAAATGCAGCGATCAATGTGTATTTGCTCCTTTGTTCAGCTATGATGAAGCCACTTCCCATTTTGCGGCTGTTCATAAAGTGTTTGGAGCTAGTAATGTGTCCAAGCTTCTGTTGCATCTCCCCATGCATGTCCGAACCCAGGCTGCTATTACCGTCACTTATGAAGCTCTTGAGCGCATGCGAGATCCCGCCAATGGCTGCGTCTTGCATATCTTTGCGTTGCAGCAAGAGGTTGTGGCCAGCTTGCAGGAGGAGATACAAATTCTGGGGACCCAAATAGCCAACCTCCTCACCACCGGCGCCGCCATTTCAGCAGTGGAGAATCCATTTATAGAGATGAATGATTTTGGGATGAACTCAAACCATTGTCAAAATGAGCTGCCTTCTCAGCTGCTTCCCTACCGAACTTCTGATGATGTCCAAAAGGATGATCAAATGATATCTCCATTGCTTTGTTTAGGGGAAAAAGATGGAGGCTTTGGGTTCTGCCACTCAAATCATGTTGTTGAGACATCAGGCTTTGATGTTTCAGTTGAGGAGAATTTTGGTGGCTATCCATGGATACTTGGATGA

Protein sequence

MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG

Homology

[Close]

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9LHS8 (LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  TQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIAN 122
             AAIT++YEAL RMRDP  GCV HIFAL Q+VV +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVV-TLQEEIEFLGSQMKN 110

[Close]

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-33
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 69  HVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAA 128
             R +AAIT++YEA  R++DP  GCV HIFALQQ+VV +LQ E++IL  Q A  +    +
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVV-NLQAELEILKQQAAQSMIFADS 122

Query: 129 ISAVENP 136
            ++ ENP
Sbjct: 123 PTS-ENP 127

[Close]

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-30
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANL 123
           H R+ A +T+ YEA  R+RDP  GCV HIFALQQ+VV +LQ E+  L   +A+L
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVV-NLQAEVSYLQAHLASL 141

[Close]

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-30
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 5   NSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLL 64
           +S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 65  HLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLT 124
           ++P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+ VA LQ ++  +  QIA   T
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQ-VAFLQSQVMQMKAQIAGHQT 122

Query: 125 TGA 128
           + A
Sbjct: 123 SAA 124

[Close]

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-30
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  TQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAISA 131
            +AA T+ YEA  R +DP  GCV HIF+LQQ+VV +LQ +++IL  Q         ++ A
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVV-NLQTQLEILKQQATQ------SMMA 121

Query: 132 VENPFIEMNDFGMNSNHCQNELPSQL 158
           +++P IE      N N+ Q+  P  L
Sbjct: 122 IDSPSIE------NPNYYQDTKPQYL 134

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BLAST of CmoCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1H1E9 (LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458694 PE=3 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 8.4e-117
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 60
           MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIA 120
           KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE VASLQEEIQILGTQIA
Sbjct: 61  KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE-VASLQEEIQILGTQIA 120

Query: 121 NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG 180
           NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG
Sbjct: 121 NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG 180

Query: 181 EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG
Sbjct: 181 EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of CmoCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1L156 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111498911 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 8.4e-109
Identity = 204/219 (93.15%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+D   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGT 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQE VASLQEEIQILGT
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQE-VASLQEEIQILGT 120

Query: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLL 180
           QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+T DD QKDD MISPLL
Sbjct: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLL 180

Query: 181 CLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           CLGEKDGGFGFCHSNHVV TSGF VSV+ENFGGYPWILG
Sbjct: 181 CLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of CmoCh04G012400 vs. ExPASy TrEMBL
Match: A0A0A0KNX8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 2.2e-77
Identity = 159/218 (72.94%), Postives = 183/218 (83.94%), Query Frame = 0


Query: 10  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 69
           +SS+SS+SCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSNSSTSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 70  VRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAI 129
           +R+ AAITV YEALERMRDP  GCV HIFALQQE VASLQEEI+ILG+QIAN  TTG +I
Sbjct: 65  IRSHAAITVAYEALERMRDPTYGCVAHIFALQQE-VASLQEEIEILGSQIANFATTGGSI 124

Query: 130 SAVENPFI-------EMNDFG-MNSNHCQNELPSQLLPYRTSDDVQKDD---QMISPLLC 189
           +AV+NPFI       +M+ FG MN+N+ QNEL S+ LPY++ D+VQ D+   QMISPL C
Sbjct: 125 AAVDNPFIDQVQVPQQMDGFGMMNTNYYQNELVSE-LPYQSFDNVQNDNTTAQMISPLFC 184

Query: 190 LGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           LGE+DG F F +SN+VVE+S FDVSVEEN  GYPWI+G
Sbjct: 185 LGEEDGVFEFSNSNNVVESSAFDVSVEENCIGYPWIVG 220

[Close]

BLAST of CmoCh04G012400 vs. ExPASy TrEMBL
Match: A0A1S3CGM1 (LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.8e-77
Identity = 160/219 (73.06%), Postives = 183/219 (83.56%), Query Frame = 0


Query: 10  SSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMH 69
           +SS++SSSCGACKFLRRKCSDQCVFAP FSYDEATSHFAAVHKVFGASNVSKLLLHLP H
Sbjct: 5   NSSTTSSSCGACKFLRRKCSDQCVFAPFFSYDEATSHFAAVHKVFGASNVSKLLLHLPTH 64

Query: 70  VRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAI 129
            R+ AAITV YEALERMRDP  GC+ HIFALQQEVV SLQEEI+ILG+QIANL TTG +I
Sbjct: 65  TRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVV-SLQEEIEILGSQIANLATTGGSI 124

Query: 130 SAVENPFI--------EMNDFGM-NSNHCQNELPSQLLPYRTSDDVQKDD--QMISPLLC 189
           +AVENPFI        +M+ F M N+N+ QNEL S+ LPY++ D++Q D+  QMISPL C
Sbjct: 125 AAVENPFIDQVVQVSQQMDGFEMTNTNYYQNELASE-LPYQSFDNIQNDNTAQMISPLFC 184

Query: 190 LGEKDGGFGFCHSNHVVE-TSGFDVSVEENFGGYPWILG 217
           LGE+DG F FC+SN+VVE TS FDVSVEEN  GYPWI+G
Sbjct: 185 LGEEDGVFEFCNSNNVVESTSAFDVSVEENCVGYPWIVG 221

[Close]

BLAST of CmoCh04G012400 vs. ExPASy TrEMBL
Match: A0A6J1K6X9 (LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111491723 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 2.1e-67
Identity = 148/220 (67.27%), Postives = 170/220 (77.27%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 60
           MT L S  SSSSSSSSSCGACKFLRRKCS+ CVFAP F+YDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIA 120
           KLLLHLPMHVR+ AAITV+YEALERMRDP  GCV HIF LQQE++ SLQEEI +LG+QIA
Sbjct: 61  KLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIM-SLQEEIDMLGSQIA 120

Query: 121 NLLTTGAAISAVENPFIE------MNDFGMNSNHCQNELPSQLLPYRTSDDVQ-KDDQMI 180
           N  T    ++ VENP +E      +N+  MN+N  QNEL SQL    T D+VQ  D QMI
Sbjct: 121 NFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQL---PTFDEVQINDAQMI 180

Query: 181 SPLLCLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPW 214
           SPL C+GE++G FG C+ N+ +E S FDVSV+ENF  Y W
Sbjct: 181 SPLFCIGEEEGFFG-CNPNNAMENSAFDVSVDENF-AYLW 214

[Close]

BLAST of CmoCh04G012400 vs. NCBI nr
Match: XP_022957254.1 (LOB domain-containing protein 33-like [Cucurbita moschata])

HSP 1 Score: 429.5 bits (1103), Expect = 1.7e-116
Identity = 215/216 (99.54%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 1   MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 60
           MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS
Sbjct: 1   MTVLNSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVS 60

Query: 61  KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIA 120
           KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE VASLQEEIQILGTQIA
Sbjct: 61  KLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE-VASLQEEIQILGTQIA 120

Query: 121 NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG 180
           NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG
Sbjct: 121 NLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLLCLG 180

Query: 181 EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG
Sbjct: 181 EKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 215

[Close]

BLAST of CmoCh04G012400 vs. NCBI nr
Match: KAG6600983.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.1 bits (1058), Expect = 2.9e-111
Identity = 210/219 (95.89%), Postives = 212/219 (96.80%), Query Frame = 0


Query: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYD   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGT 120
           NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE VASLQEEIQILGT
Sbjct: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQE-VASLQEEIQILGT 120

Query: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLL 180
           QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLL
Sbjct: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLL 180

Query: 181 CLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           CLGEKDGGFGF HSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 CLGEKDGGFGFYHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of CmoCh04G012400 vs. NCBI nr
Match: KAG7031596.1 (LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 8.3e-111
Identity = 208/219 (94.98%), Postives = 211/219 (96.35%), Query Frame = 0


Query: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           MTVLNSYD   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGT 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCVLHIFALQQE VASLQEEIQILGT
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVLHIFALQQE-VASLQEEIQILGT 120

Query: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLL 180
           QIANLLTTGAAIS VENPFIEMNDFGMNSNHCQNELPSQLLPY+TSDDVQKDDQMISPLL
Sbjct: 121 QIANLLTTGAAISEVENPFIEMNDFGMNSNHCQNELPSQLLPYQTSDDVQKDDQMISPLL 180

Query: 181 CLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           CLGEKDGG GFCHSNHVVETSGF VSV+ENFG YPWILG
Sbjct: 181 CLGEKDGGLGFCHSNHVVETSGFHVSVDENFGAYPWILG 218

[Close]

BLAST of CmoCh04G012400 vs. NCBI nr
Match: XP_023006079.1 (LOB domain-containing protein 33-like [Cucurbita maxima])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 204/219 (93.15%), Postives = 208/219 (94.98%), Query Frame = 0


Query: 1   MTVLNSYD---SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60
           M VLNS+D   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS
Sbjct: 1   MAVLNSFDSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGAS 60

Query: 61  NVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGT 120
           NVSKLLLHLPMHVR+QAAITVTYEALERMRDPA GCVLHIFALQQE VASLQEEIQILGT
Sbjct: 61  NVSKLLLHLPMHVRSQAAITVTYEALERMRDPAYGCVLHIFALQQE-VASLQEEIQILGT 120

Query: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYRTSDDVQKDDQMISPLL 180
           QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPY+T DD QKDD MISPLL
Sbjct: 121 QIANLLTTGAAISAVENPFIEMNDFGMNSNHCQNELPSQLLPYQTCDDAQKDDPMISPLL 180

Query: 181 CLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           CLGEKDGGFGFCHSNHVV TSGF VSV+ENFGGYPWILG
Sbjct: 181 CLGEKDGGFGFCHSNHVVHTSGFHVSVDENFGGYPWILG 218

[Close]

BLAST of CmoCh04G012400 vs. NCBI nr
Match: XP_023548244.1 (LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 389.4 bits (999), Expect = 2.0e-104
Identity = 204/224 (91.07%), Postives = 206/224 (91.96%), Query Frame = 0


Query: 1   MTVLNSYD------SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60
           MTVLNSYD      SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF
Sbjct: 1   MTVLNSYDSSSSSSSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVF 60

Query: 61  GASNVSKLLLHLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQI 120
           GASNVSKLLLHLPMHVR+QAAITVTYEALERMRDPANGCV HIFALQQE VASLQEEIQI
Sbjct: 61  GASNVSKLLLHLPMHVRSQAAITVTYEALERMRDPANGCVFHIFALQQE-VASLQEEIQI 120

Query: 121 LGTQIANLLTTGAAISAVENPFIEMN--DFGMNSNHCQNELPSQLLPYRTSDDVQKDDQM 180
           LGTQIAN LTTGAAISAVENPFIEMN  DFGMNSNH QN    QLLPY+TSD VQKDDQM
Sbjct: 121 LGTQIANFLTTGAAISAVENPFIEMNDYDFGMNSNHSQN----QLLPYQTSDGVQKDDQM 180

Query: 181 ISPLLCLGEKDGGFGFCHSNHVVETSGFDVSVEENFGGYPWILG 217
           ISPLLCLGEKDGGFGFCHSNHVVE SGFDVSVEENFGGYPWILG
Sbjct: 181 ISPLLCLGEKDGGFGFCHSNHVVERSGFDVSVEENFGGYPWILG 219

[Close]

BLAST of CmoCh04G012400 vs. TAIR 10
Match: AT5G06080.1 (LOB domain-containing protein 33 )

HSP 1 Score: 157.9 bits (398), Expect = 9.1e-39
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           +S  SSCGACKFLRRKC+  CVF+P FSY++A+SHFAAVHKVFGASNVSK LLHLP H R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 72  TQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIAN 122
             AAIT++YEAL RMRDP  GCV HIFAL Q+VV +LQEEI+ LG+Q+ N
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVV-TLQEEIEFLGSQMKN 110

[Close]

BLAST of CmoCh04G012400 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-34
Identity = 77/127 (60.63%), Postives = 96/127 (75.59%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SSSSSS S CGACKFLRRKC+  CVFAP F +++  SHFAA+HKVFGASN SKLL HLP+
Sbjct: 3   SSSSSSGSPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPI 62

Query: 69  HVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAA 128
             R +AAIT++YEA  R++DP  GCV HIFALQQ+VV +LQ E++IL  Q A  +    +
Sbjct: 63  SDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVV-NLQAELEILKQQAAQSMIFADS 122

Query: 129 ISAVENP 136
            ++ ENP
Sbjct: 123 PTS-ENP 127

[Close]

BLAST of CmoCh04G012400 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-31
Identity = 67/114 (58.77%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 9   SSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPM 68
           SS       CGACKFLRRKC   C+FAP F  ++ +++FAAVHKVFGASNVSKLLLH+P+
Sbjct: 29  SSGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPV 88

Query: 69  HVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANL 123
           H R+ A +T+ YEA  R+RDP  GCV HIFALQQ+VV +LQ E+  L   +A+L
Sbjct: 89  HRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVV-NLQAEVSYLQAHLASL 141

[Close]

BLAST of CmoCh04G012400 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-31
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 5   NSYDSSSSSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLL 64
           +S + +++ + S CGACKFLRRKC+  C+FAP FS ++  + FAA+HKVFGASNVSKLLL
Sbjct: 3   SSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLL 62

Query: 65  HLPMHVRTQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLT 124
           ++P+H R +A +T+ YEA  R+ DP  GCV HIFALQQ+ VA LQ ++  +  QIA   T
Sbjct: 63  NVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQ-VAFLQSQVMQMKAQIAGHQT 122

Query: 125 TGA 128
           + A
Sbjct: 123 SAA 124

[Close]

BLAST of CmoCh04G012400 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 132.5 bits (332), Expect = 4.1e-31
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 0


Query: 12  SSSSSSCGACKFLRRKCSDQCVFAPLFSYDEATSHFAAVHKVFGASNVSKLLLHLPMHVR 71
           + S S CGACKFLRR+C   CVFAP F +++  SHFAA+H+VFGASN SKLL HLPM  R
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 72  TQAAITVTYEALERMRDPANGCVLHIFALQQEVVASLQEEIQILGTQIANLLTTGAAISA 131
            +AA T+ YEA  R +DP  GCV HIF+LQQ+VV +LQ +++IL  Q         ++ A
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVV-NLQTQLEILKQQATQ------SMMA 121

Query: 132 VENPFIEMNDFGMNSNHCQNELPSQL 158
           +++P IE      N N+ Q+  P  L
Sbjct: 122 IDSPSIE------NPNYYQDTKPQYL 134

The following BLAST results are available for this feature:

BLAST of CmoCh04G012400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHS8	1.3e-37	71.82	LOB domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=LBD33 PE=2 S...	[more]
Q9M2J7	3.3e-33	60.63	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]
O22131	1.5e-30	58.77	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB7	5.7e-30	53.66	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
Q9SLB6	5.7e-30	50.00	LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 S...	[more]

BLAST of CmoCh04G012400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1E9	8.4e-117	99.54	LOB domain-containing protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111458...	[more]
A0A6J1L156	8.4e-109	93.15	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149891...	[more]
A0A0A0KNX8	2.2e-77	72.94	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G182740 PE=3 SV...	[more]
A0A1S3CGM1	3.8e-77	73.06	LOB domain-containing protein 33-like OS=Cucumis melo OX=3656 GN=LOC103500235 PE...	[more]
A0A6J1K6X9	2.1e-67	67.27	LOB domain-containing protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC11149172...	[more]

BLAST of CmoCh04G012400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957254.1	1.7e-116	99.54	LOB domain-containing protein 33-like [Cucurbita moschata]	[more]
KAG6600983.1	2.9e-111	95.89	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7031596.1	8.3e-111	94.98	LOB domain-containing protein 33, partial [Cucurbita argyrosperma subsp. argyros...	[more]
XP_023006079.1	1.7e-108	93.15	LOB domain-containing protein 33-like [Cucurbita maxima]	[more]
XP_023548244.1	2.0e-104	91.07	LOB domain-containing protein 33-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmoCh04G012400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06080.1	9.1e-39	71.82	LOB domain-containing protein 33	[more]
AT3G58190.1	2.3e-34	60.63	lateral organ boundaries-domain 29	[more]
AT2G45420.1	1.1e-31	58.77	LOB domain-containing protein 18	[more]
AT2G42430.1	4.1e-31	53.66	lateral organ boundaries-domain 16	[more]
AT2G42440.1	4.1e-31	50.00	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 17..113 e-value: 1.6E-30 score: 105.6
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 16..119 score: 20.543329
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 14..156
None	No IPR available	PANTHER	PTHR31529:SF50	LOB DOMAIN-CONTAINING PROTEIN 33	coord: 14..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G012400.1	CmoCh04G012400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus