CmoCh04G012060 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh04G012060
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GATA type zinc finger transcription factor family protein
Location	Cmo_Chr04: 6155418 .. 6157515 (+)
RNA-Seq Expression	CmoCh04G012060
Synteny	CmoCh04G012060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTATAAAGAATCGACGCTGTGAATAATCTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAACACATTCTCTGCATTTTGTTCCTTCTATCATTGGAGGTACCCATCTTCAATTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTTGGTTTGATCCTATTCTCCACTAGATTTTCAAGTGTTTCAGTTTAAGCTCATCGATTTTATTTTCTGAGATTCTCAGATTATTGGCCTGCAGCTTCTTGTTTTGTCTTCTGAATTTGATCTGGGTTTTTGCGTATTGGTTGTGTTTGATGAAATGACATCAGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGTTTTGAATTCGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACGGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAGTGGAACACTTAAGGTACATCACTTAAGCTTCGATGTACATAATTACGGAGCACTTTTTTGAGTCAGAATGTGAGAACTTTTCTAAAATGATTTGTTAAATGCTTCAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTAGTATGTTCCAAACTTGGTCGAATTTAGAAGACACTCTACATCATGGATCTTGTAGCTATTGCTTTTTACTAACATTTTCTGTACTTCTCTTTTTCTACAGCTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGGTAAATTTAAACCCAATGCTGCAATTAGTTGTGATTGAATTTATAAACAGCCTGCTCATACCGTAGCCTCTTGTTGGTTCCAGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTTAGTTTAAAAGACATTAAAAAGATATTCAAATATTTAAAACCCTCTTAATCACATCAATAGTCAATTTTCACTCTCTATTTGAACTGTCTGTATATATATGTTGCACCGAATTATCTTTTTGCGGTCGTTTGAATTTGTTTTGCATACCATTGTTTCAACATTTACTTATCGACCTCTATAAGAAAGGGATATTCTTTAAAGCTACTGCATCTAAATGAGTTGGTTTTCTGAATGGCTTGAATGTGGCTCTTGTTTGAGACAATTAGTGAACTGATGATATATAAGCTTTGAGGAACTGTGGAAGTTACATGTTCTTAGTTTTCTTTATCTAAGTATTTCCTGCTGACGTAGAAATGGTTCCATCTCAATTTTGAAGTAGTTTTGCTGGTATTGGCACTTGGTATGCATCAGTGCTACTGTTATTTTATCTGCCGGGCATTGCTTGTATGCAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAGCCAAATTGTTTATTTGCTTCATTCATGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAGATAGATATGAAGTCATTCTGTATCCTGCTGAATTATTCTGAGTTTTATGTTGACC

mRNA sequence

TCTCTCTATAAAGAATCGACGCTGTGAATAATCTATCATAAATTATTTGTTTCTGGCTTTCGCTTTATCTTTCACTTCATTATCTTTTTCTTCTCCGCTCCACTTGCTGTAACCAAACACATTCTCTGCATTTTGTTCCTTCTATCATTGGAGGTACCCATCTTCAATTTCGATTGCATGTCAACTCTGATCAAGATCTTCTTCGTTCAGCATTTTTGGAGAAGGGAGCTTGTTTGATTGGGATAGCTTGGTGGTTTTGAATTCGAGGAGATTCTGGTTGGTTGAGACTAGTCAGATCTACTCTAAGGCTTTTAGCCATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACGGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAGTGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGTCGAGTTGTAAACTTCCAATTTGTGGTTTTGTTGAGTCCATTTTCCCTCTGCTTTCCCCCTTCCCCAGTGTGTTCTACTTTGTTCCTCACGGTTTCGTGATGGGAAACAAAAGAGAAACTTGCATGAGTCTCCAGCTCGTCATGCTGAGCCAAATTGTTTATTTGCTTCATTCATGAACTTCGCATTTGAAAGTGGTAATGATTTGCCTAAACTTTATGAAAGCATTTTGCAACTGTTAGTTTTGGGTTAGTACAAGATAGATATGAAGTCATTCTGTATCCTGCTGAATTATTCTGAGTTTTATGTTGACC

Coding sequence (CDS)

ATGTCGTTTATTGGCACCCAACAGAAATGCAAAGCTTGTGAGAAGACGGTGTACCCTGTAGATCAGTTATCTGCTGATGGGGTTGCTTTCCACAAGTCATGTTTCAAATGTAGCCACTGCAGTGGAACACTTAAGCTGAGTAATTATTCTTCAATGGAAGGTGTTCTGTACTGTAAGCCTCATTTTGAGCAGCTCTTCAAGGAAGCTGGGAACTTCAGCAAGAACTTTCTATCTACTGCAAAGTCCTCCGAGAAGCCAACTCCAGAGCTGACTAGGTCACCAAGCAAAGCGGCCAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACATGTGGAAAAACTGCATATCCACTGGAGAAGGTGACAGTTGAGAGTCAAGCCTATCATAAGTCGTGTTTTAAATGCTCACACGGTGGCTGTTCTTTATCTCCATCAAACTATGCTGCACTTGATGGAATTTTGTACTGCAAACACCACTTTTCACAGCTTTTCAAGGAAAAGGGAAGCTATAACCATCTGATCAAATCTGCATTGATGAAGCGGCAAGTAGCAACCTCTGATCCAGACACTTCAAAGGTCGAGTTGTAA

Protein sequence

MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKPHFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMKRQVATSDPDTSKVEL

Homology

[Close]

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot
Match: Q9M047 (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 320.1 bits (819), Expect = 1.8e-86
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-85
Identity = 145/187 (77.54%), Postives = 167/187 (89.30%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKC+ACEKTVYPV+ LSADG+++HK+CFKCSHC   L+LSNYSSMEGV+YC+P
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKS-SEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLE 120
           HFEQLFKE+G+FSKNF S AK  ++KPTPEL R+PS+ A MFSGTQ+KCATC KT YP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALM 180
           KVTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KRQVATS 187
           KR  A +
Sbjct: 181 KRATAAA 187

[Close]

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-70
Identity = 121/186 (65.05%), Postives = 153/186 (82.26%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KCKAC+KTVY +D L+ +G  +HKSCF+C+HC GTL +SNYSSM+GVLYCKP
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GN+SKNF   A  +EKP   LTR+PSK +S FSGTQ+KCATC KT YPLEK
Sbjct: 61  HFEQLFKESGNYSKNF--QAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VT+E ++YHK+CF+C+H GC L+ S+YA+L+G+LYCK HF+QLF EKGSYNH+ ++A   
Sbjct: 121 VTMEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANH 180

Query: 181 RQVATS 187
           R+ A+S
Sbjct: 181 RRSASS 184

[Close]

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-67
Identity = 117/177 (66.10%), Postives = 142/177 (80.23%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQ KC AC+KTV+ +D L+ADGV +HK+CFKCSHC G L + +YSSM+GVLYCK 
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE G+FSK F    +S++K   EL R+PSK  S FSGTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK---ELARAPSKICSAFSGTQDKCAACQKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA 178
           +T+E ++YHKSCFKCSHGGC L+ S+YAAL+G+LYCK HF QLF EKGSYNH+ K +
Sbjct: 121 LTLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKS 174

[Close]

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-67
Identity = 111/181 (61.33%), Postives = 147/181 (81.22%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GT  KC  C+KTVY VD LS +G+ +HKSCF+C+HC GTL++SNYSSM+GVLYCK 
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+GNFSKNF    +  +   PELTR+PSK +S+F GTQ+KCA C KT YPLEK
Sbjct: 61  HFEQLFKESGNFSKNF----QPGKTEKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           + +E + +HK+CF+C+HGGC+L+ S+YA+LD +LYC+HHF+QLF EKG+Y H++++A  +
Sbjct: 121 IQMEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHR 177

Query: 181 R 182
           R
Sbjct: 181 R 177

[Close]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL
Match: A0A6J1GYT7 (LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC111458736 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 2.6e-109
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQVATSDPDTSKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL
Match: A0A6J1JGT3 (LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.1e-107
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQVATSDPDTSKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL
Match: A0A0A0KQF5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.5e-104
Identity = 185/194 (95.36%), Postives = 188/194 (96.91%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKAC+KTVYPVDQLSADGV+FHKSCFKCSHC GTLKLSNYSSM+GVLYCKP
Sbjct: 1   MSFIGTQQKCKACDKTVYPVDQLSADGVSFHKSCFKCSHCKGTLKLSNYSSMDGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPDTSKVE 195
           RQ ATSDPD SKVE
Sbjct: 181 RQAATSDPDPSKVE 194

[Close]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL
Match: A0A6J1DT64 (LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC111023731 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 3.6e-103
Identity = 184/195 (94.36%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKS++KPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSTDKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQ ATS PD   VEL
Sbjct: 181 RQAATSVPDAENVEL 195

[Close]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL
Match: A0A6J1KBB9 (LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC111491761 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.1e-103
Identity = 183/195 (93.85%), Postives = 186/195 (95.38%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHK CFKCSHC GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKLCFKCSHCKGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE GNFSKNFLS AKS++KPTPEL RSPSKAA MFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKETGNFSKNFLSPAKSADKPTPELNRSPSKAARMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSA MK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSASMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQ ATSDP+ SKVEL
Sbjct: 181 RQAATSDPNASKVEL 195

[Close]

BLAST of CmoCh04G012060 vs. NCBI nr
Match: XP_022957291.1 (LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM domain-containing protein WLIM2b [Cucurbita moschata])

HSP 1 Score: 404.4 bits (1038), Expect = 5.4e-109
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQVATSDPDTSKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of CmoCh04G012060 vs. NCBI nr
Match: KAG6600951.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 398.3 bits (1022), Expect = 3.9e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 48  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 107

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 108 HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 167

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 168 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 227

Query: 181 RQVATSDPDTSK 193
           RQVATSDPDTSK
Sbjct: 228 RQVATSDPDTSK 239

[Close]

BLAST of CmoCh04G012060 vs. NCBI nr
Match: KAG7031583.1 (LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 398.3 bits (1022), Expect = 3.9e-107
Identity = 191/192 (99.48%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 37  MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 96

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 97  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 156

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 157 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 216

Query: 181 RQVATSDPDTSK 193
           RQVATSDPDTSK
Sbjct: 217 RQVATSDPDTSK 228

[Close]

BLAST of CmoCh04G012060 vs. NCBI nr
Match: XP_022987406.1 (LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM domain-containing protein WLIM2b [Cucurbita maxima])

HSP 1 Score: 396.4 bits (1017), Expect = 1.5e-106
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVY VDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYLVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPT ELTRSPSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTTELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDTSKVEL 196
           RQVATSDPDTSKVEL
Sbjct: 181 RQVATSDPDTSKVEL 195

[Close]

BLAST of CmoCh04G012060 vs. NCBI nr
Match: XP_023549296.1 (LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303.1 LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.7 bits (1010), Expect = 9.5e-106
Identity = 188/190 (98.95%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHC+GTLKLSNYSSMEGVLYCKP
Sbjct: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCNGTLKLSNYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTR+PSKAASMFSGTQEKCATCGKTAYPLEK
Sbjct: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRTPSKAASMFSGTQEKCATCGKTAYPLEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK
Sbjct: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180

Query: 181 RQVATSDPDT 191
           RQVATSDPDT
Sbjct: 181 RQVATSDPDT 190

[Close]

BLAST of CmoCh04G012060 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of CmoCh04G012060 vs. TAIR 10
Match: AT3G55770.2 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of CmoCh04G012060 vs. TAIR 10
Match: AT3G55770.3 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of CmoCh04G012060 vs. TAIR 10
Match: AT3G55770.4 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

[Close]

BLAST of CmoCh04G012060 vs. TAIR 10
Match: AT3G55770.5 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 320.1 bits (819), Expect = 1.2e-87
Identity = 147/186 (79.03%), Postives = 165/186 (88.71%), Query Frame = 0


Query: 1   MSFIGTQQKCKACEKTVYPVDQLSADGVAFHKSCFKCSHCSGTLKLSNYSSMEGVLYCKP 60
           MSF GTQQKCKACEKTVY V+ LSADGV +HKSCFKC+HC   L+LS+YSSMEGVLYCKP
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKEAGNFSKNFLSTAKSSEKPTPELTRSPSKAASMFSGTQEKCATCGKTAYPLEK 120
           HFEQLFKE+G+F+KNF S AKS++K TPELTR+PS+ A  FSGTQEKCATC KT YP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VTVESQAYHKSCFKCSHGGCSLSPSNYAALDGILYCKHHFSQLFKEKGSYNHLIKSALMK 180
           VTVESQ YHKSCFKCSHGGC +SPSNYAAL+GILYCKHHF+QLFKEKGSYNHLIKSA +K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

Query: 181 RQVATS 187
           R  A +
Sbjct: 181 RSAAAA 186

The following BLAST results are available for this feature:

BLAST of CmoCh04G012060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M047	1.8e-86	79.03	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana OX=3702 GN=WLIM2B P...	[more]
O04193	1.5e-85	77.54	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]
O80839	2.3e-70	65.05	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	1.4e-67	66.10	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q1ECF5	3.1e-67	61.33	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]

BLAST of CmoCh04G012060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GYT7	2.6e-109	100.00	LIM domain-containing protein WLIM2b OS=Cucurbita moschata OX=3662 GN=LOC1114587...	[more]
A0A6J1JGT3	7.1e-107	98.46	LIM domain-containing protein WLIM2b OS=Cucurbita maxima OX=3661 GN=LOC111484962...	[more]
A0A0A0KQF5	2.5e-104	95.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G198170 PE=4 SV=1	[more]
A0A6J1DT64	3.6e-103	94.36	LIM domain-containing protein WLIM2b-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1KBB9	8.1e-103	93.85	LIM domain-containing protein WLIM2a-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CmoCh04G012060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957291.1	5.4e-109	100.00	LIM domain-containing protein WLIM2b [Cucurbita moschata] >XP_022957292.1 LIM do...	[more]
KAG6600951.1	3.9e-107	99.48	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. sor...	[more]
KAG7031583.1	3.9e-107	99.48	LIM domain-containing protein WLIM2b, partial [Cucurbita argyrosperma subsp. arg...	[more]
XP_022987406.1	1.5e-106	98.46	LIM domain-containing protein WLIM2b [Cucurbita maxima] >XP_022987415.1 LIM doma...	[more]
XP_023549296.1	9.5e-106	98.95	LIM domain-containing protein WLIM2b [Cucurbita pepo subsp. pepo] >XP_023549303....	[more]

BLAST of CmoCh04G012060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55770.1	1.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.2	1.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.3	1.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.4	1.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.5	1.2e-87	79.03	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 107..159 e-value: 4.7E-12 score: 56.0 coord: 9..61 e-value: 7.9E-13 score: 58.6
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 10..65 e-value: 1.3E-11 score: 44.6 coord: 108..163 e-value: 1.4E-10 score: 41.3
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.513599
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 106..166 score: 12.5434
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 102..172 e-value: 1.1E-19 score: 72.3 coord: 4..74 e-value: 1.4E-20 score: 75.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..186
None	No IPR available	PANTHER	PTHR24206:SF94	LIM DOMAIN-CONTAINING PROTEIN WLIM2B	coord: 1..186
None	No IPR available	CDD	cd09441	LIM2_SF3	coord: 108..168 e-value: 1.12908E-35 score: 117.571
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 8.09424E-41 score: 131.048
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 134..173
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 100..133
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G012060.1	CmoCh04G012060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding